Wall clock time and date at job start Wed Apr 1 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47416 * 2 1 4 4 S 1.65604 * 120.00048 * 164.99642 * 3 2 1 5 5 O 1.42098 * 104.27522 * 308.93082 * 4 3 2 6 6 O 1.42096 * 104.27465 * 181.07093 * 4 3 2 7 7 C 1.81397 * 104.44527 * 65.00036 * 4 3 2 8 8 H 1.08996 * 110.63547 * 61.89719 * 7 4 3 9 9 C 1.55140 * 110.70999 * 298.59666 * 7 4 3 10 10 C 1.54908 * 101.65303 * 205.96873 * 9 7 4 11 11 N 1.47843 * 104.79812 * 37.06849 * 10 9 7 12 12 C 1.46891 * 110.99986 * 213.63450 * 11 10 9 13 13 C 1.50702 * 109.47528 * 290.84306 * 12 11 10 14 14 O 1.21287 * 119.99578 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00755 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99455 * 0.02562 * 15 13 12 17 17 C 1.52997 * 109.47212 * 90.00023 * 16 15 13 18 18 C 1.46493 * 120.00646 * 179.97438 * 15 13 12 19 19 C 1.50695 * 109.47443 * 270.00265 * 18 15 13 20 20 H 1.08001 * 120.00056 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00480 * 179.97438 * 19 18 15 22 22 N 1.31505 * 120.00447 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99662 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46974 * 90.00094 * 23 21 19 25 25 H 1.48500 * 109.47191 * 210.00006 * 23 21 19 26 26 H 1.48501 * 109.47289 * 330.00624 * 23 21 19 27 27 C 1.47441 * 108.56883 * 335.90881 * 11 10 9 28 28 H 1.09010 * 109.46837 * 60.00148 * 1 2 3 29 29 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47233 * 300.00419 * 1 2 3 31 31 H 1.08998 * 109.47233 * 239.99581 * 2 1 3 32 32 H 1.09001 * 109.46599 * 119.99732 * 2 1 3 33 33 H 0.96997 * 119.99886 * 345.00074 * 3 2 1 34 34 H 1.09005 * 110.98557 * 324.05830 * 9 7 4 35 35 H 1.08997 * 110.99305 * 87.83788 * 9 7 4 36 36 H 1.08991 * 110.37185 * 278.23946 * 10 9 7 37 37 H 1.09003 * 110.36814 * 155.90211 * 10 9 7 38 38 H 1.09004 * 109.47465 * 170.84647 * 12 11 10 39 39 H 1.09002 * 109.47247 * 50.84327 * 12 11 10 40 40 H 1.09002 * 109.47068 * 210.00083 * 16 15 13 41 41 H 1.09001 * 109.47372 * 330.00170 * 16 15 13 42 42 H 1.08998 * 109.47533 * 59.99637 * 17 16 15 43 43 H 1.08996 * 109.47853 * 179.97438 * 17 16 15 44 44 H 1.09002 * 109.47153 * 300.00008 * 17 16 15 45 45 H 1.09006 * 109.46911 * 30.00087 * 18 15 13 46 46 H 1.08996 * 109.47170 * 149.99599 * 18 15 13 47 47 H 0.97003 * 120.00287 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.89695 * 120.39388 * 27 11 10 49 49 H 1.09004 * 109.88561 * 241.42208 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6005 1.7000 0.3713 5 8 3.8179 1.0141 1.5966 6 8 3.6995 3.1156 0.2965 7 6 4.5450 0.9241 -0.9690 8 1 4.2924 1.3756 -1.9283 9 6 4.2997 -0.6075 -0.9977 10 6 5.6034 -1.1209 -1.6582 11 7 6.6683 -0.2474 -1.1208 12 6 7.7209 -0.0244 -2.1208 13 6 8.4805 -1.3065 -2.3452 14 8 8.1747 -2.3076 -1.7326 15 7 9.4990 -1.3410 -3.2272 16 6 9.8679 -0.1318 -3.9675 17 6 10.9176 0.6506 -3.1758 18 6 10.2377 -2.5871 -3.4449 19 6 11.3982 -2.6572 -2.4860 20 1 11.5687 -1.8537 -1.7849 21 6 12.2424 -3.7472 -2.5038 22 7 13.2547 -3.8086 -1.6667 23 14 11.9471 -5.1375 -3.7161 24 1 12.6828 -4.8602 -4.9759 25 1 12.4298 -6.4146 -3.1318 26 1 10.4942 -5.2428 -4.0043 27 6 6.0610 1.0282 -0.6992 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.4151 2.1089 -0.2174 34 1 4.1907 -1.0044 0.0116 35 1 3.4299 -0.8522 -1.6073 36 1 5.5436 -1.0233 -2.7421 37 1 5.7869 -2.1586 -1.3793 38 1 8.4049 0.7452 -1.7630 39 1 7.2687 0.2988 -3.0584 40 1 10.2784 -0.4110 -4.9379 41 1 8.9842 0.4897 -4.1121 42 1 11.8013 0.0293 -3.0311 43 1 11.1925 1.5500 -3.7267 44 1 10.5071 0.9298 -2.2054 45 1 9.5754 -3.4363 -3.2764 46 1 10.6103 -2.6145 -4.4688 47 1 13.8484 -4.5757 -1.6790 48 1 6.2382 1.1900 0.3640 49 1 6.4869 1.8499 -1.2752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092841806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:14 Heat of formation + Delta-G solvation = -121.266694 kcal Electronic energy + Delta-G solvation = -29677.789495 eV Core-core repulsion = 25573.295053 eV Total energy + Delta-G solvation = -4104.494442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.08595 -39.52304 -38.26427 -37.13090 -36.93000 -36.77987 -34.82087 -33.50405 -31.74926 -30.58258 -30.21879 -29.99360 -27.66181 -24.27797 -24.12756 -23.87270 -22.70517 -22.32000 -20.36793 -19.95268 -19.08666 -18.77027 -18.11812 -17.78593 -17.66391 -17.22144 -16.65245 -16.22693 -15.96055 -15.76218 -15.63597 -15.28139 -14.90328 -14.64873 -14.61893 -14.46476 -14.18991 -14.08506 -13.89804 -13.69386 -13.45387 -13.29656 -13.20826 -13.02340 -13.00669 -12.88292 -12.76523 -12.57636 -12.52830 -12.43411 -12.36955 -12.18920 -12.07045 -12.01147 -11.83498 -11.59931 -11.51457 -10.79035 -10.58758 -10.34411 -9.41059 -9.31345 -8.30399 -6.34118 -0.81494 1.31647 1.36844 1.47013 1.71249 1.83011 2.22730 2.33005 2.66685 2.89570 3.00031 3.03669 3.29606 3.50033 3.68114 3.87299 4.06155 4.08117 4.13664 4.20247 4.27102 4.30309 4.35782 4.43393 4.48645 4.49841 4.56130 4.63032 4.67830 4.77960 4.84520 4.92266 4.95716 4.97151 5.04236 5.06231 5.13887 5.18871 5.38334 5.48661 5.52609 5.69308 5.86500 5.89201 6.12843 6.29169 6.67945 6.76799 7.26089 7.50386 8.86601 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.002395 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.542720 B =11689.646883 C =12292.018813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.093 3.907 3 N -1.108 6.108 4 S 2.634 3.366 5 O -0.989 6.989 6 O -0.989 6.989 7 C -0.599 4.599 8 H 0.180 0.820 9 C -0.107 4.107 10 C 0.053 3.947 11 N -0.537 5.537 12 C 0.041 3.959 13 C 0.498 3.502 14 O -0.576 6.576 15 N -0.604 5.604 16 C 0.105 3.895 17 C -0.166 4.166 18 C 0.225 3.775 19 C -0.526 4.526 20 H 0.030 0.970 21 C 0.006 3.994 22 N -0.949 5.949 23 Si 0.948 3.052 24 H -0.252 1.252 25 H -0.286 1.286 26 H -0.255 1.255 27 C 0.059 3.941 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.426 0.574 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.018 0.982 46 H 0.047 0.953 47 H 0.266 0.734 48 H 0.071 0.929 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.211 13.652 -6.963 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 N -0.871 5.871 4 S 2.728 3.272 5 O -0.979 6.979 6 O -0.979 6.979 7 C -0.711 4.711 8 H 0.198 0.802 9 C -0.146 4.146 10 C -0.075 4.075 11 N -0.262 5.262 12 C -0.089 4.089 13 C 0.286 3.714 14 O -0.455 6.455 15 N -0.336 5.336 16 C -0.017 4.017 17 C -0.225 4.225 18 C 0.103 3.897 19 C -0.564 4.564 20 H 0.048 0.952 21 C -0.191 4.191 22 N -0.589 5.589 23 Si 0.771 3.229 24 H -0.176 1.176 25 H -0.212 1.212 26 H -0.179 1.179 27 C -0.070 4.070 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.262 0.738 34 H 0.102 0.898 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -26.564 13.129 -5.374 30.114 hybrid contribution 0.427 -0.579 -0.986 1.221 sum -26.136 12.549 -6.360 29.682 Atomic orbital electron populations 1.21975 0.92931 1.03854 1.03010 1.21740 0.97626 0.80869 1.03026 1.55303 1.27657 1.15609 1.88515 1.04112 0.74279 0.73077 0.75741 1.93574 1.85439 1.76656 1.42193 1.93561 1.86231 1.30216 1.87902 1.31765 1.08369 1.09334 1.21590 0.80207 1.22880 0.99388 0.88654 1.03632 1.23018 0.88745 0.97694 0.98056 1.63073 1.11711 1.12552 1.38869 1.22315 0.95201 0.94587 0.96819 1.21132 0.80707 0.90948 0.78583 1.90636 1.68662 1.38171 1.48046 1.48087 1.31860 1.12233 1.41407 1.21790 0.99529 0.85069 0.95279 1.22173 0.99345 1.00486 1.00447 1.19299 0.90435 0.83993 0.95990 1.21578 1.10574 1.05375 1.18910 0.95155 1.25879 0.94477 1.00913 0.97862 1.70061 1.17660 1.31809 1.39411 0.85707 0.79681 0.78117 0.79390 1.17643 1.21153 1.17856 1.22643 0.89285 0.92888 1.02214 0.90734 0.89909 0.92475 0.89043 0.91310 0.73777 0.89802 0.85080 0.91830 0.91589 0.86722 0.88024 0.89492 0.87175 0.95066 0.88871 0.93601 0.96380 0.93514 0.92493 0.91091 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.05 71.98 0.72 -0.11 16 2 C 0.09 0.75 5.86 86.38 0.51 1.25 16 3 N -1.11 -11.13 5.89 -187.49 -1.10 -12.24 16 4 S 2.63 45.10 4.94 -56.49 -0.28 44.82 16 5 O -0.99 -25.78 17.08 -127.65 -2.18 -27.96 16 6 O -0.99 -22.51 18.08 -127.65 -2.31 -24.81 16 7 C -0.60 -7.92 3.67 31.78 0.12 -7.80 16 8 H 0.18 1.02 8.14 -2.39 -0.02 1.00 16 9 C -0.11 -1.57 4.94 31.98 0.16 -1.41 16 10 C 0.05 1.22 5.74 86.77 0.50 1.72 16 11 N -0.54 -14.49 4.86 -890.10 -4.33 -18.82 16 12 C 0.04 1.08 3.61 85.56 0.31 1.39 16 13 C 0.50 19.49 7.47 87.66 0.65 20.14 16 14 O -0.58 -28.57 14.61 -3.05 -0.04 -28.61 16 15 N -0.60 -23.48 2.46 -826.16 -2.03 -25.51 16 16 C 0.11 2.83 5.98 86.38 0.52 3.35 16 17 C -0.17 -4.81 10.24 71.98 0.74 -4.08 16 18 C 0.23 10.82 4.27 85.63 0.37 11.19 16 19 C -0.53 -30.88 9.47 25.60 0.24 -30.64 16 20 H 0.03 2.00 7.66 -2.91 -0.02 1.98 16 21 C 0.01 0.35 5.47 84.66 0.46 0.82 16 22 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 23 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 24 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 27 C 0.06 1.15 6.48 86.65 0.56 1.71 16 28 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.09 0.33 5.52 -2.39 -0.01 0.31 16 32 H 0.07 0.77 7.69 -2.39 -0.02 0.75 16 33 H 0.43 2.80 8.62 -96.75 -0.83 1.97 16 34 H 0.08 1.45 7.64 -2.38 -0.02 1.43 16 35 H 0.13 0.85 6.22 -2.39 -0.01 0.84 16 36 H 0.06 1.24 7.62 -2.39 -0.02 1.22 16 37 H 0.07 2.02 7.38 -2.39 -0.02 2.00 16 38 H 0.11 2.70 7.08 -2.38 -0.02 2.68 16 39 H 0.10 1.79 7.11 -2.39 -0.02 1.77 16 40 H 0.09 2.15 7.89 -2.39 -0.02 2.13 16 41 H 0.11 1.92 6.44 -2.39 -0.02 1.90 16 42 H 0.03 1.20 7.25 -2.39 -0.02 1.18 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.34 7.22 -2.39 -0.02 1.32 16 45 H 0.02 0.95 6.48 -2.38 -0.02 0.93 16 46 H 0.05 2.03 7.32 -2.39 -0.02 2.01 16 47 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 48 H 0.07 1.57 7.78 -2.39 -0.02 1.55 16 49 H 0.10 1.43 7.55 -2.38 -0.02 1.41 16 Total: -1.00 -92.82 392.84 -4.17 -96.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.07 Total: 12.57 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.85 Total: -2.47 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -7.16 Total: -117.09 kcal Atomic # 8 Polarization: -76.85 SS G_CDS: -4.53 Total: -81.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: 45.10 SS G_CDS: -0.28 Total: 44.82 kcal Total: -92.82 -4.17 -96.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092841806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.282 kcal (2) G-P(sol) polarization free energy of solvation -92.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds