Wall clock time and date at job start Wed Apr 1 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00200 * 2 1 4 4 C 1.46897 * 110.99822 * 123.95821 * 2 1 3 5 5 C 1.50701 * 109.46977 * 169.99847 * 4 2 1 6 6 O 1.21278 * 120.00317 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00002 * 179.97438 * 5 4 2 8 8 C 1.46959 * 120.59655 * 179.97438 * 7 5 4 9 9 C 1.53377 * 108.63353 * 124.79182 * 8 7 5 10 10 N 1.46961 * 108.63487 * 49.43080 * 9 8 7 11 11 S 1.65600 * 120.59905 * 124.74995 * 10 9 8 12 12 O 1.42102 * 104.27792 * 206.07123 * 11 10 9 13 13 O 1.42106 * 104.27349 * 333.92551 * 11 10 9 14 14 C 1.81401 * 104.45035 * 89.99710 * 11 10 9 15 15 C 1.53000 * 109.47051 * 180.02562 * 14 11 10 16 16 C 1.52996 * 109.46818 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47067 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00040 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00139 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00266 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47339 * 60.00057 * 21 19 17 23 23 H 1.48502 * 109.46894 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47058 * 299.99831 * 21 19 17 25 25 C 1.46973 * 118.80889 * 304.76689 * 10 9 8 26 26 C 1.46970 * 120.59189 * 0.02562 * 7 5 4 27 27 H 1.08997 * 109.47367 * 296.04515 * 1 2 3 28 28 H 1.09001 * 109.47284 * 56.04293 * 1 2 3 29 29 H 1.09001 * 109.47903 * 176.04424 * 1 2 3 30 30 H 1.08993 * 109.47244 * 183.95190 * 3 2 1 31 31 H 1.09001 * 109.47213 * 303.95359 * 3 2 1 32 32 H 1.09001 * 109.46818 * 63.95694 * 3 2 1 33 33 H 1.09000 * 109.47608 * 49.99776 * 4 2 1 34 34 H 1.09006 * 109.46936 * 289.99698 * 4 2 1 35 35 H 1.09004 * 109.60965 * 5.05288 * 8 7 5 36 36 H 1.08994 * 109.75385 * 244.62388 * 8 7 5 37 37 H 1.09005 * 109.60488 * 169.16668 * 9 8 7 38 38 H 1.08991 * 109.61036 * 289.67904 * 9 8 7 39 39 H 1.09003 * 109.46575 * 300.00268 * 14 11 10 40 40 H 1.08996 * 109.46965 * 59.99639 * 14 11 10 41 41 H 1.08994 * 109.47042 * 299.99934 * 15 14 11 42 42 H 1.09003 * 109.47087 * 59.99904 * 15 14 11 43 43 H 1.09004 * 109.47198 * 299.99735 * 16 15 14 44 44 H 1.08997 * 109.47547 * 59.99658 * 16 15 14 45 45 H 0.96995 * 120.00425 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.60872 * 295.48531 * 25 10 9 47 47 H 1.08995 * 109.74927 * 175.05500 * 25 10 9 48 48 H 1.08997 * 109.61088 * 354.94829 * 26 7 5 49 49 H 1.09000 * 109.61138 * 115.46490 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.4817 -0.9526 0.9728 6 8 4.0467 -0.4931 0.0030 7 7 4.1831 -1.6301 1.9031 8 6 5.6328 -1.8203 1.7553 9 6 6.3278 -1.2878 3.0146 10 7 5.6565 -1.8500 4.1949 11 16 6.5180 -2.6834 5.3375 12 8 5.5647 -3.5569 5.9271 13 8 7.6388 -3.1934 4.6283 14 6 7.0395 -1.4152 6.5252 15 6 7.8548 -2.0681 7.6432 16 6 8.2952 -0.9984 8.6445 17 6 9.0987 -1.6413 9.7454 18 1 9.2778 -2.7063 9.7320 19 6 9.6062 -0.8698 10.7692 20 7 9.3887 0.4271 10.7854 21 14 10.6029 -1.6667 12.1335 22 1 11.8007 -2.3242 11.5522 23 1 11.0302 -0.6285 13.1055 24 1 9.7694 -2.6809 12.8278 25 6 4.2066 -1.6598 4.3427 26 6 3.5115 -2.1929 3.0831 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3635 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8722 0.9233 33 1 1.5089 -1.7407 1.1756 34 1 1.7974 -0.2248 2.0628 35 1 5.9866 -1.2715 0.8825 36 1 5.8549 -2.8806 1.6356 37 1 7.3749 -1.5908 3.0104 38 1 6.2592 -0.2003 3.0381 39 1 7.6521 -0.6710 6.0163 40 1 6.1599 -0.9324 6.9507 41 1 7.2426 -2.8126 8.1520 42 1 8.7345 -2.5507 7.2172 43 1 8.9076 -0.2542 8.1353 44 1 7.4158 -0.5154 9.0705 45 1 9.7460 0.9699 11.5054 46 1 3.9871 -0.5988 4.4608 47 1 3.8506 -2.2065 5.2159 48 1 2.4644 -1.8903 3.0871 49 1 3.5805 -3.2805 3.0593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068881110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:40 Heat of formation + Delta-G solvation = -90.993095 kcal Electronic energy + Delta-G solvation = -29106.888434 eV Core-core repulsion = 25003.706754 eV Total energy + Delta-G solvation = -4103.181680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.60834 -38.25242 -37.09779 -36.80878 -35.86035 -34.72517 -34.27561 -32.23061 -31.93560 -29.29309 -27.92419 -27.87433 -27.07026 -24.41105 -23.75690 -23.10919 -21.94703 -20.66966 -19.87535 -18.61535 -18.01198 -16.96044 -16.71556 -16.64352 -16.28881 -16.21625 -15.82505 -15.23970 -15.20693 -15.12068 -14.83995 -14.67079 -14.47385 -14.21767 -13.74247 -13.42947 -12.93550 -12.77933 -12.70851 -12.54089 -12.40642 -12.32966 -12.27388 -12.08491 -12.04623 -11.94224 -11.85453 -11.78468 -11.49529 -11.38472 -11.16935 -10.92992 -10.92200 -10.48603 -10.04760 -10.00303 -9.86887 -9.42432 -9.19309 -8.81695 -8.69098 -8.44149 -6.09134 -4.12577 0.29943 2.28960 2.37916 2.68216 3.29549 3.33649 3.36628 3.53133 3.88974 4.05283 4.14438 4.28013 4.39442 4.51949 4.59714 4.70454 4.76261 4.82818 4.84304 4.95089 4.95832 5.02259 5.08720 5.13337 5.15455 5.21746 5.22388 5.27186 5.39102 5.41785 5.42983 5.57740 5.71624 5.76172 5.82416 6.07918 6.16568 6.29195 6.38362 6.43151 6.55528 6.81353 7.02553 7.52029 7.61699 7.86147 7.88339 8.28549 8.93373 9.52304 11.01976 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.002007 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.809189 B =13945.015774 C =14334.152097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.017 3.983 4 C 0.035 3.965 5 C 0.518 3.482 6 O -0.522 6.522 7 N -0.612 5.612 8 C 0.102 3.898 9 C 0.104 3.896 10 N -1.005 6.005 11 S 2.596 3.404 12 O -0.958 6.958 13 O -0.957 6.957 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.102 3.898 26 C 0.095 3.905 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.042 -0.495 -20.091 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.255 5.255 3 C -0.130 4.130 4 C -0.096 4.096 5 C 0.305 3.695 6 O -0.397 6.397 7 N -0.348 5.348 8 C -0.022 4.022 9 C -0.022 4.022 10 N -0.842 5.842 11 S 2.694 3.306 12 O -0.948 6.948 13 O -0.947 6.947 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.024 4.024 26 C -0.030 4.030 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.127 0.873 48 H 0.112 0.888 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.409 -1.242 -21.000 27.306 hybrid contribution 0.194 0.777 1.896 2.058 sum -17.215 -0.466 -19.104 25.720 Atomic orbital electron populations 1.22431 0.86539 1.02501 1.00890 1.61646 1.07689 1.14867 1.41323 1.22581 1.03016 0.87423 1.00013 1.22053 0.93011 1.00792 0.93754 1.20515 0.89193 0.77614 0.82170 1.90670 1.71179 1.48201 1.29674 1.48034 1.08687 1.55324 1.22716 1.21935 0.79339 1.02215 0.98753 1.21846 0.97591 0.98758 0.83986 1.57881 1.16422 1.74058 1.35797 1.05559 0.73946 0.76309 0.74810 1.93555 1.61021 1.61927 1.78341 1.93565 1.52976 1.77334 1.70812 1.30581 1.11298 1.17312 1.14658 1.21511 0.97757 1.00606 0.94681 1.19054 0.96548 0.92770 0.92338 1.21210 1.33372 0.94453 1.07582 0.92405 1.25022 0.96307 0.94848 0.98183 1.69939 1.45618 1.04730 1.33111 0.86607 0.80563 0.78981 0.81589 1.20096 1.21226 1.20112 1.21819 0.79682 1.02066 0.98829 1.22146 0.96712 0.99515 0.84622 0.95450 0.90860 0.91179 0.89324 0.91311 0.96030 0.87750 0.91672 0.87741 0.90621 0.87390 0.90808 0.85436 0.85479 0.91582 0.91566 0.96134 0.96152 0.92807 0.90826 0.87321 0.88757 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.06 0.57 0.71 16 2 N -0.53 -4.38 4.76 -252.73 -1.20 -5.59 16 3 C 0.02 0.14 9.21 60.06 0.55 0.70 16 4 C 0.03 0.24 3.79 -4.98 -0.02 0.22 16 5 C 0.52 5.02 7.42 -10.98 -0.08 4.94 16 6 O -0.52 -6.89 13.72 5.56 0.08 -6.81 16 7 N -0.61 -5.25 2.95 -172.45 -0.51 -5.76 16 8 C 0.10 0.93 6.59 -3.60 -0.02 0.90 16 9 C 0.10 0.95 6.58 -3.60 -0.02 0.92 16 10 N -1.00 -10.04 3.20 -113.22 -0.36 -10.40 16 11 S 2.60 35.08 5.45 -107.50 -0.59 34.49 16 12 O -0.96 -15.10 16.60 -57.54 -0.96 -16.05 16 13 O -0.96 -15.52 16.60 -57.54 -0.95 -16.47 16 14 C -0.61 -8.78 6.18 37.16 0.23 -8.55 16 15 C -0.11 -2.08 5.16 -26.73 -0.14 -2.22 16 16 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 17 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 21 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.10 0.78 6.57 -3.56 -0.02 0.76 16 26 C 0.09 0.62 6.51 -3.56 -0.02 0.60 16 27 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 30 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 31 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.10 0.54 7.83 -51.93 -0.41 0.13 16 34 H 0.07 0.35 7.70 -51.93 -0.40 -0.05 16 35 H 0.10 0.99 6.99 -51.93 -0.36 0.63 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.00 6.88 -51.93 -0.36 0.64 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.13 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.11 0.82 6.89 -51.93 -0.36 0.46 16 48 H 0.09 0.35 5.91 -51.93 -0.31 0.04 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -36.55 400.73 -10.64 -47.19 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -8.38 Total: -3.60 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 0.48 Total: -13.82 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -1.34 Total: -47.30 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.83 Total: -39.34 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 35.08 SS G_CDS: -0.59 Total: 34.49 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.55 -10.64 -47.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068881110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.802 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds