Wall clock time and date at job start Wed Apr 1 2020 04:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47416 * 2 1 4 4 S 1.65604 * 120.00048 * 164.99642 * 3 2 1 5 5 O 1.42098 * 104.27522 * 308.93082 * 4 3 2 6 6 O 1.42096 * 104.27465 * 181.07093 * 4 3 2 7 7 C 1.81397 * 104.44527 * 65.00036 * 4 3 2 8 8 H 1.08996 * 110.63547 * 61.89719 * 7 4 3 9 9 C 1.55140 * 110.70999 * 298.59666 * 7 4 3 10 10 C 1.54908 * 101.65303 * 205.96873 * 9 7 4 11 11 N 1.47843 * 104.79812 * 37.06849 * 10 9 7 12 12 C 1.46891 * 110.99986 * 213.63450 * 11 10 9 13 13 C 1.50702 * 109.47528 * 290.84306 * 12 11 10 14 14 O 1.21287 * 119.99578 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00755 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99455 * 0.02562 * 15 13 12 17 17 C 1.52997 * 109.47212 * 90.00023 * 16 15 13 18 18 C 1.46493 * 120.00646 * 179.97438 * 15 13 12 19 19 C 1.50695 * 109.47443 * 270.00265 * 18 15 13 20 20 H 1.08001 * 120.00056 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00480 * 179.97438 * 19 18 15 22 22 N 1.31505 * 120.00447 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99662 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46974 * 90.00094 * 23 21 19 25 25 H 1.48500 * 109.47191 * 210.00006 * 23 21 19 26 26 H 1.48501 * 109.47289 * 330.00624 * 23 21 19 27 27 C 1.47441 * 108.56883 * 335.90881 * 11 10 9 28 28 H 1.09010 * 109.46837 * 60.00148 * 1 2 3 29 29 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47233 * 300.00419 * 1 2 3 31 31 H 1.08998 * 109.47233 * 239.99581 * 2 1 3 32 32 H 1.09001 * 109.46599 * 119.99732 * 2 1 3 33 33 H 0.96997 * 119.99886 * 345.00074 * 3 2 1 34 34 H 1.09005 * 110.98557 * 324.05830 * 9 7 4 35 35 H 1.08997 * 110.99305 * 87.83788 * 9 7 4 36 36 H 1.08991 * 110.37185 * 278.23946 * 10 9 7 37 37 H 1.09003 * 110.36814 * 155.90211 * 10 9 7 38 38 H 1.09004 * 109.47465 * 170.84647 * 12 11 10 39 39 H 1.09002 * 109.47247 * 50.84327 * 12 11 10 40 40 H 1.09002 * 109.47068 * 210.00083 * 16 15 13 41 41 H 1.09001 * 109.47372 * 330.00170 * 16 15 13 42 42 H 1.08998 * 109.47533 * 59.99637 * 17 16 15 43 43 H 1.08996 * 109.47853 * 179.97438 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00008 * 17 16 15 45 45 H 1.09006 * 109.46911 * 30.00087 * 18 15 13 46 46 H 1.08996 * 109.47170 * 149.99599 * 18 15 13 47 47 H 0.97003 * 120.00287 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.89695 * 120.39388 * 27 11 10 49 49 H 1.09004 * 109.88561 * 241.42208 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6005 1.7000 0.3713 5 8 3.8179 1.0141 1.5966 6 8 3.6995 3.1156 0.2965 7 6 4.5450 0.9241 -0.9690 8 1 4.2924 1.3756 -1.9283 9 6 4.2997 -0.6075 -0.9977 10 6 5.6034 -1.1209 -1.6582 11 7 6.6683 -0.2474 -1.1208 12 6 7.7209 -0.0244 -2.1208 13 6 8.4805 -1.3065 -2.3452 14 8 8.1747 -2.3076 -1.7326 15 7 9.4990 -1.3410 -3.2272 16 6 9.8679 -0.1318 -3.9675 17 6 10.9176 0.6506 -3.1758 18 6 10.2377 -2.5871 -3.4449 19 6 11.3982 -2.6572 -2.4860 20 1 11.5687 -1.8537 -1.7849 21 6 12.2424 -3.7472 -2.5038 22 7 13.2547 -3.8086 -1.6667 23 14 11.9471 -5.1375 -3.7161 24 1 12.6828 -4.8602 -4.9759 25 1 12.4298 -6.4146 -3.1318 26 1 10.4942 -5.2428 -4.0043 27 6 6.0610 1.0282 -0.6992 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.4151 2.1089 -0.2174 34 1 4.1907 -1.0044 0.0116 35 1 3.4299 -0.8522 -1.6073 36 1 5.5436 -1.0233 -2.7421 37 1 5.7869 -2.1586 -1.3793 38 1 8.4049 0.7452 -1.7630 39 1 7.2687 0.2988 -3.0584 40 1 10.2784 -0.4110 -4.9379 41 1 8.9842 0.4897 -4.1121 42 1 11.8013 0.0293 -3.0311 43 1 11.1925 1.5500 -3.7267 44 1 10.5071 0.9298 -2.2054 45 1 9.5754 -3.4363 -3.2764 46 1 10.6103 -2.6145 -4.4688 47 1 13.8484 -4.5757 -1.6790 48 1 6.2382 1.1900 0.3640 49 1 6.4869 1.8499 -1.2752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092841806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:16 Heat of formation + Delta-G solvation = -87.669172 kcal Electronic energy + Delta-G solvation = -29676.332597 eV Core-core repulsion = 25573.295053 eV Total energy + Delta-G solvation = -4103.037544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.83580 -38.36788 -37.42550 -36.42022 -36.18222 -35.34751 -32.87722 -32.32887 -30.21895 -30.17913 -29.40992 -28.37125 -26.28550 -23.49444 -22.84473 -22.47435 -21.94343 -21.26904 -19.68517 -18.53769 -18.04519 -17.29409 -16.93008 -16.89457 -16.45327 -16.16376 -15.42494 -15.25486 -15.00913 -14.79478 -14.38540 -14.20181 -13.70105 -13.64268 -13.54596 -13.24844 -13.04474 -12.80174 -12.49163 -12.46479 -12.42211 -12.34592 -12.27542 -12.13257 -12.07905 -11.99304 -11.85847 -11.61207 -11.54208 -11.35987 -11.21371 -10.92024 -10.80522 -10.68377 -10.40433 -10.10320 -9.86224 -9.46952 -9.05108 -8.57455 -8.35078 -7.72180 -6.06457 -4.04599 -0.09490 2.33765 3.26611 3.29466 3.35014 3.36343 3.39015 3.53471 3.67071 3.86592 4.14446 4.27425 4.40821 4.43978 4.47958 4.61687 4.80904 4.91470 4.94645 5.01310 5.04837 5.09910 5.21871 5.26157 5.29420 5.36460 5.42952 5.45173 5.47620 5.50434 5.66148 5.69240 5.71650 5.76783 6.04452 6.08280 6.27982 6.51914 6.60739 6.77698 6.80374 6.83500 6.99231 7.36196 7.63111 8.25027 8.49414 8.96212 9.01725 9.53894 11.06831 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.002395 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.542720 B =11689.646883 C =12292.018813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -1.119 6.119 4 S 2.622 3.378 5 O -0.944 6.944 6 O -0.959 6.959 7 C -0.619 4.619 8 H 0.141 0.859 9 C -0.112 4.112 10 C 0.056 3.944 11 N -0.500 5.500 12 C 0.029 3.971 13 C 0.510 3.490 14 O -0.521 6.521 15 N -0.596 5.596 16 C 0.112 3.888 17 C -0.172 4.172 18 C 0.218 3.782 19 C -0.524 4.524 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.874 3.126 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.265 1.265 27 C 0.069 3.931 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.416 0.584 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.023 0.977 47 H 0.264 0.736 48 H 0.085 0.915 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.621 12.313 -3.559 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.880 5.880 4 S 2.713 3.287 5 O -0.933 6.933 6 O -0.949 6.949 7 C -0.729 4.729 8 H 0.159 0.841 9 C -0.151 4.151 10 C -0.072 4.072 11 N -0.225 5.225 12 C -0.102 4.102 13 C 0.295 3.705 14 O -0.396 6.396 15 N -0.330 5.330 16 C -0.012 4.012 17 C -0.230 4.230 18 C 0.097 3.903 19 C -0.563 4.563 20 H 0.095 0.905 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.701 3.299 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.189 1.189 27 C -0.060 4.060 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.949 11.715 -1.963 26.733 hybrid contribution -0.394 -0.208 -2.124 2.170 sum -24.343 11.507 -4.086 27.234 Atomic orbital electron populations 1.21964 0.94111 1.03106 1.02700 1.21526 0.96581 0.81637 1.02599 1.55627 1.28894 1.14673 1.88764 1.04786 0.73689 0.74166 0.76080 1.93625 1.84489 1.76092 1.39141 1.93605 1.85478 1.28386 1.87464 1.31890 1.10613 1.09716 1.20658 0.84097 1.22838 0.99743 0.88729 1.03744 1.23077 0.87511 0.99660 0.96942 1.63258 1.10618 1.10530 1.38059 1.22389 0.95177 0.98038 0.94582 1.20031 0.80958 0.89559 0.79912 1.90664 1.67086 1.35691 1.46162 1.47965 1.32299 1.11972 1.40714 1.21412 0.97541 0.86537 0.95739 1.22244 1.01267 0.99762 0.99748 1.19650 0.92238 0.82110 0.96297 1.21344 1.09099 1.06743 1.19101 0.90504 1.24866 0.94873 0.97762 0.95597 1.69891 1.16176 1.30594 1.36938 0.86880 0.79131 0.82429 0.81460 1.20246 1.21014 1.18935 1.22563 0.87455 0.93536 1.02483 0.92014 0.90860 0.91783 0.91217 0.89898 0.74957 0.88630 0.89009 0.93435 0.87814 0.87948 0.92280 0.90732 0.92138 0.90091 0.92802 0.93132 0.94237 0.95867 0.92620 0.89669 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 10.05 37.16 0.37 -0.23 16 2 C 0.10 0.53 5.86 -4.04 -0.02 0.50 16 3 N -1.12 -6.85 5.89 -10.61 -0.06 -6.92 16 4 S 2.62 24.26 4.94 -107.50 -0.53 23.73 16 5 O -0.94 -12.17 17.08 -57.54 -0.98 -13.15 16 6 O -0.96 -11.56 18.08 -57.54 -1.04 -12.60 16 7 C -0.62 -5.06 3.67 -24.90 -0.09 -5.15 16 8 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 9 C -0.11 -0.95 4.94 -24.59 -0.12 -1.08 16 10 C 0.06 0.69 5.74 -2.30 -0.01 0.68 16 11 N -0.50 -7.08 4.86 -232.69 -1.13 -8.22 16 12 C 0.03 0.42 3.61 -4.98 -0.02 0.40 16 13 C 0.51 10.07 7.47 -10.99 -0.08 9.98 16 14 O -0.52 -12.48 14.61 5.55 0.08 -12.40 16 15 N -0.60 -11.84 2.46 -175.06 -0.43 -12.27 16 16 C 0.11 1.67 5.98 -4.04 -0.02 1.64 16 17 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 18 C 0.22 5.21 4.27 -5.20 -0.02 5.19 16 19 C -0.52 -14.81 9.47 -34.44 -0.33 -15.14 16 20 H 0.08 2.38 7.66 -52.49 -0.40 1.98 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 23 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 27 C 0.07 0.75 6.48 -2.83 -0.02 0.74 16 28 H 0.06 0.19 8.14 -51.92 -0.42 -0.24 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.25 5.52 -51.93 -0.29 -0.04 16 32 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 33 H 0.42 1.87 8.62 -34.47 -0.30 1.58 16 34 H 0.10 0.86 7.64 -51.93 -0.40 0.46 16 35 H 0.09 0.49 6.22 -51.93 -0.32 0.17 16 36 H 0.05 0.54 7.62 -51.93 -0.40 0.14 16 37 H 0.10 1.54 7.38 -51.93 -0.38 1.15 16 38 H 0.10 1.35 7.08 -51.93 -0.37 0.98 16 39 H 0.06 0.68 7.11 -51.93 -0.37 0.31 16 40 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 41 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 42 H 0.08 1.53 7.25 -51.93 -0.38 1.16 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.76 7.22 -51.93 -0.38 0.39 16 45 H 0.04 1.03 6.48 -51.93 -0.34 0.69 16 46 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.09 0.95 7.78 -51.93 -0.40 0.55 16 49 H 0.08 0.67 7.55 -51.93 -0.39 0.28 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -39.00 392.84 -10.07 -49.07 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.91 Total: -0.34 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.08 Total: -2.72 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.85 Total: -54.26 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.94 Total: -38.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 24.26 SS G_CDS: -0.53 Total: 23.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.00 -10.07 -49.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092841806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.602 kcal (2) G-P(sol) polarization free energy of solvation -39.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds