Wall clock time and date at job start Wed Apr 1 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99929 * 2 1 4 4 C 1.50708 * 109.46825 * 275.57061 * 3 2 1 5 5 H 1.07996 * 119.99835 * 4.71742 * 4 3 2 6 6 C 1.37874 * 119.99731 * 184.71638 * 4 3 2 7 7 N 1.31516 * 120.00070 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46796 * 60.00284 * 8 6 4 10 10 H 1.48498 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47109 * 300.00208 * 8 6 4 12 12 S 1.65599 * 119.99846 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.39984 * 159.57415 * 12 2 1 14 14 O 1.42098 * 106.40389 * 26.65050 * 12 2 1 15 15 N 1.65602 * 107.22062 * 273.10988 * 12 2 1 16 16 C 1.46501 * 119.99572 * 62.77502 * 15 12 2 17 17 C 1.53003 * 109.46817 * 164.44511 * 16 15 12 18 18 C 1.53008 * 109.46997 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.47085 * 180.02562 * 18 17 16 20 20 C 1.47197 * 119.78569 * 270.00145 * 19 18 17 21 21 C 1.52978 * 108.66681 * 108.03907 * 20 19 18 22 22 C 1.51777 * 110.88165 * 86.46925 * 21 20 19 23 23 C 1.51798 * 113.81257 * 292.99647 * 22 21 20 24 24 C 1.53061 * 110.74237 * 66.80567 * 23 22 21 25 25 C 1.33366 * 119.79190 * 89.99796 * 19 18 17 26 26 O 1.21282 * 119.88687 * 0.55966 * 25 19 18 27 27 H 1.09000 * 109.46847 * 269.99957 * 1 2 3 28 28 H 1.08997 * 109.47052 * 30.00212 * 1 2 3 29 29 H 1.09002 * 109.47040 * 150.00142 * 1 2 3 30 30 H 1.09001 * 109.47256 * 35.56878 * 3 2 1 31 31 H 1.08993 * 109.47392 * 155.57205 * 3 2 1 32 32 H 0.97008 * 120.00030 * 180.02562 * 7 6 4 33 33 H 0.96994 * 120.00542 * 242.78404 * 15 12 2 34 34 H 1.08999 * 109.47508 * 44.44492 * 16 15 12 35 35 H 1.09001 * 109.47656 * 284.44585 * 16 15 12 36 36 H 1.09002 * 109.47150 * 60.00500 * 17 16 15 37 37 H 1.08990 * 109.47390 * 300.00157 * 17 16 15 38 38 H 1.08994 * 109.47036 * 59.99980 * 18 17 16 39 39 H 1.08998 * 109.47036 * 299.99946 * 18 17 16 40 40 H 1.09001 * 109.60357 * 348.28524 * 20 19 18 41 41 H 1.08996 * 109.60607 * 227.79965 * 20 19 18 42 42 H 1.09003 * 109.19800 * 326.11062 * 21 20 19 43 43 H 1.09003 * 109.16380 * 206.80584 * 21 20 19 44 44 H 1.09001 * 108.61729 * 171.87596 * 22 21 20 45 45 H 1.09003 * 108.61654 * 54.11577 * 22 21 20 46 46 H 1.08997 * 109.22302 * 306.47992 * 23 22 21 47 47 H 1.08999 * 109.22280 * 187.13493 * 23 22 21 48 48 H 1.08992 * 109.63292 * 155.38488 * 24 23 22 49 49 H 1.09004 * 109.79714 * 34.88254 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7727 -1.4142 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9067 -1.6758 7 7 3.6581 3.5490 -0.6912 8 14 3.2323 3.5310 -3.4288 9 1 1.8858 3.8478 -3.9693 10 1 4.0710 4.7564 -3.4415 11 1 3.8696 2.4856 -4.2690 12 16 2.2930 -1.4342 0.0006 13 8 3.6000 -1.1431 -0.4752 14 8 1.4386 -2.3911 -0.6104 15 7 2.4638 -1.9009 1.5803 16 6 1.2784 -2.1951 2.3894 17 6 1.6965 -2.9589 3.6475 18 6 0.4584 -3.2667 4.4922 19 7 0.8587 -3.9975 5.6971 20 6 0.9095 -5.4685 5.6771 21 6 2.3747 -5.9080 5.6931 22 6 2.8965 -5.9998 7.1154 23 6 2.9898 -4.6594 7.8217 24 6 1.5960 -4.0710 8.0542 25 6 1.1747 -3.3259 6.8051 26 8 1.1198 -2.1143 6.8138 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6553 2.0013 0.5978 31 1 3.1895 1.1156 0.4250 32 1 4.1779 4.3471 -0.8753 33 1 3.3486 -1.9795 1.9699 34 1 0.5842 -2.8029 1.8092 35 1 0.7929 -1.2620 2.6753 36 1 2.3907 -2.3510 4.2278 37 1 2.1819 -3.8919 3.3616 38 1 -0.2355 -3.8747 3.9118 39 1 -0.0275 -2.3338 4.7781 40 1 0.4264 -5.8388 4.7729 41 1 0.3994 -5.8640 6.5553 42 1 2.9721 -5.1844 5.1382 43 1 2.4606 -6.8844 5.2161 44 1 3.8884 -6.4513 7.0937 45 1 2.2343 -6.6494 7.6877 46 1 3.5724 -3.9709 7.2096 47 1 3.4875 -4.7936 8.7821 48 1 1.6252 -3.3829 8.8989 49 1 0.8864 -4.8727 8.2591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045799592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:35 Heat of formation + Delta-G solvation = -152.696679 kcal Electronic energy + Delta-G solvation = -29409.846243 eV Core-core repulsion = 25303.988895 eV Total energy + Delta-G solvation = -4105.857348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.41626 -38.32754 -37.77997 -37.38346 -37.18104 -36.85658 -35.54469 -34.51485 -32.13765 -31.88333 -29.67598 -28.01661 -26.79657 -25.88310 -24.69290 -24.22719 -22.80631 -21.45220 -20.41748 -19.78392 -18.95796 -18.46365 -18.26990 -18.15706 -17.70084 -17.18788 -16.62036 -16.36332 -16.09737 -15.89169 -15.21503 -15.09035 -14.94812 -14.85817 -14.49367 -14.36572 -14.14265 -14.07185 -13.99966 -13.73102 -13.35639 -13.32554 -13.15718 -13.13788 -13.04655 -12.92975 -12.85146 -12.55414 -12.47989 -12.38181 -12.33903 -12.01077 -11.88541 -11.78444 -11.62617 -11.57426 -11.42826 -10.71171 -10.62181 -10.49830 -9.81660 -9.70011 -8.21447 -6.34260 -0.32128 1.38173 1.42190 1.49313 1.65271 1.98225 2.12089 2.39496 2.64000 3.09442 3.45755 3.52564 3.83935 3.90929 3.94712 3.95276 4.02152 4.04881 4.14286 4.33787 4.42467 4.46797 4.49634 4.57214 4.61730 4.66163 4.74998 4.77839 4.84393 4.87184 4.88490 5.06221 5.07883 5.10584 5.14594 5.18079 5.22717 5.26716 5.30716 5.43412 5.47907 5.59809 5.68863 5.84791 6.06655 6.12256 6.45018 6.74486 7.21368 7.34866 8.86205 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002272 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.969387 B =12323.135854 C =12689.798149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.004 6.004 3 C 0.271 3.729 4 C -0.551 4.551 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.959 3.041 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.276 1.276 12 S 2.801 3.199 13 O -1.013 7.013 14 O -1.006 7.006 15 N -1.122 6.122 16 C 0.116 3.884 17 C -0.128 4.128 18 C 0.110 3.890 19 N -0.602 5.602 20 C 0.104 3.896 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.131 4.131 25 C 0.503 3.497 26 O -0.603 6.603 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.040 0.960 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 -23.854 18.805 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.845 5.845 3 C 0.147 3.853 4 C -0.591 4.591 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.784 3.216 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.202 1.202 12 S 2.809 3.191 13 O -0.997 6.997 14 O -0.989 6.989 15 N -0.884 5.884 16 C -0.010 4.010 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.333 5.333 20 C -0.018 4.018 21 C -0.181 4.181 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.171 4.171 25 C 0.293 3.707 26 O -0.485 6.485 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.609 -23.556 17.999 30.606 hybrid contribution 0.851 1.242 -0.444 1.569 sum -6.759 -22.314 17.554 29.185 Atomic orbital electron populations 1.21636 0.78014 1.03800 1.02518 1.57468 1.15822 1.21892 1.89356 1.18603 0.90428 0.80287 0.95971 1.21825 1.31952 1.10668 0.94612 0.92635 1.25818 0.94713 0.96822 1.01700 1.70021 1.33763 1.19383 1.33398 0.85593 0.78807 0.77646 0.79587 1.18598 1.20192 1.20161 1.01135 0.71997 0.72467 0.73548 1.93573 1.41220 1.85204 1.79748 1.93498 1.68944 1.60966 1.75466 1.55813 1.15434 1.85191 1.31991 1.21368 0.86534 1.00431 0.92693 1.22018 0.99255 1.00900 0.94633 1.21509 0.95998 0.98396 0.85431 1.47993 1.65883 1.08536 1.10877 1.22197 0.97459 0.76729 1.05368 1.21848 0.95793 1.02823 0.97661 1.21174 1.02697 0.96313 0.95544 1.21228 0.94462 0.97232 1.01999 1.22020 0.99647 1.01498 0.93965 1.21278 0.75651 0.87420 0.86400 1.90722 1.55388 1.16786 1.85631 0.90908 0.91171 0.90238 0.95703 0.96570 0.92366 0.74607 0.89020 0.91560 0.93017 0.89626 0.86870 0.91298 0.87547 0.88354 0.93106 0.88668 0.91331 0.89677 0.94107 0.89264 0.89277 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.83 10.69 127.77 1.37 4.20 16 2 N -1.00 -42.22 3.23 -543.21 -1.75 -43.97 16 3 C 0.27 14.24 5.10 85.64 0.44 14.67 16 4 C -0.55 -31.99 9.38 25.60 0.24 -31.75 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.01 0.52 5.46 84.65 0.46 0.98 16 7 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 8 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 9 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 S 2.80 111.55 6.09 -56.49 -0.34 111.20 16 13 O -1.01 -50.44 16.99 -128.00 -2.17 -52.61 16 14 O -1.01 -40.49 16.34 -128.00 -2.09 -42.58 16 15 N -1.12 -32.82 6.05 -187.48 -1.13 -33.95 16 16 C 0.12 2.63 6.26 86.38 0.54 3.17 16 17 C -0.13 -2.42 5.68 30.60 0.17 -2.24 16 18 C 0.11 1.76 5.39 86.38 0.47 2.23 16 19 N -0.60 -8.76 2.45 -821.17 -2.02 -10.77 16 20 C 0.10 0.65 5.91 86.24 0.51 1.16 16 21 C -0.14 -0.96 5.73 30.19 0.17 -0.79 16 22 C -0.12 -0.70 5.27 29.80 0.16 -0.54 16 23 C -0.11 -1.11 5.67 30.22 0.17 -0.94 16 24 C -0.13 -1.57 5.56 30.10 0.17 -1.40 16 25 C 0.50 10.14 6.79 88.11 0.60 10.74 16 26 O -0.60 -18.86 16.59 -3.03 -0.05 -18.91 16 27 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 28 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 29 H 0.08 2.40 7.05 -2.39 -0.02 2.38 16 30 H 0.02 1.32 8.11 -2.39 -0.02 1.30 16 31 H 0.02 0.93 7.50 -2.39 -0.02 0.91 16 32 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 33 H 0.42 11.25 8.66 -96.75 -0.84 10.41 16 34 H 0.09 1.82 7.79 -2.39 -0.02 1.80 16 35 H 0.07 1.51 8.05 -2.39 -0.02 1.50 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.37 7.90 -2.39 -0.02 1.36 16 38 H 0.11 1.09 7.85 -2.39 -0.02 1.08 16 39 H 0.07 1.42 7.37 -2.39 -0.02 1.40 16 40 H 0.11 0.33 7.77 -2.39 -0.02 0.31 16 41 H 0.10 0.24 6.71 -2.39 -0.02 0.23 16 42 H 0.05 0.59 7.80 -2.39 -0.02 0.57 16 43 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 0.18 7.89 -2.39 -0.02 0.16 16 46 H 0.04 0.63 7.86 -2.39 -0.02 0.61 16 47 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 49 H 0.12 0.69 6.79 -2.39 -0.02 0.67 16 Total: -1.00 -83.69 402.84 -1.69 -85.38 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.10 Total: 14.99 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.46 Total: -0.53 kcal Atomic # 7 Polarization: -139.90 SS G_CDS: -4.62 Total: -144.52 kcal Atomic # 8 Polarization: -109.79 SS G_CDS: -4.32 Total: -114.10 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 111.55 SS G_CDS: -0.34 Total: 111.20 kcal Total: -83.69 -1.69 -85.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045799592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.317 kcal (2) G-P(sol) polarization free energy of solvation -83.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds