Wall clock time and date at job start Wed Apr 1 2020 04:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46837 * 2 1 4 4 S 1.65603 * 119.99609 * 165.00471 * 3 2 1 5 5 O 1.42099 * 104.27540 * 308.92821 * 4 3 2 6 6 O 1.42104 * 104.27371 * 181.07310 * 4 3 2 7 7 C 1.81393 * 104.44979 * 64.99934 * 4 3 2 8 8 H 1.08996 * 110.78631 * 298.20367 * 7 4 3 9 9 C 1.54597 * 110.72325 * 61.45570 * 7 4 3 10 10 C 1.53998 * 105.13922 * 140.31431 * 9 7 4 11 11 N 1.47898 * 107.06044 * 1.22355 * 10 9 7 12 12 C 1.46898 * 111.00170 * 214.15803 * 11 10 9 13 13 C 1.50700 * 109.47452 * 176.63765 * 12 11 10 14 14 O 1.21284 * 119.99655 * 6.03591 * 13 12 11 15 15 N 1.34773 * 120.00354 * 186.04076 * 13 12 11 16 16 C 1.46502 * 119.99835 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47228 * 270.00316 * 16 15 13 18 18 C 1.46500 * 120.00357 * 179.97438 * 15 13 12 19 19 C 1.50701 * 109.47077 * 89.99490 * 18 15 13 20 20 H 1.08007 * 119.99870 * 0.02562 * 19 18 15 21 21 C 1.37873 * 119.99956 * 180.02562 * 19 18 15 22 22 N 1.31521 * 119.99879 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99985 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47528 * 269.99868 * 23 21 19 25 25 H 1.48503 * 109.47204 * 30.00135 * 23 21 19 26 26 H 1.48499 * 109.47251 * 150.00157 * 23 21 19 27 27 C 1.48535 * 105.81832 * 334.67141 * 11 10 9 28 28 H 1.09001 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46860 * 299.99609 * 1 2 3 30 30 H 1.08996 * 109.47631 * 59.99298 * 1 2 3 31 31 H 1.09000 * 109.46980 * 240.00498 * 2 1 3 32 32 H 1.08998 * 109.47524 * 120.00177 * 2 1 3 33 33 H 0.97001 * 119.99998 * 345.00579 * 3 2 1 34 34 H 1.08996 * 110.31067 * 21.39902 * 9 7 4 35 35 H 1.09002 * 110.30551 * 259.22509 * 9 7 4 36 36 H 1.08996 * 109.91634 * 241.86880 * 10 9 7 37 37 H 1.09002 * 110.08340 * 120.66937 * 10 9 7 38 38 H 1.09002 * 109.47405 * 56.63627 * 12 11 10 39 39 H 1.09003 * 109.47255 * 296.63651 * 12 11 10 40 40 H 1.09004 * 109.47263 * 30.00135 * 16 15 13 41 41 H 1.08997 * 109.46915 * 150.00045 * 16 15 13 42 42 H 1.09003 * 109.47025 * 59.99807 * 17 16 15 43 43 H 1.09005 * 109.47309 * 179.97438 * 17 16 15 44 44 H 1.08995 * 109.47036 * 300.00036 * 17 16 15 45 45 H 1.09000 * 109.46573 * 329.99738 * 18 15 13 46 46 H 1.08997 * 109.47310 * 209.99854 * 18 15 13 47 47 H 0.97000 * 119.99764 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.66631 * 157.64524 * 27 11 10 49 49 H 1.09000 * 110.66705 * 280.76943 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7002 0.3711 5 8 3.8180 1.0142 1.5964 6 8 3.6994 3.1158 0.2964 7 6 4.5449 0.9244 -0.9692 8 1 4.3789 -0.1527 -0.9863 9 6 4.1799 1.5559 -2.3323 10 6 5.5131 1.6633 -3.0957 11 7 6.5611 1.0945 -2.2207 12 6 7.8353 1.8042 -2.3958 13 6 8.8540 1.2529 -1.4317 14 8 8.5836 0.2863 -0.7509 15 7 10.0654 1.8340 -1.3259 16 6 10.3921 3.0014 -2.1487 17 6 11.0133 2.5378 -3.4678 18 6 11.0555 1.2985 -0.3883 19 6 11.8947 0.2579 -1.0839 20 1 11.7094 0.0197 -2.1210 21 6 12.8991 -0.3899 -0.3966 22 7 13.6318 -1.2977 -1.0039 23 14 13.2191 0.0216 1.3971 24 1 14.2109 1.1235 1.4830 25 1 11.9503 0.4464 2.0415 26 1 13.7503 -1.1778 2.0931 27 6 6.0547 1.2443 -0.8324 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4149 2.1090 -0.2173 34 1 3.7465 2.5453 -2.1869 35 1 3.4851 0.9132 -2.8730 36 1 5.7351 2.7086 -3.3098 37 1 5.4584 1.0975 -4.0257 38 1 7.6891 2.8667 -2.2017 39 1 8.1903 1.6669 -3.4172 40 1 9.4833 3.5671 -2.3540 41 1 11.1015 3.6344 -1.6156 42 1 10.3039 1.9047 -4.0008 43 1 11.2560 3.4064 -4.0801 44 1 11.9221 1.9722 -3.2625 45 1 10.5437 0.8446 0.4604 46 1 11.6967 2.1065 -0.0361 47 1 14.3382 -1.7537 -0.5202 48 1 6.5404 0.5308 -0.1667 49 1 6.2013 2.2644 -0.4774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092841808.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:18 Heat of formation + Delta-G solvation = -122.789273 kcal Electronic energy + Delta-G solvation = -29831.336732 eV Core-core repulsion = 25726.776266 eV Total energy + Delta-G solvation = -4104.560466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.15967 -39.44760 -38.31353 -37.17830 -36.98299 -36.76387 -34.84311 -33.59932 -31.77660 -30.63812 -30.16754 -29.94175 -27.63635 -24.31750 -24.15138 -23.77950 -22.95953 -22.16761 -20.36952 -19.95913 -19.09925 -18.76635 -18.15112 -18.07394 -17.28375 -17.11376 -16.78651 -16.50480 -16.09846 -15.69116 -15.62968 -15.24102 -15.08186 -14.72082 -14.61481 -14.50495 -14.20204 -14.14236 -13.82262 -13.72702 -13.38351 -13.32711 -13.25392 -13.05495 -12.95118 -12.85870 -12.73568 -12.61005 -12.54252 -12.50400 -12.39937 -12.30397 -12.06443 -12.02224 -11.85019 -11.60991 -11.51382 -10.80360 -10.58600 -10.40186 -9.50253 -9.39220 -8.32261 -6.35433 -0.86526 1.29996 1.35038 1.45320 1.67770 1.76846 2.19227 2.31194 2.61723 2.94433 3.01660 3.04505 3.18656 3.46116 3.65340 3.88198 4.02733 4.05345 4.08793 4.19529 4.29535 4.31056 4.36261 4.47434 4.48464 4.56716 4.63476 4.66444 4.71525 4.75654 4.78957 4.87486 4.93512 4.95922 5.03144 5.10392 5.11923 5.17215 5.37468 5.46600 5.51564 5.65188 5.69607 5.86734 6.12625 6.26898 6.65848 6.71329 7.24114 7.43873 8.84467 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.002703 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.388481 B =10357.789528 C =11183.388831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -1.104 6.104 4 S 2.629 3.371 5 O -0.998 6.998 6 O -0.983 6.983 7 C -0.583 4.583 8 H 0.161 0.839 9 C -0.098 4.098 10 C 0.032 3.968 11 N -0.510 5.510 12 C 0.035 3.965 13 C 0.494 3.506 14 O -0.577 6.577 15 N -0.602 5.602 16 C 0.102 3.898 17 C -0.164 4.164 18 C 0.223 3.777 19 C -0.524 4.524 20 H 0.034 0.966 21 C 0.010 3.990 22 N -0.946 5.946 23 Si 0.943 3.057 24 H -0.252 1.252 25 H -0.259 1.259 26 H -0.284 1.284 27 C 0.048 3.952 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.427 0.573 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.016 0.984 46 H 0.046 0.954 47 H 0.267 0.733 48 H 0.081 0.919 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.539 11.303 -5.962 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.867 5.867 4 S 2.723 3.277 5 O -0.988 6.988 6 O -0.973 6.973 7 C -0.694 4.694 8 H 0.179 0.821 9 C -0.136 4.136 10 C -0.096 4.096 11 N -0.235 5.235 12 C -0.095 4.095 13 C 0.282 3.718 14 O -0.456 6.456 15 N -0.334 5.334 16 C -0.019 4.019 17 C -0.222 4.222 18 C 0.100 3.900 19 C -0.562 4.562 20 H 0.053 0.947 21 C -0.188 4.188 22 N -0.587 5.587 23 Si 0.766 3.234 24 H -0.176 1.176 25 H -0.183 1.183 26 H -0.210 1.210 27 C -0.082 4.082 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.264 0.736 34 H 0.112 0.888 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -27.003 10.484 -4.900 29.379 hybrid contribution 0.794 0.073 0.439 0.910 sum -26.209 10.557 -4.460 28.605 Atomic orbital electron populations 1.21953 0.92548 1.03889 1.03121 1.21569 0.97867 0.80630 1.02778 1.55238 1.27266 1.15740 1.88505 1.04234 0.74532 0.73534 0.75411 1.93558 1.85615 1.76827 1.42787 1.93548 1.86211 1.29848 1.87703 1.31474 1.06747 1.15143 1.16075 0.82140 1.22292 0.98658 1.02109 0.90564 1.23093 0.89286 1.00024 0.97179 1.64566 1.02035 1.53101 1.03834 1.22346 0.89342 0.97622 1.00227 1.21177 0.83424 0.83316 0.83887 1.90623 1.79494 1.28248 1.47280 1.48098 1.13262 1.31155 1.40890 1.21828 1.02162 0.86391 0.91558 1.22149 1.00761 1.02054 0.97219 1.19336 0.87304 0.93973 0.89348 1.21535 1.15316 1.21186 0.98192 0.94731 1.25805 0.95510 0.94479 1.02992 1.70050 1.22200 1.27370 1.39044 0.85776 0.79412 0.78640 0.79525 1.17615 1.18311 1.20969 1.23023 0.91088 1.00339 0.93706 0.89869 0.92449 0.90509 0.89288 0.91672 0.73570 0.88764 0.85983 0.91139 0.87917 0.88794 0.85689 0.87367 0.89586 0.93294 0.88812 0.94938 0.96552 0.93577 0.92438 0.90028 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.05 71.98 0.72 -0.19 16 2 C 0.10 0.92 6.85 86.38 0.59 1.51 16 3 N -1.10 -13.16 5.85 -187.48 -1.10 -14.26 16 4 S 2.63 54.92 4.89 -56.49 -0.28 54.64 16 5 O -1.00 -30.21 17.50 -127.65 -2.23 -32.45 16 6 O -0.98 -25.13 17.59 -127.65 -2.25 -27.37 16 7 C -0.58 -10.96 3.69 31.80 0.12 -10.84 16 8 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 9 C -0.10 -1.19 6.49 31.48 0.20 -0.98 16 10 C 0.03 0.51 6.70 86.45 0.58 1.09 16 11 N -0.51 -13.62 5.11 -887.56 -4.54 -18.16 16 12 C 0.04 0.96 4.03 85.56 0.35 1.31 16 13 C 0.49 19.98 7.31 87.66 0.64 20.62 16 14 O -0.58 -29.19 13.87 -3.04 -0.04 -29.23 16 15 N -0.60 -24.28 2.46 -826.16 -2.03 -26.31 16 16 C 0.10 2.89 6.00 86.38 0.52 3.40 16 17 C -0.16 -4.74 10.24 71.98 0.74 -4.00 16 18 C 0.22 11.01 4.27 85.63 0.37 11.38 16 19 C -0.52 -30.93 9.48 25.60 0.24 -30.69 16 20 H 0.03 2.27 7.67 -2.91 -0.02 2.25 16 21 C 0.01 0.58 5.47 84.65 0.46 1.05 16 22 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 23 Si 0.94 45.54 27.47 68.60 1.88 47.43 16 24 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 26 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 27 C 0.05 1.36 5.04 86.65 0.44 1.80 16 28 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.84 7.69 -2.39 -0.02 0.83 16 33 H 0.43 3.32 8.62 -96.74 -0.83 2.49 16 34 H 0.09 0.91 7.41 -2.39 -0.02 0.89 16 35 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.89 7.68 -2.39 -0.02 0.87 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.92 6.92 -2.39 -0.02 1.90 16 39 H 0.13 2.96 7.41 -2.39 -0.02 2.95 16 40 H 0.11 2.09 6.28 -2.38 -0.01 2.07 16 41 H 0.09 2.25 7.89 -2.39 -0.02 2.24 16 42 H 0.05 1.40 7.41 -2.39 -0.02 1.38 16 43 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.03 1.24 7.26 -2.39 -0.02 1.22 16 45 H 0.02 0.89 6.48 -2.39 -0.02 0.87 16 46 H 0.05 2.07 7.32 -2.39 -0.02 2.06 16 47 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 48 H 0.08 2.98 6.43 -2.39 -0.02 2.96 16 49 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 Total: -1.00 -91.71 398.88 -4.25 -95.96 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.06 Total: 14.54 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.96 Total: -4.55 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -7.36 Total: -118.97 kcal Atomic # 8 Polarization: -84.53 SS G_CDS: -4.52 Total: -89.05 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.28 Total: 54.64 kcal Total: -91.71 -4.25 -95.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092841808.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.831 kcal (2) G-P(sol) polarization free energy of solvation -91.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds