Wall clock time and date at job start Wed Apr 1 2020 05:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47149 * 2 1 4 4 O 1.42093 * 110.54547 * 291.62539 * 3 2 1 5 5 O 1.42105 * 110.53941 * 68.37879 * 3 2 1 6 6 N 1.65595 * 104.44822 * 179.97438 * 3 2 1 7 7 C 1.47083 * 120.88519 * 269.72650 * 6 3 2 8 8 C 1.53693 * 108.28236 * 128.75463 * 7 6 3 9 9 N 1.46904 * 109.25439 * 54.08060 * 8 7 6 10 10 C 1.46904 * 110.99635 * 172.61026 * 9 8 7 11 11 C 1.52994 * 109.47234 * 294.29967 * 10 9 8 12 12 C 1.50702 * 109.47258 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99774 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99992 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00030 * 0.02562 * 14 12 11 16 16 C 1.46503 * 119.99935 * 180.02562 * 14 12 11 17 17 C 1.50698 * 109.47044 * 89.99772 * 16 14 12 18 18 H 1.08004 * 120.00609 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99764 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99988 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99968 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47266 * 90.00180 * 21 19 17 23 23 H 1.48504 * 109.47335 * 210.00118 * 21 19 17 24 24 H 1.48499 * 109.47336 * 330.00378 * 21 19 17 25 25 C 1.46901 * 111.26825 * 296.75716 * 9 8 7 26 26 C 1.47087 * 120.88365 * 90.00077 * 6 3 2 27 27 H 1.09002 * 109.47153 * 299.99990 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99620 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00010 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00201 * 2 1 3 32 32 H 1.09004 * 109.62867 * 248.52427 * 7 6 3 33 33 H 1.08996 * 109.62608 * 9.09643 * 7 6 3 34 34 H 1.09002 * 109.64303 * 294.08358 * 8 7 6 35 35 H 1.08994 * 109.42472 * 173.94561 * 8 7 6 36 36 H 1.09000 * 109.47270 * 54.30490 * 10 9 8 37 37 H 1.09000 * 109.46794 * 174.29902 * 10 9 8 38 38 H 1.09000 * 109.47418 * 300.00432 * 11 10 9 39 39 H 1.09004 * 109.46859 * 60.00474 * 11 10 9 40 40 H 1.08994 * 109.47013 * 90.00493 * 15 14 12 41 41 H 1.09002 * 109.46965 * 210.00392 * 15 14 12 42 42 H 1.09001 * 109.47425 * 330.00175 * 15 14 12 43 43 H 1.08999 * 109.47337 * 209.99753 * 16 14 12 44 44 H 1.08998 * 109.46573 * 329.99932 * 16 14 12 45 45 H 0.97001 * 119.99923 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.49462 * 303.14785 * 25 9 8 47 47 H 1.09002 * 109.49050 * 183.06744 * 25 9 8 48 48 H 1.09005 * 109.62360 * 350.89978 * 26 6 3 49 49 H 1.08995 * 109.62513 * 111.47377 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.5363 1.5053 1.2633 8 6 5.4642 0.2811 1.2141 9 7 6.2911 0.3484 0.0018 10 6 7.3129 -0.7072 0.0023 11 6 8.3031 -0.4579 1.1417 12 6 9.3509 -1.5410 1.1426 13 8 9.3099 -2.4251 0.3133 14 7 10.3334 -1.5273 2.0650 15 6 10.3826 -0.4598 3.0671 16 6 11.3524 -2.5800 2.0656 17 6 12.5085 -2.1605 1.1947 18 1 12.4868 -1.2051 0.6915 19 6 13.5941 -2.9964 1.0404 20 7 14.6033 -2.6301 0.2808 21 14 13.6321 -4.6484 1.9113 22 1 13.0252 -5.6834 1.0363 23 1 15.0388 -5.0173 2.2120 24 1 12.8624 -4.5580 3.1781 25 6 5.4651 0.2809 -1.2111 26 6 4.5369 1.4990 -1.2613 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.1286 2.4130 1.3801 33 1 3.8427 1.4075 2.0983 34 1 4.8672 -0.6307 1.1970 35 1 6.1079 0.2785 2.0937 36 1 6.8341 -1.6763 0.1426 37 1 7.8443 -0.6988 -0.9493 38 1 8.7819 0.5112 1.0015 39 1 7.7716 -0.4663 2.0933 40 1 9.8113 -0.7596 3.9456 41 1 11.4185 -0.2767 3.3524 42 1 9.9545 0.4512 2.6488 43 1 11.7052 -2.7436 3.0838 44 1 10.9214 -3.5029 1.6776 45 1 15.3669 -3.2183 0.1720 46 1 4.8681 -0.6309 -1.1943 47 1 6.1095 0.2781 -2.0903 48 1 3.8435 1.3968 -2.0961 49 1 5.1291 2.4060 -1.3824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131363941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:41 Heat of formation + Delta-G solvation = -88.878407 kcal Electronic energy + Delta-G solvation = -29148.807065 eV Core-core repulsion = 25045.717085 eV Total energy + Delta-G solvation = -4103.089980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.63615 -38.80559 -37.56638 -36.36350 -35.39303 -34.85198 -33.65941 -32.60222 -31.64594 -30.93935 -28.52214 -26.69413 -25.79356 -24.59038 -24.18844 -23.20995 -21.55462 -20.77788 -19.19165 -18.44197 -18.23080 -16.99019 -16.89392 -16.71149 -16.54465 -15.76884 -15.48764 -15.28183 -15.12398 -14.89416 -14.73996 -14.59418 -14.27279 -14.03465 -13.74354 -13.24792 -13.06539 -13.01077 -12.79148 -12.57256 -12.50733 -12.33159 -12.27970 -12.16178 -12.12311 -12.08365 -11.99492 -11.65308 -11.60489 -11.38136 -11.28816 -10.96679 -10.94897 -10.73679 -10.53378 -10.16921 -9.56620 -9.50329 -9.05267 -8.61028 -8.53309 -7.73519 -6.10616 -4.09434 -0.20722 2.16891 3.26908 3.30147 3.33005 3.34408 3.39908 3.46815 3.65218 3.97383 4.01687 4.22997 4.24919 4.37435 4.63065 4.64689 4.74162 4.83990 4.90836 5.02261 5.02742 5.07466 5.13428 5.16120 5.21407 5.26978 5.33318 5.37780 5.39738 5.54951 5.56970 5.64691 5.70659 5.72819 5.82288 6.00341 6.01957 6.10932 6.16060 6.66724 6.81407 6.81809 6.91783 7.30282 7.58855 8.21619 8.44891 8.90140 8.95777 9.49504 11.02735 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.001926 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.180799 B =14532.001434 C =14550.291060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.608 3.392 4 O -0.953 6.953 5 O -0.953 6.953 6 N -1.002 6.002 7 C 0.127 3.873 8 C 0.034 3.966 9 N -0.536 5.536 10 C 0.073 3.927 11 C -0.135 4.135 12 C 0.507 3.493 13 O -0.545 6.545 14 N -0.599 5.599 15 C 0.083 3.917 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.041 3.959 26 C 0.127 3.873 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.265 0.735 46 H 0.038 0.962 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.150 7.817 2.500 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.701 3.299 4 O -0.943 6.943 5 O -0.944 6.944 6 N -0.840 5.840 7 C 0.001 3.999 8 C -0.096 4.096 9 N -0.261 5.261 10 C -0.055 4.055 11 C -0.175 4.175 12 C 0.293 3.707 13 O -0.423 6.423 14 N -0.330 5.330 15 C -0.061 4.061 16 C 0.094 3.906 17 C -0.567 4.567 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.089 4.089 26 C 0.001 3.999 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.217 8.543 2.008 28.597 hybrid contribution 0.139 -2.420 0.458 2.467 sum -27.078 6.123 2.466 27.871 Atomic orbital electron populations 1.21504 0.90482 1.05143 1.03445 1.30589 1.07227 1.26883 1.11609 1.05198 0.72912 0.77475 0.74324 1.93598 1.83152 1.72393 1.45203 1.93598 1.83162 1.72414 1.45187 1.57824 1.23870 1.89686 1.12629 1.21658 0.94652 0.99340 0.84218 1.22682 0.95634 0.96818 0.94448 1.61834 1.14332 1.48316 1.01638 1.21825 0.92018 0.91680 0.99963 1.21647 0.96354 0.99702 0.99826 1.20324 0.82400 0.86660 0.81297 1.90667 1.75756 1.38350 1.37558 1.47849 1.27349 1.27518 1.30314 1.21671 1.03088 0.90112 0.91214 1.19658 0.86699 0.87030 0.97177 1.21324 1.00557 1.05859 1.28949 0.90761 1.24875 0.95327 0.97999 0.94930 1.69898 1.07831 1.37370 1.38443 0.86836 0.77382 0.84790 0.80561 1.19951 1.21058 1.19116 1.22494 0.95649 0.96815 0.93952 1.21569 0.94652 0.99431 0.84221 0.90939 0.90943 0.89974 0.85131 0.85139 0.89745 0.88985 0.94397 0.88990 0.93944 0.89488 0.88323 0.89729 0.93731 0.90602 0.91912 0.95292 0.94640 0.92556 0.94424 0.89009 0.88962 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.92 37.16 0.37 -0.34 16 2 C -0.63 -3.18 6.90 37.16 0.26 -2.92 16 3 S 2.61 21.00 5.42 -107.50 -0.58 20.42 16 4 O -0.95 -10.42 16.79 -57.54 -0.97 -11.39 16 5 O -0.95 -10.36 16.78 -57.54 -0.97 -11.33 16 6 N -1.00 -7.64 3.25 -112.97 -0.37 -8.01 16 7 C 0.13 0.92 6.49 -3.36 -0.02 0.89 16 8 C 0.03 0.26 5.48 -3.46 -0.02 0.24 16 9 N -0.54 -5.16 4.63 -234.03 -1.08 -6.24 16 10 C 0.07 0.90 4.25 -3.83 -0.02 0.88 16 11 C -0.13 -1.76 4.18 -27.89 -0.12 -1.88 16 12 C 0.51 9.75 7.67 -10.98 -0.08 9.66 16 13 O -0.55 -12.85 15.56 5.56 0.09 -12.76 16 14 N -0.60 -11.92 2.86 -182.96 -0.52 -12.44 16 15 C 0.08 1.21 10.24 59.85 0.61 1.82 16 16 C 0.22 5.19 4.23 -5.19 -0.02 5.17 16 17 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 18 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 21 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 25 C 0.04 0.33 5.62 -3.70 -0.02 0.31 16 26 C 0.13 0.94 6.46 -3.60 -0.02 0.92 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.56 7.18 -51.93 -0.37 0.18 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.66 6.16 -51.93 -0.32 0.34 16 36 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 38 H 0.10 1.22 7.40 -51.93 -0.38 0.84 16 39 H 0.08 0.89 6.37 -51.93 -0.33 0.56 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 42 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 43 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.72 7.99 -51.93 -0.41 0.30 16 48 H 0.09 0.57 7.19 -51.93 -0.37 0.20 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -38.19 398.91 -10.14 -48.32 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.32 Total: -3.88 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 0.47 Total: 1.30 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -1.20 Total: -53.45 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.85 Total: -35.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 21.00 SS G_CDS: -0.58 Total: 20.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.19 -10.14 -48.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131363941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.557 kcal (2) G-P(sol) polarization free energy of solvation -38.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds