Wall clock time and date at job start Wed Apr 1 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47450 * 2 1 4 4 C 1.34775 * 119.99850 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00481 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99505 * 179.97438 * 4 3 2 7 7 N 1.46905 * 109.46759 * 174.16422 * 6 4 3 8 8 C 1.44053 * 110.99885 * 306.46248 * 7 6 4 9 9 C 1.54757 * 110.37267 * 220.51294 * 8 7 6 10 10 C 1.54932 * 109.76322 * 321.90881 * 9 8 7 11 11 N 1.43613 * 116.04643 * 318.49767 * 10 9 8 12 12 S 1.65596 * 120.56394 * 269.68891 * 11 10 9 13 13 O 1.42105 * 104.27769 * 206.06818 * 12 11 10 14 14 O 1.42104 * 104.27677 * 333.92405 * 12 11 10 15 15 C 1.81396 * 104.45047 * 89.99716 * 12 11 10 16 16 C 1.53008 * 109.47219 * 180.02562 * 15 12 11 17 17 C 1.50698 * 109.47021 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00150 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99704 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47240 * 89.99852 * 21 19 17 23 23 H 1.48502 * 109.46918 * 209.99614 * 21 19 17 24 24 H 1.48500 * 109.47231 * 329.99892 * 21 19 17 25 25 C 1.50188 * 118.87248 * 89.66260 * 11 10 9 26 26 C 1.46183 * 111.00353 * 64.17068 * 7 6 4 27 27 H 1.09005 * 109.46876 * 300.00103 * 1 2 3 28 28 H 1.09001 * 109.47085 * 60.00013 * 1 2 3 29 29 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47381 * 239.99622 * 2 1 3 31 31 H 1.09008 * 109.46778 * 119.99724 * 2 1 3 32 32 H 0.97001 * 119.99947 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47215 * 54.16367 * 6 4 3 34 34 H 1.08999 * 109.47623 * 294.15959 * 6 4 3 35 35 H 1.09005 * 109.33668 * 340.91582 * 8 7 6 36 36 H 1.08997 * 109.33601 * 100.58593 * 8 7 6 37 37 H 1.08997 * 109.55226 * 201.72350 * 9 8 7 38 38 H 1.09002 * 109.24670 * 81.90594 * 9 8 7 39 39 H 1.09001 * 108.13198 * 196.85679 * 10 9 8 40 40 H 1.09000 * 108.13728 * 80.14814 * 10 9 8 41 41 H 1.09004 * 109.47297 * 299.99909 * 15 12 11 42 42 H 1.09002 * 109.47321 * 60.00074 * 15 12 11 43 43 H 1.09004 * 109.46725 * 300.00030 * 16 15 12 44 44 H 1.09002 * 109.47101 * 59.99710 * 16 15 12 45 45 H 0.97001 * 120.00477 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.97210 * 51.10116 * 25 11 10 47 47 H 1.09000 * 109.96642 * 172.40441 * 25 11 10 48 48 H 1.09005 * 108.49710 * 25.70545 * 26 7 6 49 49 H 1.09002 * 108.49662 * 268.25525 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7056 0.0015 6 6 3.8458 3.0482 -0.0001 7 7 5.3080 3.0506 0.1415 8 6 5.7162 2.2899 1.2947 9 6 6.8722 3.0077 2.0320 10 6 7.8325 3.6505 1.0000 11 7 8.1319 2.8597 -0.1607 12 16 9.4263 1.8269 -0.1650 13 8 9.7820 1.7164 -1.5364 14 8 10.3252 2.3876 0.7821 15 6 8.7547 0.2568 0.4468 16 6 9.8680 -0.7918 0.4902 17 6 9.3102 -2.0960 0.9991 18 1 8.2661 -2.1695 1.2653 19 6 10.1327 -3.1954 1.1247 20 7 9.6458 -4.3337 1.5683 21 14 11.9387 -3.0680 0.6649 22 1 12.7246 -2.6544 1.8550 23 1 12.4221 -4.3884 0.1870 24 1 12.1052 -2.0601 -0.4130 25 6 7.2507 2.9848 -1.3705 26 6 5.9469 2.4148 -1.0094 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3881 2.1185 0.0004 33 1 3.3992 3.5918 0.8325 34 1 3.5709 3.5305 -0.9381 35 1 4.8691 2.1778 1.9715 36 1 6.0559 1.3047 0.9754 37 1 7.4210 2.2874 2.6385 38 1 6.4600 3.7841 2.6765 39 1 8.7705 3.8790 1.5060 40 1 7.3923 4.5901 0.6662 41 1 8.3517 0.4001 1.4494 42 1 7.9610 -0.0828 -0.2187 43 1 10.2714 -0.9352 -0.5123 44 1 10.6615 -0.4520 1.1559 45 1 10.2245 -5.1071 1.6571 46 1 7.1362 4.0345 -1.6407 47 1 7.6816 2.4298 -2.2038 48 1 5.2807 2.5039 -1.8676 49 1 6.0813 1.3558 -0.7891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111329238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:24 Heat of formation + Delta-G solvation = -119.609819 kcal Electronic energy + Delta-G solvation = -30615.761279 eV Core-core repulsion = 26511.338685 eV Total energy + Delta-G solvation = -4104.422594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.57624 -39.47108 -38.27206 -37.08548 -36.55976 -35.95418 -35.75838 -33.58319 -33.45614 -31.98694 -29.95742 -27.97587 -27.15999 -26.23961 -23.79059 -23.49186 -22.35311 -22.00347 -21.17659 -19.85000 -19.33334 -18.55887 -18.13580 -17.58534 -17.17959 -17.11970 -16.68942 -16.45492 -16.29451 -16.01121 -15.89384 -15.53160 -15.29412 -15.06270 -14.85950 -14.68353 -14.09993 -13.84988 -13.82609 -13.50996 -13.33876 -13.26099 -13.17641 -13.10737 -13.02306 -12.96537 -12.72689 -12.64588 -12.47055 -12.34334 -12.23895 -12.04715 -11.95306 -11.75604 -11.63694 -11.42158 -11.35660 -11.17433 -10.87944 -10.10661 -9.90144 -9.36425 -8.39851 -6.46383 -0.73052 1.29292 1.30206 1.41926 1.62713 1.67883 2.26419 2.26838 2.75701 2.91558 2.93222 3.13807 3.63476 3.86159 3.90849 3.97843 3.99050 4.12758 4.15610 4.18903 4.22950 4.37525 4.41472 4.47717 4.48227 4.56164 4.58666 4.69461 4.81710 4.92236 4.94958 4.96026 5.00228 5.01500 5.04481 5.13140 5.19255 5.21747 5.24693 5.34154 5.43694 5.49609 5.78290 5.95386 6.02154 6.13586 6.58685 6.58923 7.17596 7.30449 8.76395 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.003789 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.540992 B = 7388.322901 C = 9454.167911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.109 3.891 3 N -0.717 5.717 4 C 0.465 3.535 5 O -0.582 6.582 6 C 0.035 3.965 7 N -0.474 5.474 8 C 0.050 3.950 9 C -0.138 4.138 10 C 0.122 3.878 11 N -0.986 5.986 12 S 2.616 3.384 13 O -0.985 6.985 14 O -0.984 6.984 15 C -0.590 4.590 16 C -0.012 4.012 17 C -0.529 4.529 18 H 0.038 0.962 19 C 0.013 3.987 20 N -0.941 5.941 21 Si 0.930 3.070 22 H -0.257 1.257 23 H -0.270 1.270 24 H -0.250 1.250 25 C 0.127 3.873 26 C 0.018 3.982 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.418 0.582 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.057 0.943 36 H 0.033 0.967 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.271 0.729 46 H 0.116 0.884 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.328 21.969 -4.280 30.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.372 5.372 4 C 0.252 3.748 5 O -0.462 6.462 6 C -0.097 4.097 7 N -0.195 5.195 8 C -0.079 4.079 9 C -0.178 4.178 10 C -0.004 4.004 11 N -0.824 5.824 12 S 2.712 3.288 13 O -0.976 6.976 14 O -0.974 6.974 15 C -0.720 4.720 16 C -0.051 4.051 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.186 4.186 20 N -0.581 5.581 21 Si 0.752 3.248 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.173 1.173 25 C 0.004 3.996 26 C -0.111 4.111 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.256 0.744 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.113 0.887 48 H 0.107 0.893 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.698 21.929 -4.478 29.164 hybrid contribution -0.498 -2.152 0.367 2.239 sum -19.195 19.776 -4.110 27.865 Atomic orbital electron populations 1.21926 0.91614 1.03897 1.03575 1.21263 0.96407 0.83357 1.00528 1.46108 1.07134 1.09240 1.74725 1.22810 0.82729 0.94073 0.75208 1.90816 1.56138 1.48387 1.50875 1.22865 0.88136 0.90668 1.07985 1.62480 1.05273 1.49207 1.02530 1.22191 0.97710 0.95138 0.92891 1.22831 0.96215 1.01004 0.97742 1.20884 0.99121 0.95079 0.85321 1.57522 1.47123 1.56130 1.21650 1.04635 0.74643 0.75975 0.73581 1.93491 1.82495 1.87297 1.34274 1.93490 1.62716 1.76251 1.64977 1.30420 1.10122 1.18744 1.12716 1.19330 0.93755 0.94216 0.97753 1.21124 0.96716 0.94655 1.44261 0.94328 1.25930 1.03811 0.94619 0.94203 1.70021 1.38216 1.02385 1.47431 0.85956 0.79493 0.78925 0.80455 1.18170 1.19488 1.17319 1.21307 0.87932 1.04848 0.85510 1.21610 0.97033 0.97425 0.95035 0.90831 0.90594 0.90644 0.93498 0.93922 0.74406 0.84641 0.84315 0.92412 0.94834 0.93261 0.87759 0.91256 0.87209 0.85576 0.85998 0.95037 0.94992 0.92022 0.86600 0.88726 0.89332 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.03 71.98 0.72 -0.53 16 2 C 0.11 1.75 6.39 86.38 0.55 2.30 16 3 N -0.72 -9.18 5.56 -463.06 -2.57 -11.76 16 4 C 0.47 8.75 6.91 87.66 0.61 9.35 16 5 O -0.58 -18.03 12.41 -3.02 -0.04 -18.07 16 6 C 0.03 0.38 5.56 85.56 0.48 0.86 16 7 N -0.47 -8.35 4.38 -918.30 -4.02 -12.37 16 8 C 0.05 1.18 4.02 87.43 0.35 1.54 16 9 C -0.14 -3.00 6.63 31.85 0.21 -2.79 16 10 C 0.12 2.77 5.26 87.57 0.46 3.23 16 11 N -0.99 -26.60 2.85 -519.86 -1.48 -28.08 16 12 S 2.62 96.26 5.45 -56.49 -0.31 95.95 16 13 O -0.99 -40.08 16.64 -127.65 -2.12 -42.21 16 14 O -0.98 -40.15 16.56 -127.65 -2.11 -42.26 16 15 C -0.59 -24.82 6.12 71.98 0.44 -24.38 16 16 C -0.01 -0.60 4.05 29.85 0.12 -0.48 16 17 C -0.53 -32.33 9.66 25.60 0.25 -32.08 16 18 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 19 C 0.01 0.78 5.47 84.66 0.46 1.24 16 20 N -0.94 -60.60 13.96 21.45 0.30 -60.30 16 21 Si 0.93 45.96 27.47 68.60 1.88 47.84 16 22 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 25 C 0.13 2.74 6.33 83.74 0.53 3.27 16 26 C 0.02 0.39 3.99 84.52 0.34 0.73 16 27 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.42 1.91 8.47 -92.71 -0.79 1.12 16 33 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.14 0.70 7.93 -2.39 -0.02 0.68 16 35 H 0.06 1.30 7.20 -2.38 -0.02 1.29 16 36 H 0.03 1.08 5.77 -2.39 -0.01 1.07 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.72 6.83 -2.39 -0.02 1.71 16 40 H 0.11 1.88 7.95 -2.39 -0.02 1.86 16 41 H 0.13 5.10 8.14 -2.39 -0.02 5.08 16 42 H 0.12 5.07 8.14 -2.39 -0.02 5.05 16 43 H 0.03 1.60 7.20 -2.38 -0.02 1.58 16 44 H 0.03 1.59 7.57 -2.39 -0.02 1.57 16 45 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.09 2.21 6.95 -2.39 -0.02 2.19 16 48 H 0.09 1.50 7.52 -2.38 -0.02 1.48 16 49 H 0.04 1.09 5.52 -2.39 -0.01 1.07 16 Total: -1.00 -86.40 391.21 -4.85 -91.25 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.10 Total: 17.74 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 5.52 Total: -37.74 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -7.77 Total: -112.51 kcal Atomic # 8 Polarization: -98.26 SS G_CDS: -4.28 Total: -102.54 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal Atomic # 16 Polarization: 96.26 SS G_CDS: -0.31 Total: 95.95 kcal Total: -86.40 -4.85 -91.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.356 kcal (2) G-P(sol) polarization free energy of solvation -86.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds