Wall clock time and date at job start Wed Apr 1 2020 04:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47450 * 2 1 4 4 C 1.34775 * 119.99850 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00481 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99505 * 179.97438 * 4 3 2 7 7 N 1.46905 * 109.46759 * 174.16422 * 6 4 3 8 8 C 1.44053 * 110.99885 * 306.46248 * 7 6 4 9 9 C 1.54757 * 110.37267 * 220.51294 * 8 7 6 10 10 C 1.54932 * 109.76322 * 321.90881 * 9 8 7 11 11 N 1.43613 * 116.04643 * 318.49767 * 10 9 8 12 12 S 1.65596 * 120.56394 * 269.68891 * 11 10 9 13 13 O 1.42105 * 104.27769 * 206.06818 * 12 11 10 14 14 O 1.42104 * 104.27677 * 333.92405 * 12 11 10 15 15 C 1.81396 * 104.45047 * 89.99716 * 12 11 10 16 16 C 1.53008 * 109.47219 * 180.02562 * 15 12 11 17 17 C 1.50698 * 109.47021 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00150 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99704 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47240 * 89.99852 * 21 19 17 23 23 H 1.48502 * 109.46918 * 209.99614 * 21 19 17 24 24 H 1.48500 * 109.47231 * 329.99892 * 21 19 17 25 25 C 1.50188 * 118.87248 * 89.66260 * 11 10 9 26 26 C 1.46183 * 111.00353 * 64.17068 * 7 6 4 27 27 H 1.09005 * 109.46876 * 300.00103 * 1 2 3 28 28 H 1.09001 * 109.47085 * 60.00013 * 1 2 3 29 29 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47381 * 239.99622 * 2 1 3 31 31 H 1.09008 * 109.46778 * 119.99724 * 2 1 3 32 32 H 0.97001 * 119.99947 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47215 * 54.16367 * 6 4 3 34 34 H 1.08999 * 109.47623 * 294.15959 * 6 4 3 35 35 H 1.09005 * 109.33668 * 340.91582 * 8 7 6 36 36 H 1.08997 * 109.33601 * 100.58593 * 8 7 6 37 37 H 1.08997 * 109.55226 * 201.72350 * 9 8 7 38 38 H 1.09002 * 109.24670 * 81.90594 * 9 8 7 39 39 H 1.09001 * 108.13198 * 196.85679 * 10 9 8 40 40 H 1.09000 * 108.13728 * 80.14814 * 10 9 8 41 41 H 1.09004 * 109.47297 * 299.99909 * 15 12 11 42 42 H 1.09002 * 109.47321 * 60.00074 * 15 12 11 43 43 H 1.09004 * 109.46725 * 300.00030 * 16 15 12 44 44 H 1.09002 * 109.47101 * 59.99710 * 16 15 12 45 45 H 0.97001 * 120.00477 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.97210 * 51.10116 * 25 11 10 47 47 H 1.09000 * 109.96642 * 172.40441 * 25 11 10 48 48 H 1.09005 * 108.49710 * 25.70545 * 26 7 6 49 49 H 1.09002 * 108.49662 * 268.25525 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7056 0.0015 6 6 3.8458 3.0482 -0.0001 7 7 5.3080 3.0506 0.1415 8 6 5.7162 2.2899 1.2947 9 6 6.8722 3.0077 2.0320 10 6 7.8325 3.6505 1.0000 11 7 8.1319 2.8597 -0.1607 12 16 9.4263 1.8269 -0.1650 13 8 9.7820 1.7164 -1.5364 14 8 10.3252 2.3876 0.7821 15 6 8.7547 0.2568 0.4468 16 6 9.8680 -0.7918 0.4902 17 6 9.3102 -2.0960 0.9991 18 1 8.2661 -2.1695 1.2653 19 6 10.1327 -3.1954 1.1247 20 7 9.6458 -4.3337 1.5683 21 14 11.9387 -3.0680 0.6649 22 1 12.7246 -2.6544 1.8550 23 1 12.4221 -4.3884 0.1870 24 1 12.1052 -2.0601 -0.4130 25 6 7.2507 2.9848 -1.3705 26 6 5.9469 2.4148 -1.0094 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3881 2.1185 0.0004 33 1 3.3992 3.5918 0.8325 34 1 3.5709 3.5305 -0.9381 35 1 4.8691 2.1778 1.9715 36 1 6.0559 1.3047 0.9754 37 1 7.4210 2.2874 2.6385 38 1 6.4600 3.7841 2.6765 39 1 8.7705 3.8790 1.5060 40 1 7.3923 4.5901 0.6662 41 1 8.3517 0.4001 1.4494 42 1 7.9610 -0.0828 -0.2187 43 1 10.2714 -0.9352 -0.5123 44 1 10.6615 -0.4520 1.1559 45 1 10.2245 -5.1071 1.6571 46 1 7.1362 4.0345 -1.6407 47 1 7.6816 2.4298 -2.2038 48 1 5.2807 2.5039 -1.8676 49 1 6.0813 1.3558 -0.7891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111329238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:25 Heat of formation + Delta-G solvation = -87.983519 kcal Electronic energy + Delta-G solvation = -30614.389860 eV Core-core repulsion = 26511.338685 eV Total energy + Delta-G solvation = -4103.051175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.76272 -38.58227 -36.69927 -35.80541 -35.45815 -34.84576 -33.85715 -32.56647 -31.41639 -31.31275 -29.16854 -26.33152 -25.88351 -25.32973 -23.15178 -22.01105 -21.23834 -20.71879 -20.33363 -18.41052 -17.66441 -17.35433 -16.86973 -16.61950 -16.10866 -15.99796 -15.63614 -15.22229 -15.10830 -14.84307 -14.49984 -14.26832 -14.24268 -13.90809 -13.52642 -13.15502 -12.90196 -12.87156 -12.75409 -12.38984 -12.20245 -12.10973 -11.90230 -11.82099 -11.75766 -11.64439 -11.59318 -11.36625 -11.17541 -11.13637 -10.99633 -10.68980 -10.50971 -10.37931 -10.32682 -10.05444 -9.63320 -9.37405 -9.32295 -8.71911 -8.59428 -8.49544 -6.09373 -4.09725 0.77373 2.36691 2.88505 3.00241 3.31415 3.38283 3.43384 3.71671 4.29496 4.42080 4.44632 4.55903 4.68230 4.70605 4.73461 4.76731 4.96572 4.97825 5.08375 5.14197 5.22274 5.26489 5.32373 5.45199 5.48258 5.52379 5.55305 5.64336 5.66312 5.67683 5.74364 5.87602 5.93484 6.04130 6.07552 6.15798 6.20135 6.32497 6.42083 6.75663 6.86935 6.88814 6.91896 7.03642 7.18012 7.62756 7.95986 8.45272 8.93419 9.50547 11.03210 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.003789 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.540992 B = 7388.322901 C = 9454.167911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.734 5.734 4 C 0.472 3.528 5 O -0.525 6.525 6 C 0.032 3.968 7 N -0.485 5.485 8 C 0.044 3.956 9 C -0.139 4.139 10 C 0.128 3.872 11 N -0.996 5.996 12 S 2.587 3.413 13 O -0.967 6.967 14 O -0.965 6.965 15 C -0.583 4.583 16 C -0.006 4.006 17 C -0.515 4.515 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.868 3.132 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.130 3.870 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.031 0.969 44 H 0.027 0.973 45 H 0.265 0.735 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.066 0.934 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 18.394 -3.484 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.013 4.013 3 N -0.388 5.388 4 C 0.257 3.743 5 O -0.400 6.400 6 C -0.100 4.100 7 N -0.206 5.206 8 C -0.085 4.085 9 C -0.179 4.179 10 C 0.000 4.000 11 N -0.832 5.832 12 S 2.685 3.315 13 O -0.957 6.957 14 O -0.956 6.956 15 C -0.716 4.716 16 C -0.045 4.045 17 C -0.554 4.554 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.695 3.305 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.186 1.186 25 C 0.006 3.994 26 C -0.114 4.114 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.120 0.880 48 H 0.085 0.915 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.716 18.345 -3.690 25.768 hybrid contribution -0.567 -1.072 0.102 1.217 sum -18.282 17.273 -3.588 25.406 Atomic orbital electron populations 1.21997 0.94506 1.03341 1.02298 1.21314 0.94136 0.83136 1.02718 1.46226 1.07396 1.08901 1.76265 1.22218 0.82449 0.93372 0.76241 1.90804 1.54608 1.46492 1.48096 1.22607 0.90076 0.92328 1.04951 1.62474 1.03458 1.50703 1.03999 1.22352 0.97520 0.96596 0.92048 1.22806 0.96642 1.00686 0.97772 1.20656 0.99075 0.94368 0.85860 1.57765 1.47531 1.57918 1.19967 1.05706 0.74246 0.76867 0.74678 1.93523 1.81609 1.87129 1.33463 1.93522 1.61267 1.76406 1.64358 1.30387 1.11516 1.17606 1.12054 1.19393 0.92174 0.94771 0.98140 1.20867 0.98155 0.92228 1.44145 0.90435 1.24983 0.98619 0.95152 0.94378 1.69886 1.36145 1.01407 1.46099 0.86937 0.85657 0.78035 0.79898 1.19702 1.20814 1.18618 1.21027 0.88654 1.02829 0.86905 1.21707 0.96490 0.99424 0.93739 0.92055 0.92075 0.90746 0.91429 0.91376 0.76765 0.87700 0.87618 0.92664 0.90937 0.91405 0.90707 0.90419 0.90344 0.85853 0.85822 0.95105 0.95528 0.92491 0.90124 0.87973 0.91528 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 10.03 37.16 0.37 -0.41 16 2 C 0.11 0.87 6.39 -4.04 -0.03 0.85 16 3 N -0.73 -5.18 5.56 -60.29 -0.33 -5.51 16 4 C 0.47 4.65 6.91 -10.99 -0.08 4.57 16 5 O -0.52 -7.73 12.41 5.56 0.07 -7.66 16 6 C 0.03 0.23 5.56 -4.97 -0.03 0.20 16 7 N -0.49 -4.87 4.38 -241.60 -1.06 -5.93 16 8 C 0.04 0.53 4.02 -4.42 -0.02 0.51 16 9 C -0.14 -1.60 6.63 -24.79 -0.16 -1.77 16 10 C 0.13 1.59 5.26 -4.55 -0.02 1.56 16 11 N -1.00 -14.08 2.85 -115.67 -0.33 -14.41 16 12 S 2.59 47.73 5.45 -107.50 -0.59 47.15 16 13 O -0.97 -19.89 16.64 -57.54 -0.96 -20.84 16 14 O -0.97 -19.95 16.56 -57.54 -0.95 -20.90 16 15 C -0.58 -11.70 6.12 37.16 0.23 -11.47 16 16 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 17 C -0.51 -15.00 9.66 -34.44 -0.33 -15.33 16 18 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 21 Si 0.87 22.18 27.47 -169.99 -4.67 17.51 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 25 C 0.13 1.54 6.33 -4.94 -0.03 1.51 16 26 C 0.02 0.18 3.99 -7.17 -0.03 0.15 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.40 1.49 8.47 -40.82 -0.35 1.14 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.53 7.93 -51.93 -0.41 0.12 16 35 H 0.05 0.64 7.20 -51.93 -0.37 0.27 16 36 H 0.07 1.10 5.77 -51.93 -0.30 0.80 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.04 6.83 -51.93 -0.35 0.68 16 40 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 41 H 0.12 2.32 8.14 -51.92 -0.42 1.90 16 42 H 0.12 2.37 8.14 -51.92 -0.42 1.95 16 43 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 44 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.10 1.26 6.95 -51.93 -0.36 0.90 16 48 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 49 H 0.07 1.04 5.52 -51.93 -0.29 0.75 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -37.71 391.21 -10.73 -48.44 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.24 Total: 1.27 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.34 Total: -17.88 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.95 Total: -52.99 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -1.84 Total: -49.40 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 47.73 SS G_CDS: -0.59 Total: 47.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.71 -10.73 -48.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.542 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds