Wall clock time and date at job start Wed Apr 1 2020 05:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.64299 * 2 1 4 4 C 1.54335 * 110.85138 * 236.83671 * 2 1 3 5 5 N 1.47023 * 107.26654 * 219.67591 * 4 2 1 6 6 C 1.34770 * 125.64936 * 178.84699 * 5 4 2 7 7 O 1.21278 * 120.00088 * 359.71719 * 6 5 4 8 8 C 1.50705 * 120.00100 * 179.71191 * 6 5 4 9 9 S 1.81397 * 109.47197 * 180.02562 * 8 6 5 10 10 O 1.42101 * 110.54337 * 60.11947 * 9 8 6 11 11 O 1.42099 * 110.54468 * 283.37263 * 9 8 6 12 12 N 1.65597 * 104.45192 * 171.74362 * 9 8 6 13 13 C 1.46501 * 119.99781 * 60.15828 * 12 9 8 14 14 C 1.53001 * 109.47220 * 37.72336 * 13 12 9 15 15 C 1.52998 * 109.47257 * 277.72272 * 13 12 9 16 16 C 1.52998 * 109.47040 * 157.71967 * 13 12 9 17 17 C 1.47427 * 108.70174 * 358.57957 * 5 4 2 18 18 C 1.54914 * 104.83296 * 24.35852 * 17 5 4 19 19 H 1.08993 * 111.00554 * 204.87836 * 18 17 5 20 20 N 1.46497 * 111.00196 * 81.06311 * 18 17 5 21 21 C 1.36939 * 120.00009 * 86.45400 * 20 18 17 22 22 H 1.07993 * 120.00120 * 0.02562 * 21 20 18 23 23 C 1.38817 * 120.00006 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99980 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00090 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47219 * 89.99511 * 25 23 21 27 27 H 1.48500 * 109.47272 * 210.00061 * 25 23 21 28 28 H 1.48502 * 109.47018 * 330.00094 * 25 23 21 29 29 H 1.09002 * 109.46862 * 296.86134 * 1 2 3 30 30 H 1.09000 * 109.47331 * 56.85369 * 1 2 3 31 31 H 1.08998 * 109.47283 * 176.86251 * 1 2 3 32 32 H 1.08997 * 109.99262 * 100.19491 * 4 2 1 33 33 H 1.09002 * 109.77265 * 339.02745 * 4 2 1 34 34 H 1.08997 * 109.47073 * 60.00027 * 8 6 5 35 35 H 1.08998 * 109.47248 * 300.00255 * 8 6 5 36 36 H 0.96993 * 120.00169 * 240.16206 * 12 9 8 37 37 H 1.09004 * 109.46964 * 300.00131 * 14 13 12 38 38 H 1.08998 * 109.47428 * 180.02562 * 14 13 12 39 39 H 1.09005 * 109.46949 * 59.99518 * 14 13 12 40 40 H 1.09006 * 109.47073 * 175.99932 * 15 13 12 41 41 H 1.09001 * 109.47159 * 295.99164 * 15 13 12 42 42 H 1.09001 * 109.47305 * 55.99984 * 15 13 12 43 43 H 1.08996 * 109.47154 * 300.00495 * 16 13 12 44 44 H 1.09001 * 109.47078 * 60.00062 * 16 13 12 45 45 H 1.09002 * 109.47311 * 179.97438 * 16 13 12 46 46 H 1.08996 * 110.36727 * 143.19491 * 17 5 4 47 47 H 1.09004 * 110.36900 * 265.52119 * 17 5 4 48 48 H 0.96997 * 120.00526 * 266.45467 * 20 18 17 49 49 H 0.97003 * 120.00021 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2444 -1.5520 -0.7364 6 6 3.9922 -2.3861 -1.4857 7 8 3.7192 -2.5608 -2.6544 8 6 5.1677 -3.1017 -0.8714 9 16 5.9653 -4.1416 -2.1256 10 8 6.4269 -3.3487 -3.2107 11 8 5.2062 -5.3214 -2.3514 12 7 7.3505 -4.6806 -1.3955 13 6 7.2696 -5.4758 -0.1677 14 6 6.0689 -6.4205 -0.2502 15 6 7.1032 -4.5433 1.0338 16 6 8.5520 -6.2940 -0.0047 17 6 3.4632 -1.2486 0.6896 18 6 2.0789 -0.7933 1.2152 19 1 2.1849 -0.1488 2.0877 20 7 1.2271 -1.9462 1.5177 21 6 1.2983 -2.5463 2.7466 22 1 1.9820 -2.1695 3.4927 23 6 0.4907 -3.6383 3.0335 24 7 0.5595 -4.2154 4.2144 25 14 -0.6925 -4.2897 1.7431 26 1 -0.0109 -5.3235 0.9234 27 1 -1.8746 -4.8889 2.4129 28 1 -1.1325 -3.1743 0.8670 29 1 -0.3633 0.4643 0.9168 30 1 -0.3634 0.5619 -0.8604 31 1 -0.3634 -1.0261 -0.0562 32 1 2.3814 -0.1003 -1.9963 33 1 1.3155 -1.4713 -1.5804 34 1 4.8227 -3.7259 -0.0472 35 1 5.8838 -2.3698 -0.4978 36 1 8.2153 -4.4698 -1.7807 37 1 5.1552 -5.8376 -0.3664 38 1 6.0084 -7.0119 0.6635 39 1 6.1874 -7.0848 -1.1063 40 1 6.9718 -5.1367 1.9387 41 1 7.9909 -3.9188 1.1347 42 1 6.2286 -3.9103 0.8842 43 1 8.6705 -6.9583 -0.8607 44 1 9.4074 -5.6210 0.0540 45 1 8.4921 -6.8854 0.9090 46 1 3.7959 -2.1405 1.2205 47 1 4.1931 -0.4465 0.7992 48 1 0.6127 -2.2844 0.8477 49 1 -0.0051 -4.9783 4.4150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755121865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:31 Heat of formation + Delta-G solvation = -111.362150 kcal Electronic energy + Delta-G solvation = -30955.504805 eV Core-core repulsion = 26851.439857 eV Total energy + Delta-G solvation = -4104.064948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39921 -39.33434 -39.19023 -38.07715 -37.11616 -35.84090 -34.20672 -32.79857 -32.01458 -31.58692 -29.73998 -28.32260 -28.16412 -27.14412 -25.57163 -23.56940 -21.74266 -20.93667 -20.88440 -20.08380 -19.80930 -19.06502 -18.03509 -17.88138 -17.53638 -17.06928 -16.70314 -16.36699 -16.07220 -15.83848 -15.60389 -15.16754 -14.94661 -14.79770 -14.53087 -14.36337 -14.11197 -13.91102 -13.74356 -13.56429 -13.45674 -13.31533 -13.23398 -13.16030 -13.12282 -12.93718 -12.75878 -12.54720 -12.47598 -12.44458 -12.28053 -12.19887 -12.01377 -11.91081 -11.65902 -11.61986 -11.45406 -11.38077 -11.05389 -10.59261 -9.89780 -9.26519 -8.02688 -5.33361 -0.98154 1.19501 1.31505 1.35840 1.40098 1.58400 1.82827 2.44771 2.65812 3.03564 3.14845 3.28475 3.53260 3.59373 3.66301 3.79238 3.80927 3.91553 4.00567 4.03994 4.06156 4.32072 4.33164 4.57539 4.58915 4.64080 4.69803 4.77527 4.78352 4.88293 4.90887 4.91619 4.92485 5.02993 5.08513 5.15034 5.20999 5.29132 5.31011 5.39716 5.44528 5.44864 5.81320 6.10192 6.22390 6.24941 6.70066 7.08196 7.85295 8.01217 9.18045 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.004208 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.104800 B = 6652.305299 C = 7989.417935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.127 0.873 4 C 0.103 3.897 5 N -0.592 5.592 6 C 0.542 3.458 7 O -0.592 6.592 8 C -0.663 4.663 9 S 2.650 3.350 10 O -0.982 6.982 11 O -0.980 6.980 12 N -1.094 6.094 13 C 0.164 3.836 14 C -0.188 4.188 15 C -0.189 4.189 16 C -0.145 4.145 17 C 0.068 3.932 18 C 0.162 3.838 19 H 0.095 0.905 20 N -0.742 5.742 21 C -0.215 4.215 22 H 0.078 0.922 23 C -0.048 4.048 24 N -0.975 5.975 25 Si 0.922 3.078 26 H -0.294 1.294 27 H -0.297 1.297 28 H -0.255 1.255 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.177 0.823 35 H 0.203 0.797 36 H 0.429 0.571 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.110 0.890 48 H 0.361 0.639 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.380 5.798 -6.276 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.145 0.855 4 C -0.019 4.019 5 N -0.322 5.322 6 C 0.330 3.670 7 O -0.475 6.475 8 C -0.792 4.792 9 S 2.741 3.259 10 O -0.972 6.972 11 O -0.970 6.970 12 N -0.859 5.859 13 C 0.077 3.923 14 C -0.246 4.246 15 C -0.247 4.247 16 C -0.204 4.204 17 C -0.057 4.057 18 C 0.053 3.947 19 H 0.113 0.887 20 N -0.385 5.385 21 C -0.346 4.346 22 H 0.096 0.904 23 C -0.241 4.241 24 N -0.625 5.625 25 Si 0.752 3.248 26 H -0.222 1.222 27 H -0.224 1.224 28 H -0.180 1.180 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.195 0.805 35 H 0.220 0.780 36 H 0.267 0.733 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.127 0.873 48 H 0.195 0.805 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.849 5.399 -7.476 18.337 hybrid contribution -0.958 -0.786 -0.107 1.243 sum 14.891 4.613 -7.583 17.336 Atomic orbital electron populations 1.21645 0.93824 1.01033 1.02803 1.22550 0.96737 1.00247 0.92252 0.85478 1.22252 0.86998 0.94509 0.98187 1.48332 1.29023 1.42255 1.12616 1.19279 0.83338 0.79248 0.85175 1.90804 1.72760 1.66156 1.17788 1.31334 1.08840 1.17337 1.21661 1.03588 0.73964 0.74267 0.74113 1.93514 1.80028 1.72663 1.51015 1.93591 1.73116 1.46049 1.84215 1.55498 1.23469 1.67184 1.39709 1.20447 0.97897 0.90929 0.83075 1.22693 0.96815 1.01015 1.04061 1.22738 1.03837 1.00467 0.97694 1.22047 0.94823 1.00099 1.03444 1.23546 1.01113 1.02480 0.78542 1.21683 0.88376 0.88135 0.96534 0.88693 1.42842 1.46817 1.35428 1.13368 1.19058 1.17132 1.07749 0.90675 0.90426 1.25159 1.01761 0.99529 0.97623 1.69803 1.44414 1.25742 1.22582 0.85927 0.79941 0.78901 0.80030 1.22154 1.22422 1.18012 0.91555 0.90643 0.95007 0.89724 0.93347 0.80530 0.77991 0.73271 0.93535 0.89178 0.91580 0.89808 0.89137 0.92172 0.92007 0.89969 0.89694 0.90434 0.87253 0.80476 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.72 71.98 0.63 -2.73 16 2 C -0.10 -2.29 3.41 -9.60 -0.03 -2.32 16 3 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.10 2.82 6.47 86.73 0.56 3.38 16 5 N -0.59 -17.39 3.33 -811.76 -2.70 -20.09 16 6 C 0.54 17.86 7.87 87.66 0.69 18.55 16 7 O -0.59 -24.25 15.94 1.58 0.03 -24.23 16 8 C -0.66 -15.99 3.74 71.24 0.27 -15.72 16 9 S 2.65 74.75 4.25 -56.49 -0.24 74.51 16 10 O -0.98 -33.74 17.75 -124.01 -2.20 -35.94 16 11 O -0.98 -35.30 14.49 -127.65 -1.85 -37.15 16 12 N -1.09 -19.59 5.42 -152.22 -0.82 -20.42 16 13 C 0.16 2.66 1.16 3.60 0.00 2.66 16 14 C -0.19 -4.20 7.09 71.98 0.51 -3.69 16 15 C -0.19 -2.51 8.61 71.98 0.62 -1.90 16 16 C -0.15 -1.61 8.65 71.98 0.62 -0.99 16 17 C 0.07 1.71 6.38 86.86 0.55 2.26 16 18 C 0.16 4.72 3.44 46.39 0.16 4.88 16 19 H 0.10 2.59 8.13 -2.39 -0.02 2.57 16 20 N -0.74 -29.96 4.54 -316.38 -1.44 -31.39 16 21 C -0.22 -10.75 10.47 84.03 0.88 -9.87 16 22 H 0.08 4.10 8.06 -2.91 -0.02 4.07 16 23 C -0.05 -2.67 5.50 84.86 0.47 -2.20 16 24 N -0.97 -58.72 13.97 21.65 0.30 -58.42 16 25 Si 0.92 44.67 27.74 68.60 1.90 46.57 16 26 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 28 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 0.97 6.36 -2.39 -0.02 0.95 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.53 7.77 -2.39 -0.02 1.52 16 34 H 0.18 3.94 5.50 -2.39 -0.01 3.92 16 35 H 0.20 2.90 7.93 -2.39 -0.02 2.88 16 36 H 0.43 5.56 8.67 -96.75 -0.84 4.72 16 37 H 0.05 1.24 5.23 -2.39 -0.01 1.23 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.63 7.70 -2.38 -0.02 1.61 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.85 4.22 -2.39 -0.01 0.84 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 2.15 7.48 -2.39 -0.02 2.14 16 47 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.36 15.21 3.94 -92.71 -0.37 14.85 16 49 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -81.33 388.50 -1.39 -82.72 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.29 Total: 31.52 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 5.93 Total: -7.69 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -4.66 Total: -130.32 kcal Atomic # 8 Polarization: -93.29 SS G_CDS: -4.03 Total: -97.32 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: 74.75 SS G_CDS: -0.24 Total: 74.51 kcal Total: -81.33 -1.39 -82.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755121865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.644 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds