Wall clock time and date at job start Wed Apr 1 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00200 * 2 1 4 4 C 1.46897 * 110.99822 * 123.95821 * 2 1 3 5 5 C 1.50701 * 109.46977 * 169.99847 * 4 2 1 6 6 O 1.21278 * 120.00317 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00002 * 179.97438 * 5 4 2 8 8 C 1.46959 * 120.59655 * 179.97438 * 7 5 4 9 9 C 1.53377 * 108.63353 * 124.79182 * 8 7 5 10 10 N 1.46961 * 108.63487 * 49.43080 * 9 8 7 11 11 S 1.65600 * 120.59905 * 124.74995 * 10 9 8 12 12 O 1.42102 * 104.27792 * 206.07123 * 11 10 9 13 13 O 1.42106 * 104.27349 * 333.92551 * 11 10 9 14 14 C 1.81401 * 104.45035 * 89.99710 * 11 10 9 15 15 C 1.53000 * 109.47051 * 180.02562 * 14 11 10 16 16 C 1.52996 * 109.46818 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47067 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00040 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00139 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00266 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99812 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47339 * 60.00057 * 21 19 17 23 23 H 1.48502 * 109.46894 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47058 * 299.99831 * 21 19 17 25 25 C 1.46973 * 118.80889 * 304.76689 * 10 9 8 26 26 C 1.46970 * 120.59189 * 0.02562 * 7 5 4 27 27 H 1.08997 * 109.47367 * 296.04515 * 1 2 3 28 28 H 1.09001 * 109.47284 * 56.04293 * 1 2 3 29 29 H 1.09001 * 109.47903 * 176.04424 * 1 2 3 30 30 H 1.08993 * 109.47244 * 183.95190 * 3 2 1 31 31 H 1.09001 * 109.47213 * 303.95359 * 3 2 1 32 32 H 1.09001 * 109.46818 * 63.95694 * 3 2 1 33 33 H 1.09000 * 109.47608 * 49.99776 * 4 2 1 34 34 H 1.09006 * 109.46936 * 289.99698 * 4 2 1 35 35 H 1.09004 * 109.60965 * 5.05288 * 8 7 5 36 36 H 1.08994 * 109.75385 * 244.62388 * 8 7 5 37 37 H 1.09005 * 109.60488 * 169.16668 * 9 8 7 38 38 H 1.08991 * 109.61036 * 289.67904 * 9 8 7 39 39 H 1.09003 * 109.46575 * 300.00268 * 14 11 10 40 40 H 1.08996 * 109.46965 * 59.99639 * 14 11 10 41 41 H 1.08994 * 109.47042 * 299.99934 * 15 14 11 42 42 H 1.09003 * 109.47087 * 59.99904 * 15 14 11 43 43 H 1.09004 * 109.47198 * 299.99735 * 16 15 14 44 44 H 1.08997 * 109.47547 * 59.99658 * 16 15 14 45 45 H 0.96995 * 120.00425 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.60872 * 295.48531 * 25 10 9 47 47 H 1.08995 * 109.74927 * 175.05500 * 25 10 9 48 48 H 1.08997 * 109.61088 * 354.94829 * 26 7 5 49 49 H 1.09000 * 109.61138 * 115.46490 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.4817 -0.9526 0.9728 6 8 4.0467 -0.4931 0.0030 7 7 4.1831 -1.6301 1.9031 8 6 5.6328 -1.8203 1.7553 9 6 6.3278 -1.2878 3.0146 10 7 5.6565 -1.8500 4.1949 11 16 6.5180 -2.6834 5.3375 12 8 5.5647 -3.5569 5.9271 13 8 7.6388 -3.1934 4.6283 14 6 7.0395 -1.4152 6.5252 15 6 7.8548 -2.0681 7.6432 16 6 8.2952 -0.9984 8.6445 17 6 9.0987 -1.6413 9.7454 18 1 9.2778 -2.7063 9.7320 19 6 9.6062 -0.8698 10.7692 20 7 9.3887 0.4271 10.7854 21 14 10.6029 -1.6667 12.1335 22 1 11.8007 -2.3242 11.5522 23 1 11.0302 -0.6285 13.1055 24 1 9.7694 -2.6809 12.8278 25 6 4.2066 -1.6598 4.3427 26 6 3.5115 -2.1929 3.0831 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3635 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8722 0.9233 33 1 1.5089 -1.7407 1.1756 34 1 1.7974 -0.2248 2.0628 35 1 5.9866 -1.2715 0.8825 36 1 5.8549 -2.8806 1.6356 37 1 7.3749 -1.5908 3.0104 38 1 6.2592 -0.2003 3.0381 39 1 7.6521 -0.6710 6.0163 40 1 6.1599 -0.9324 6.9507 41 1 7.2426 -2.8126 8.1520 42 1 8.7345 -2.5507 7.2172 43 1 8.9076 -0.2542 8.1353 44 1 7.4158 -0.5154 9.0705 45 1 9.7460 0.9699 11.5054 46 1 3.9871 -0.5988 4.4608 47 1 3.8506 -2.2065 5.2159 48 1 2.4644 -1.8903 3.0871 49 1 3.5805 -3.2805 3.0593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068881110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:39 Heat of formation + Delta-G solvation = -118.891861 kcal Electronic energy + Delta-G solvation = -29108.098216 eV Core-core repulsion = 25003.706754 eV Total energy + Delta-G solvation = -4104.391461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.29418 -38.93379 -38.28347 -37.43834 -37.05548 -36.47113 -35.04211 -34.16941 -32.59342 -29.90480 -29.64025 -28.41745 -27.77761 -25.59619 -25.05977 -23.74347 -22.68499 -22.26696 -20.67954 -19.55774 -18.86635 -18.58915 -17.72100 -17.51095 -17.21295 -17.03533 -16.86542 -16.50288 -16.21410 -15.81140 -15.77752 -15.51138 -15.47023 -15.30821 -14.51348 -14.41912 -14.10617 -14.06408 -13.62434 -13.53834 -13.53202 -13.23284 -13.19930 -13.17241 -12.99503 -12.88684 -12.73979 -12.71114 -12.66132 -12.50459 -12.42113 -12.26045 -12.19987 -12.00613 -11.75788 -11.39682 -11.12492 -10.77849 -10.58058 -10.50193 -9.50096 -9.26976 -8.23477 -6.34663 -0.80867 1.39905 1.42256 1.50215 1.54238 1.60802 1.93371 2.39146 2.78461 3.03132 3.09862 3.11054 3.43081 3.58074 3.80992 3.82959 3.93450 4.13069 4.19721 4.22504 4.28133 4.29358 4.38287 4.40173 4.40262 4.50262 4.57998 4.62654 4.68865 4.71381 4.74261 4.84738 4.87187 4.96293 5.03644 5.06372 5.08429 5.11444 5.41290 5.44156 5.50060 5.61689 5.78305 5.91579 6.06527 6.18536 6.39315 6.80937 7.17751 7.34742 8.87663 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.002007 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.809189 B =13945.015774 C =14334.152097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.023 3.977 4 C 0.037 3.963 5 C 0.513 3.487 6 O -0.565 6.565 7 N -0.611 5.611 8 C 0.101 3.899 9 C 0.104 3.896 10 N -0.997 5.997 11 S 2.625 3.375 12 O -0.978 6.978 13 O -0.985 6.985 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.554 4.554 18 H 0.061 0.939 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.267 1.267 25 C 0.092 3.908 26 C 0.093 3.907 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.001 0.999 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.130 0.870 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.730 -0.992 -19.922 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.125 4.125 4 C -0.093 4.093 5 C 0.302 3.698 6 O -0.443 6.443 7 N -0.345 5.345 8 C -0.024 4.024 9 C -0.022 4.022 10 N -0.836 5.836 11 S 2.722 3.278 12 O -0.968 6.968 13 O -0.975 6.975 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.592 4.592 18 H 0.079 0.921 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.033 4.033 26 C -0.031 4.031 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.131 0.869 48 H 0.148 0.852 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.108 -1.758 -20.798 28.298 hybrid contribution 0.668 0.955 1.774 2.122 sum -18.440 -0.803 -19.025 26.507 Atomic orbital electron populations 1.22459 0.84861 1.03326 1.01499 1.61609 1.09271 1.14744 1.42446 1.22461 1.01366 0.88024 1.00699 1.22135 0.90810 1.02088 0.94297 1.21101 0.90394 0.76784 0.81518 1.90657 1.72214 1.49985 1.31480 1.48117 1.08355 1.54858 1.23135 1.21863 0.80200 1.01887 0.98406 1.21939 0.97386 0.99493 0.83360 1.57583 1.17444 1.73800 1.34761 1.04473 0.73197 0.75687 0.74424 1.93524 1.61460 1.62767 1.79090 1.93527 1.54579 1.78046 1.71334 1.30564 1.11581 1.18101 1.13737 1.21309 0.98659 0.99336 0.95258 1.18954 0.95213 0.93626 0.92913 1.21720 1.33837 0.94898 1.08705 0.92112 1.25942 0.97452 0.95410 1.00807 1.70056 1.46698 1.06105 1.34070 0.85535 0.79108 0.78207 0.78439 1.19288 1.20669 1.19142 1.22157 0.77837 1.03688 0.99636 1.22348 0.98267 0.99453 0.83025 0.94320 0.90853 0.90166 0.91932 0.91023 0.94989 0.85538 0.89395 0.88488 0.90944 0.87746 0.89403 0.84126 0.83652 0.91401 0.91725 0.98087 0.97837 0.92633 0.88704 0.86869 0.85214 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.57 127.69 1.22 1.45 16 2 N -0.56 -8.15 4.76 -953.49 -4.53 -12.69 16 3 C 0.02 0.35 9.21 127.69 1.18 1.52 16 4 C 0.04 0.41 3.79 85.56 0.32 0.74 16 5 C 0.51 9.19 7.42 87.66 0.65 9.84 16 6 O -0.57 -14.91 13.72 -3.02 -0.04 -14.95 16 7 N -0.61 -9.33 2.95 -817.90 -2.41 -11.74 16 8 C 0.10 1.77 6.59 86.42 0.57 2.34 16 9 C 0.10 1.76 6.58 86.42 0.57 2.33 16 10 N -1.00 -18.05 3.20 -512.13 -1.64 -19.69 16 11 S 2.63 67.91 5.45 -56.49 -0.31 67.60 16 12 O -0.98 -29.47 16.60 -127.65 -2.12 -31.59 16 13 O -0.98 -31.39 16.60 -127.65 -2.12 -33.51 16 14 C -0.61 -17.09 6.18 71.98 0.44 -16.64 16 15 C -0.11 -4.18 5.16 30.59 0.16 -4.02 16 16 C 0.03 1.58 4.97 29.85 0.15 1.73 16 17 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 19 C 0.00 0.12 5.46 84.66 0.46 0.59 16 20 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 21 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C 0.09 1.14 6.57 86.43 0.57 1.71 16 26 C 0.09 0.94 6.51 86.43 0.56 1.50 16 27 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 29 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 30 H 0.06 1.31 5.88 -2.39 -0.01 1.29 16 31 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 32 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.13 0.83 7.83 -2.39 -0.02 0.81 16 34 H 0.09 0.59 7.70 -2.38 -0.02 0.57 16 35 H 0.10 1.87 6.99 -2.39 -0.02 1.85 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.86 6.88 -2.38 -0.02 1.85 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.14 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 1.37 6.89 -2.39 -0.02 1.35 16 48 H 0.13 0.39 5.91 -2.39 -0.01 0.38 16 49 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.98 400.73 -2.85 -82.83 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.92 Total: 10.80 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 7.09 Total: -27.81 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -8.30 Total: -99.10 kcal Atomic # 8 Polarization: -75.78 SS G_CDS: -4.28 Total: -80.06 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 67.91 SS G_CDS: -0.31 Total: 67.60 kcal Total: -79.98 -2.85 -82.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068881110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.066 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds