Wall clock time and date at job start Wed Apr 1 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 110.99928 * 2 1 4 4 C 1.53235 * 109.34444 * 187.25484 * 3 2 1 5 5 N 1.47086 * 108.52123 * 306.17141 * 4 3 2 6 6 C 1.34773 * 120.88194 * 231.18807 * 5 4 3 7 7 O 1.21282 * 120.00212 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99757 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.46754 * 179.97438 * 8 6 5 10 10 N 1.46506 * 109.47045 * 179.97438 * 9 8 6 11 11 S 1.65597 * 120.00079 * 164.72323 * 10 9 8 12 12 O 1.42094 * 104.27779 * 181.07288 * 11 10 9 13 13 O 1.42104 * 104.27939 * 308.93259 * 11 10 9 14 14 C 1.81403 * 104.44731 * 65.00319 * 11 10 9 15 15 C 1.53001 * 109.47061 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47122 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.46998 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99805 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99946 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99739 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47220 * 90.00335 * 21 19 17 23 23 H 1.48505 * 109.46989 * 209.99482 * 21 19 17 24 24 H 1.48492 * 109.47373 * 329.99887 * 21 19 17 25 25 C 1.47083 * 118.23322 * 51.45043 * 5 4 3 26 26 C 1.46894 * 111.00200 * 124.30158 * 2 1 3 27 27 H 1.08999 * 109.47371 * 59.99981 * 1 2 3 28 28 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47319 * 300.00028 * 1 2 3 30 30 H 1.09003 * 109.49606 * 67.29339 * 3 2 1 31 31 H 1.09005 * 109.52126 * 307.22983 * 3 2 1 32 32 H 1.08998 * 109.63369 * 186.46577 * 4 3 2 33 33 H 1.09000 * 109.79249 * 65.97244 * 4 3 2 34 34 H 1.08997 * 109.46918 * 60.00080 * 8 6 5 35 35 H 1.08996 * 109.46854 * 300.00038 * 8 6 5 36 36 H 1.08999 * 109.47565 * 60.00266 * 9 8 6 37 37 H 1.09000 * 109.47473 * 300.00267 * 9 8 6 38 38 H 0.97005 * 119.99811 * 345.00302 * 10 9 8 39 39 H 1.09003 * 109.46906 * 299.99935 * 14 11 10 40 40 H 1.09000 * 109.47298 * 59.99821 * 14 11 10 41 41 H 1.09003 * 109.47261 * 300.00372 * 15 14 11 42 42 H 1.09000 * 109.47101 * 59.99835 * 15 14 11 43 43 H 1.09003 * 109.46948 * 300.00134 * 16 15 14 44 44 H 1.09000 * 109.47194 * 59.99981 * 16 15 14 45 45 H 0.97004 * 120.00080 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.62730 * 68.25914 * 25 5 4 47 47 H 1.09004 * 109.62654 * 188.83475 * 25 5 4 48 48 H 1.09008 * 109.49456 * 292.70927 * 26 2 1 49 49 H 1.09003 * 109.49187 * 52.75796 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3313 -0.1826 5 7 4.0870 0.4461 0.8442 6 6 5.1055 0.8584 1.6245 7 8 5.5640 1.9725 1.4848 8 6 5.6747 -0.0649 2.6708 9 6 6.8119 0.6423 3.4107 10 7 7.3649 -0.2551 4.4282 11 16 8.8308 0.0818 5.1208 12 8 9.0492 -0.9960 6.0207 13 8 9.6979 0.3015 4.0166 14 6 8.5567 1.6263 6.0320 15 6 9.8543 2.0467 6.7250 16 6 9.6233 3.3497 7.4930 17 6 10.9013 3.7635 8.1761 18 1 11.7895 3.1580 8.0724 19 6 10.9365 4.9152 8.9334 20 7 9.8550 5.6528 9.0591 21 14 12.5208 5.4284 9.7795 22 1 13.3083 6.2989 8.8698 23 1 12.1989 6.1745 11.0225 24 1 13.3147 4.2203 10.1188 25 6 3.5204 -0.9031 0.9926 26 6 1.9954 -0.7728 1.1328 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.7555 1.8532 0.9479 31 1 1.5456 1.9342 -0.8180 32 1 3.9254 2.3352 -0.0689 33 1 3.7591 0.9470 -1.1733 34 1 6.0583 -0.9652 2.1909 35 1 4.8927 -0.3363 3.3800 36 1 6.4287 1.5428 3.8906 37 1 7.5937 0.9134 2.7012 38 1 6.8741 -1.0487 4.6933 39 1 8.2454 2.4071 5.3381 40 1 7.7787 1.4737 6.7800 41 1 10.1653 1.2657 7.4189 42 1 10.6327 2.1992 5.9773 43 1 9.3127 4.1305 6.7987 44 1 8.8449 3.1976 8.2407 45 1 9.8799 6.4632 9.5916 46 1 3.7606 -1.4999 0.1128 47 1 3.9322 -1.3771 1.8836 48 1 1.7555 -0.2613 2.0651 49 1 1.5452 -1.7655 1.1365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068881986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:13 Heat of formation + Delta-G solvation = -141.825247 kcal Electronic energy + Delta-G solvation = -28218.054326 eV Core-core repulsion = 24112.668399 eV Total energy + Delta-G solvation = -4105.385927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30338 -39.12439 -38.18627 -37.07765 -36.66442 -36.46585 -35.65267 -34.16663 -32.58052 -31.16276 -29.65831 -29.39101 -25.72166 -25.62805 -24.99670 -24.07067 -22.45837 -22.03327 -20.52422 -19.84016 -18.77342 -18.52154 -18.29384 -17.29515 -17.20742 -16.91450 -16.84918 -16.48262 -16.21487 -16.16621 -15.80569 -15.73015 -15.41701 -15.30520 -14.71279 -14.49392 -14.25274 -14.05365 -13.76141 -13.53357 -13.33264 -13.20714 -13.11652 -13.05571 -12.97491 -12.81005 -12.76066 -12.69548 -12.63297 -12.58714 -12.27428 -12.23998 -12.14417 -12.05940 -11.74884 -11.38849 -11.12569 -10.90686 -10.58534 -10.40731 -9.86132 -9.31380 -8.23386 -6.34686 -0.72945 1.39381 1.40608 1.51979 1.55756 1.67223 2.01990 2.39250 2.75657 2.92615 3.09979 3.24370 3.45562 3.70549 3.77311 3.90648 3.94679 3.98019 4.07805 4.11685 4.24485 4.31285 4.38733 4.42655 4.46171 4.58517 4.62917 4.64792 4.66981 4.74357 4.80746 4.84587 4.86050 4.96262 5.03434 5.03609 5.06874 5.07875 5.43323 5.44616 5.61924 5.78617 5.94776 6.00834 6.15724 6.18752 6.35444 6.81131 7.09341 7.34634 8.88194 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.001854 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.844180 B =15096.547251 C =16100.729407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.048 3.952 4 C 0.113 3.887 5 N -0.615 5.615 6 C 0.512 3.488 7 O -0.585 6.585 8 C -0.138 4.138 9 C 0.121 3.879 10 N -1.104 6.104 11 S 2.639 3.361 12 O -0.986 6.986 13 O -0.992 6.992 14 C -0.614 4.614 15 C -0.107 4.107 16 C 0.029 3.971 17 C -0.553 4.553 18 H 0.061 0.939 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.263 1.263 25 C 0.105 3.895 26 C 0.037 3.963 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.431 0.569 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.069 0.931 42 H 0.065 0.935 43 H -0.001 1.001 44 H 0.004 0.996 45 H 0.265 0.735 46 H 0.088 0.912 47 H 0.118 0.882 48 H 0.034 0.966 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.799 -17.741 -19.561 34.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.081 4.081 4 C -0.010 4.010 5 N -0.348 5.348 6 C 0.301 3.699 7 O -0.465 6.465 8 C -0.179 4.179 9 C -0.006 4.006 10 N -0.867 5.867 11 S 2.733 3.267 12 O -0.976 6.976 13 O -0.982 6.982 14 C -0.744 4.744 15 C -0.146 4.146 16 C -0.009 4.009 17 C -0.591 4.591 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.017 4.017 26 C -0.091 4.091 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.022 0.978 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.136 0.864 48 H 0.052 0.948 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.605 -17.627 -20.145 34.399 hybrid contribution -0.306 1.517 1.486 2.145 sum -21.911 -16.111 -18.660 32.982 Atomic orbital electron populations 1.22406 0.85825 1.03087 1.00931 1.61977 1.08988 1.13163 1.43620 1.22419 0.94392 0.90074 1.01232 1.21681 0.92536 0.95256 0.91519 1.48302 1.34175 1.16623 1.35736 1.21023 0.79240 0.87534 0.82105 1.90743 1.61200 1.23364 1.71196 1.21850 0.99198 0.99376 0.97483 1.21083 0.96940 0.92381 0.90182 1.55184 1.41369 1.36800 1.53321 1.03955 0.73222 0.75725 0.73794 1.93542 1.84638 1.52139 1.67279 1.93539 1.65192 1.87107 1.52341 1.30533 1.07684 1.21776 1.14398 1.21309 0.93817 1.00118 0.99321 1.18975 0.95968 0.91739 0.94207 1.21754 0.97909 1.08610 1.30783 0.92034 1.25974 1.00100 0.96463 0.97212 1.70080 1.30011 1.15681 1.41287 0.85443 0.79111 0.78585 0.77912 1.19811 1.20487 1.18744 1.22270 0.92572 0.81992 1.04817 1.22677 0.95113 0.99928 0.91408 0.90767 0.89958 0.95886 0.95483 0.88401 0.90490 0.90108 0.85264 0.84617 0.90802 0.91245 0.73173 0.84421 0.83385 0.91195 0.91663 0.98220 0.97809 0.92649 0.89397 0.86402 0.94781 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.58 127.69 1.22 1.39 16 2 N -0.55 -5.06 4.88 -920.54 -4.49 -9.55 16 3 C 0.05 0.53 5.62 86.38 0.49 1.02 16 4 C 0.11 1.60 6.60 86.35 0.57 2.17 16 5 N -0.62 -8.25 3.00 -817.04 -2.45 -10.70 16 6 C 0.51 9.33 7.71 87.66 0.68 10.00 16 7 O -0.58 -16.56 15.43 -3.04 -0.05 -16.61 16 8 C -0.14 -1.54 4.21 29.85 0.13 -1.42 16 9 C 0.12 2.24 5.42 86.38 0.47 2.71 16 10 N -1.10 -19.53 5.89 -187.48 -1.10 -20.64 16 11 S 2.64 73.20 5.46 -56.49 -0.31 72.89 16 12 O -0.99 -32.15 18.08 -127.65 -2.31 -34.45 16 13 O -0.99 -34.67 17.49 -127.65 -2.23 -36.91 16 14 C -0.61 -18.86 6.07 71.98 0.44 -18.42 16 15 C -0.11 -4.43 5.16 30.59 0.16 -4.27 16 16 C 0.03 1.56 4.97 29.85 0.15 1.70 16 17 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.00 0.03 5.46 84.66 0.46 0.50 16 20 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 21 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 C 0.11 0.63 6.53 86.50 0.57 1.19 16 26 C 0.04 0.23 5.64 86.54 0.49 0.72 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 29 H 0.02 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.87 8.11 -2.38 -0.02 0.85 16 32 H 0.08 1.43 7.06 -2.39 -0.02 1.41 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.13 0.83 7.99 -2.39 -0.02 0.81 16 35 H 0.14 0.61 7.67 -2.39 -0.02 0.59 16 36 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.07 1.62 7.65 -2.39 -0.02 1.60 16 38 H 0.43 4.78 8.62 -96.74 -0.83 3.95 16 39 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 40 H 0.15 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.12 0.09 6.02 -2.39 -0.01 0.07 16 48 H 0.03 0.27 8.14 -2.38 -0.02 0.26 16 49 H 0.11 0.27 8.06 -2.39 -0.02 0.25 16 Total: -1.00 -85.14 407.56 -4.50 -89.64 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.10 Total: 10.51 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 6.04 Total: -34.56 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -7.77 Total: -97.49 kcal Atomic # 8 Polarization: -83.38 SS G_CDS: -4.59 Total: -87.97 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 73.20 SS G_CDS: -0.31 Total: 72.89 kcal Total: -85.14 -4.50 -89.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068881986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.186 kcal (2) G-P(sol) polarization free energy of solvation -85.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds