Wall clock time and date at job start Wed Apr 1 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99929 * 2 1 4 4 C 1.50708 * 109.46825 * 275.57061 * 3 2 1 5 5 H 1.07996 * 119.99835 * 4.71742 * 4 3 2 6 6 C 1.37874 * 119.99731 * 184.71638 * 4 3 2 7 7 N 1.31516 * 120.00070 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46796 * 60.00284 * 8 6 4 10 10 H 1.48498 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47109 * 300.00208 * 8 6 4 12 12 S 1.65599 * 119.99846 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.39984 * 159.57415 * 12 2 1 14 14 O 1.42098 * 106.40389 * 26.65050 * 12 2 1 15 15 N 1.65602 * 107.22062 * 273.10988 * 12 2 1 16 16 C 1.46501 * 119.99572 * 62.77502 * 15 12 2 17 17 C 1.53003 * 109.46817 * 164.44511 * 16 15 12 18 18 C 1.53008 * 109.46997 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47085 * 180.02562 * 18 17 16 20 20 C 1.47197 * 119.78569 * 270.00145 * 19 18 17 21 21 C 1.52978 * 108.66681 * 108.03907 * 20 19 18 22 22 C 1.51777 * 110.88165 * 86.46925 * 21 20 19 23 23 C 1.51798 * 113.81257 * 292.99647 * 22 21 20 24 24 C 1.53061 * 110.74237 * 66.80567 * 23 22 21 25 25 C 1.33366 * 119.79190 * 89.99796 * 19 18 17 26 26 O 1.21282 * 119.88687 * 0.55966 * 25 19 18 27 27 H 1.09000 * 109.46847 * 269.99957 * 1 2 3 28 28 H 1.08997 * 109.47052 * 30.00212 * 1 2 3 29 29 H 1.09002 * 109.47040 * 150.00142 * 1 2 3 30 30 H 1.09001 * 109.47256 * 35.56878 * 3 2 1 31 31 H 1.08993 * 109.47392 * 155.57205 * 3 2 1 32 32 H 0.97008 * 120.00030 * 180.02562 * 7 6 4 33 33 H 0.96994 * 120.00542 * 242.78404 * 15 12 2 34 34 H 1.08999 * 109.47508 * 44.44492 * 16 15 12 35 35 H 1.09001 * 109.47656 * 284.44585 * 16 15 12 36 36 H 1.09002 * 109.47150 * 60.00500 * 17 16 15 37 37 H 1.08990 * 109.47390 * 300.00157 * 17 16 15 38 38 H 1.08994 * 109.47036 * 59.99980 * 18 17 16 39 39 H 1.08998 * 109.47036 * 299.99946 * 18 17 16 40 40 H 1.09001 * 109.60357 * 348.28524 * 20 19 18 41 41 H 1.08996 * 109.60607 * 227.79965 * 20 19 18 42 42 H 1.09003 * 109.19800 * 326.11062 * 21 20 19 43 43 H 1.09003 * 109.16380 * 206.80584 * 21 20 19 44 44 H 1.09001 * 108.61729 * 171.87596 * 22 21 20 45 45 H 1.09003 * 108.61654 * 54.11577 * 22 21 20 46 46 H 1.08997 * 109.22302 * 306.47992 * 23 22 21 47 47 H 1.08999 * 109.22280 * 187.13493 * 23 22 21 48 48 H 1.08992 * 109.63292 * 155.38488 * 24 23 22 49 49 H 1.09004 * 109.79714 * 34.88254 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7727 -1.4142 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9067 -1.6758 7 7 3.6581 3.5490 -0.6912 8 14 3.2323 3.5310 -3.4288 9 1 1.8858 3.8478 -3.9693 10 1 4.0710 4.7564 -3.4415 11 1 3.8696 2.4856 -4.2690 12 16 2.2930 -1.4342 0.0006 13 8 3.6000 -1.1431 -0.4752 14 8 1.4386 -2.3911 -0.6104 15 7 2.4638 -1.9009 1.5803 16 6 1.2784 -2.1951 2.3894 17 6 1.6965 -2.9589 3.6475 18 6 0.4584 -3.2667 4.4922 19 7 0.8587 -3.9975 5.6971 20 6 0.9095 -5.4685 5.6771 21 6 2.3747 -5.9080 5.6931 22 6 2.8965 -5.9998 7.1154 23 6 2.9898 -4.6594 7.8217 24 6 1.5960 -4.0710 8.0542 25 6 1.1747 -3.3259 6.8051 26 8 1.1198 -2.1143 6.8138 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6553 2.0013 0.5978 31 1 3.1895 1.1156 0.4250 32 1 4.1779 4.3471 -0.8753 33 1 3.3486 -1.9795 1.9699 34 1 0.5842 -2.8029 1.8092 35 1 0.7929 -1.2620 2.6753 36 1 2.3907 -2.3510 4.2278 37 1 2.1819 -3.8919 3.3616 38 1 -0.2355 -3.8747 3.9118 39 1 -0.0275 -2.3338 4.7781 40 1 0.4264 -5.8388 4.7729 41 1 0.3994 -5.8640 6.5553 42 1 2.9721 -5.1844 5.1382 43 1 2.4606 -6.8844 5.2161 44 1 3.8884 -6.4513 7.0937 45 1 2.2343 -6.6494 7.6877 46 1 3.5724 -3.9709 7.2096 47 1 3.4875 -4.7936 8.7821 48 1 1.6252 -3.3829 8.8989 49 1 0.8864 -4.8727 8.2591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045799592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:36 Heat of formation + Delta-G solvation = -124.701201 kcal Electronic energy + Delta-G solvation = -29408.632268 eV Core-core repulsion = 25303.988895 eV Total energy + Delta-G solvation = -4104.643373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.74441 -37.06604 -36.73636 -36.35725 -35.45154 -35.12536 -34.75204 -32.40180 -31.52848 -31.08963 -27.74015 -27.41447 -25.20348 -25.00266 -24.08369 -22.28183 -21.92726 -21.05704 -19.25898 -18.78924 -17.61105 -17.25027 -16.94538 -16.66193 -16.36512 -15.78374 -15.62858 -15.21468 -14.92136 -14.61156 -14.39250 -14.20044 -13.99322 -13.83555 -13.45880 -13.30936 -13.22701 -13.03003 -12.64956 -12.38054 -12.26246 -12.14493 -12.08912 -11.76348 -11.57269 -11.46060 -11.41580 -11.22219 -11.16368 -11.12904 -11.07370 -11.02624 -10.94127 -10.68181 -10.45803 -10.01458 -9.92039 -9.74993 -9.29753 -9.03674 -8.40957 -8.03175 -6.02936 -4.07331 1.26881 2.40433 2.66638 3.35796 3.39371 3.43567 3.56095 4.06501 4.16746 4.25906 4.30928 4.37289 4.47348 4.70047 4.72827 4.78224 4.89280 4.95067 4.96518 4.99681 5.13099 5.17285 5.21365 5.31866 5.33109 5.44566 5.46059 5.50707 5.53850 5.62271 5.66419 5.69409 5.79241 5.82682 5.92961 6.03313 6.15115 6.21255 6.33225 6.59411 7.09545 7.12399 7.31060 7.45084 7.66334 7.93949 7.94208 8.23939 8.94818 9.57748 11.05669 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002272 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.969387 B =12323.135854 C =12689.798149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.783 3.217 13 O -0.964 6.964 14 O -1.000 7.000 15 N -1.135 6.135 16 C 0.124 3.876 17 C -0.140 4.140 18 C 0.112 3.888 19 N -0.608 5.608 20 C 0.110 3.890 21 C -0.144 4.144 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.138 4.138 25 C 0.513 3.487 26 O -0.543 6.543 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -21.366 18.500 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.983 6.983 15 N -0.893 5.893 16 C -0.004 4.004 17 C -0.180 4.180 18 C -0.011 4.011 19 N -0.340 5.340 20 C -0.013 4.013 21 C -0.182 4.182 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.178 4.178 25 C 0.301 3.699 26 O -0.420 6.420 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.114 0.886 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.226 -21.012 17.704 28.173 hybrid contribution 0.465 0.567 -0.424 0.847 sum -5.761 -20.446 17.280 27.383 Atomic orbital electron populations 1.21382 0.80314 1.03494 1.00137 1.57581 1.14225 1.23306 1.88703 1.19065 0.91240 0.78640 0.97594 1.21458 1.31855 1.10339 0.93411 0.92212 1.24943 0.95042 0.96546 0.97489 1.69916 1.33162 1.18916 1.31376 0.86569 0.78112 0.78144 0.84683 1.20179 1.21167 1.20013 1.01896 0.73345 0.72912 0.72803 1.93643 1.38693 1.84569 1.77916 1.93514 1.69055 1.61201 1.74531 1.56235 1.13874 1.85921 1.33310 1.21079 0.87519 0.99641 0.92111 1.22138 0.98956 1.01079 0.95834 1.21507 0.96364 0.98275 0.84996 1.47870 1.67311 1.07027 1.11826 1.21874 0.96964 0.79146 1.03329 1.21853 0.96273 1.02598 0.97507 1.21173 1.01919 0.97123 0.95692 1.21228 0.95444 0.96988 1.01525 1.22005 0.98512 1.01202 0.96074 1.20579 0.76494 0.87891 0.84934 1.90756 1.52612 1.14151 1.84517 0.94313 0.90391 0.91636 0.94988 0.93969 0.92623 0.75570 0.90676 0.91641 0.90736 0.91057 0.90009 0.89232 0.89378 0.90523 0.90833 0.90452 0.91596 0.91843 0.91420 0.90636 0.88569 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.69 59.85 0.64 2.24 16 2 N -1.00 -20.90 3.23 -123.05 -0.40 -21.29 16 3 C 0.26 6.58 5.10 -5.19 -0.03 6.55 16 4 C -0.53 -15.18 9.38 -34.44 -0.32 -15.50 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.15 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 S 2.78 55.51 6.09 -107.50 -0.65 54.86 16 13 O -0.96 -23.44 16.99 -57.17 -0.97 -24.41 16 14 O -1.00 -20.73 16.34 -57.17 -0.93 -21.66 16 15 N -1.13 -16.85 6.05 -10.61 -0.06 -16.91 16 16 C 0.12 1.48 6.26 -4.04 -0.03 1.46 16 17 C -0.14 -1.38 5.68 -26.73 -0.15 -1.54 16 18 C 0.11 0.97 5.39 -4.04 -0.02 0.95 16 19 N -0.61 -4.86 2.45 -173.24 -0.43 -5.29 16 20 C 0.11 0.52 5.91 -3.67 -0.02 0.50 16 21 C -0.14 -0.67 5.73 -27.36 -0.16 -0.83 16 22 C -0.12 -0.52 5.27 -27.96 -0.15 -0.66 16 23 C -0.11 -0.64 5.67 -27.31 -0.15 -0.79 16 24 C -0.14 -0.91 5.56 -27.50 -0.15 -1.06 16 25 C 0.51 5.22 6.79 -11.26 -0.08 5.14 16 26 O -0.54 -8.09 16.59 5.56 0.09 -7.99 16 27 H 0.04 0.54 8.05 -51.93 -0.42 0.12 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 1.05 7.05 -51.93 -0.37 0.68 16 30 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.41 5.51 8.66 -34.48 -0.30 5.21 16 34 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 35 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 38 H 0.08 0.52 7.85 -51.93 -0.41 0.12 16 39 H 0.09 0.92 7.37 -51.93 -0.38 0.54 16 40 H 0.09 0.32 7.77 -51.93 -0.40 -0.08 16 41 H 0.08 0.26 6.71 -51.93 -0.35 -0.09 16 42 H 0.07 0.48 7.80 -51.93 -0.41 0.07 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.20 7.89 -51.93 -0.41 -0.21 16 46 H 0.07 0.51 7.86 -51.93 -0.41 0.10 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.10 0.66 8.13 -51.93 -0.42 0.24 16 49 H 0.09 0.40 6.79 -51.93 -0.35 0.04 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -37.47 402.84 -10.61 -48.07 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.32 Total: -0.80 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.72 Total: -1.85 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -0.15 Total: -69.43 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -1.81 Total: -54.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -0.65 Total: 54.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.47 -10.61 -48.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045799592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.627 kcal (2) G-P(sol) polarization free energy of solvation -37.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds