Wall clock time and date at job start Wed Apr 1 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47149 * 2 1 4 4 O 1.42093 * 110.54547 * 291.62539 * 3 2 1 5 5 O 1.42105 * 110.53941 * 68.37879 * 3 2 1 6 6 N 1.65595 * 104.44822 * 179.97438 * 3 2 1 7 7 C 1.47083 * 120.88519 * 269.72650 * 6 3 2 8 8 C 1.53693 * 108.28236 * 128.75463 * 7 6 3 9 9 N 1.46904 * 109.25439 * 54.08060 * 8 7 6 10 10 C 1.46904 * 110.99635 * 172.61026 * 9 8 7 11 11 C 1.52994 * 109.47234 * 294.29967 * 10 9 8 12 12 C 1.50702 * 109.47258 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99774 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99992 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00030 * 0.02562 * 14 12 11 16 16 C 1.46503 * 119.99935 * 180.02562 * 14 12 11 17 17 C 1.50698 * 109.47044 * 89.99772 * 16 14 12 18 18 H 1.08004 * 120.00609 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99764 * 180.02562 * 17 16 14 20 20 N 1.31515 * 119.99988 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99968 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47266 * 90.00180 * 21 19 17 23 23 H 1.48504 * 109.47335 * 210.00118 * 21 19 17 24 24 H 1.48499 * 109.47336 * 330.00378 * 21 19 17 25 25 C 1.46901 * 111.26825 * 296.75716 * 9 8 7 26 26 C 1.47087 * 120.88365 * 90.00077 * 6 3 2 27 27 H 1.09002 * 109.47153 * 299.99990 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99620 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00010 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00201 * 2 1 3 32 32 H 1.09004 * 109.62867 * 248.52427 * 7 6 3 33 33 H 1.08996 * 109.62608 * 9.09643 * 7 6 3 34 34 H 1.09002 * 109.64303 * 294.08358 * 8 7 6 35 35 H 1.08994 * 109.42472 * 173.94561 * 8 7 6 36 36 H 1.09000 * 109.47270 * 54.30490 * 10 9 8 37 37 H 1.09000 * 109.46794 * 174.29902 * 10 9 8 38 38 H 1.09000 * 109.47418 * 300.00432 * 11 10 9 39 39 H 1.09004 * 109.46859 * 60.00474 * 11 10 9 40 40 H 1.08994 * 109.47013 * 90.00493 * 15 14 12 41 41 H 1.09002 * 109.46965 * 210.00392 * 15 14 12 42 42 H 1.09001 * 109.47425 * 330.00175 * 15 14 12 43 43 H 1.08999 * 109.47337 * 209.99753 * 16 14 12 44 44 H 1.08998 * 109.46573 * 329.99932 * 16 14 12 45 45 H 0.97001 * 119.99923 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.49462 * 303.14785 * 25 9 8 47 47 H 1.09002 * 109.49050 * 183.06744 * 25 9 8 48 48 H 1.09005 * 109.62360 * 350.89978 * 26 6 3 49 49 H 1.08995 * 109.62513 * 111.47377 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.5363 1.5053 1.2633 8 6 5.4642 0.2811 1.2141 9 7 6.2911 0.3484 0.0018 10 6 7.3129 -0.7072 0.0023 11 6 8.3031 -0.4579 1.1417 12 6 9.3509 -1.5410 1.1426 13 8 9.3099 -2.4251 0.3133 14 7 10.3334 -1.5273 2.0650 15 6 10.3826 -0.4598 3.0671 16 6 11.3524 -2.5800 2.0656 17 6 12.5085 -2.1605 1.1947 18 1 12.4868 -1.2051 0.6915 19 6 13.5941 -2.9964 1.0404 20 7 14.6033 -2.6301 0.2808 21 14 13.6321 -4.6484 1.9113 22 1 13.0252 -5.6834 1.0363 23 1 15.0388 -5.0173 2.2120 24 1 12.8624 -4.5580 3.1781 25 6 5.4651 0.2809 -1.2111 26 6 4.5369 1.4990 -1.2613 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.1286 2.4130 1.3801 33 1 3.8427 1.4075 2.0983 34 1 4.8672 -0.6307 1.1970 35 1 6.1079 0.2785 2.0937 36 1 6.8341 -1.6763 0.1426 37 1 7.8443 -0.6988 -0.9493 38 1 8.7819 0.5112 1.0015 39 1 7.7716 -0.4663 2.0933 40 1 9.8113 -0.7596 3.9456 41 1 11.4185 -0.2767 3.3524 42 1 9.9545 0.4512 2.6488 43 1 11.7052 -2.7436 3.0838 44 1 10.9214 -3.5029 1.6776 45 1 15.3669 -3.2183 0.1720 46 1 4.8681 -0.6309 -1.1943 47 1 6.1095 0.2781 -2.0903 48 1 3.8435 1.3968 -2.0961 49 1 5.1291 2.4060 -1.3824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131363941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:39 Heat of formation + Delta-G solvation = -119.739111 kcal Electronic energy + Delta-G solvation = -29150.145286 eV Core-core repulsion = 25045.717085 eV Total energy + Delta-G solvation = -4104.428201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.83249 -39.80168 -38.28029 -37.08122 -36.68625 -35.98257 -34.69266 -34.04840 -32.44050 -31.91021 -30.23132 -27.63676 -27.11666 -25.07418 -24.82057 -24.64816 -22.86369 -21.45958 -19.90258 -19.78657 -19.14279 -18.89637 -17.89559 -17.43650 -17.33807 -17.08480 -16.81501 -16.27033 -15.90450 -15.77880 -15.62703 -15.47218 -15.18593 -15.13372 -14.65215 -14.26968 -14.15585 -14.07592 -13.70060 -13.61197 -13.44476 -13.43921 -13.32519 -13.27857 -13.23037 -12.92984 -12.85720 -12.72439 -12.45737 -12.43063 -12.30525 -12.23930 -12.00001 -11.93024 -11.74422 -11.68899 -11.42913 -10.83103 -10.63526 -10.09723 -9.36674 -9.25992 -8.33703 -6.38762 -0.79130 1.32907 1.36787 1.45434 1.58636 1.83275 2.30091 2.31466 2.83870 2.93200 3.00732 3.08423 3.53548 3.74624 3.83093 3.85149 3.91249 4.09542 4.13790 4.29632 4.33429 4.33954 4.37058 4.44395 4.50509 4.59737 4.67026 4.69607 4.76353 4.81845 4.82563 4.86112 4.94822 4.97308 4.97710 5.02172 5.05327 5.06426 5.13648 5.17639 5.46677 5.53076 5.63940 6.02113 6.12275 6.24353 6.62796 6.73643 7.22075 7.45157 8.83214 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.001926 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.180799 B =14532.001434 C =14550.291060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.613 4.613 3 S 2.610 3.390 4 O -0.989 6.989 5 O -0.987 6.987 6 N -1.004 6.004 7 C 0.126 3.874 8 C 0.031 3.969 9 N -0.540 5.540 10 C 0.082 3.918 11 C -0.118 4.118 12 C 0.496 3.504 13 O -0.599 6.599 14 N -0.609 5.609 15 C 0.077 3.923 16 C 0.222 3.778 17 C -0.535 4.535 18 H 0.027 0.973 19 C 0.007 3.993 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.277 1.277 23 H -0.276 1.276 24 H -0.237 1.237 25 C 0.039 3.961 26 C 0.128 3.872 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.018 0.982 45 H 0.268 0.732 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.132 6.982 4.712 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.746 4.746 3 S 2.707 3.293 4 O -0.980 6.980 5 O -0.977 6.977 6 N -0.842 5.842 7 C 0.000 4.000 8 C -0.098 4.098 9 N -0.265 5.265 10 C -0.046 4.046 11 C -0.157 4.157 12 C 0.285 3.715 13 O -0.481 6.481 14 N -0.340 5.340 15 C -0.065 4.065 16 C 0.100 3.900 17 C -0.574 4.574 18 H 0.046 0.954 19 C -0.191 4.191 20 N -0.586 5.586 21 Si 0.773 3.227 22 H -0.202 1.202 23 H -0.201 1.201 24 H -0.160 1.160 25 C -0.090 4.090 26 C 0.003 3.997 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.121 0.879 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -29.214 7.800 4.260 30.535 hybrid contribution 0.713 -2.095 -0.292 2.232 sum -28.501 5.705 3.967 29.335 Atomic orbital electron populations 1.21682 0.90232 1.06340 1.03686 1.30398 1.07356 1.23248 1.13564 1.04949 0.72749 0.78674 0.72882 1.93548 1.83657 1.74444 1.46337 1.93550 1.83623 1.74393 1.46161 1.57723 1.23706 1.89950 1.12810 1.21728 0.94811 0.98987 0.84435 1.22795 0.95769 0.97404 0.93796 1.61810 1.14758 1.46882 1.03007 1.21596 0.92429 0.92128 0.98448 1.21590 0.94802 0.97328 1.02016 1.21421 0.82992 0.87188 0.79914 1.90633 1.77178 1.40783 1.39498 1.47996 1.26419 1.27867 1.31754 1.21983 1.03318 0.89832 0.91386 1.19321 0.86135 0.87785 0.96792 1.21574 1.02458 1.04132 1.29220 0.95421 1.25902 0.94759 1.02574 0.95817 1.70057 1.08821 1.39289 1.40429 0.85681 0.78114 0.78667 0.80256 1.20232 1.20097 1.16005 1.22545 0.95619 0.97528 0.93347 1.21563 0.94687 0.98801 0.84650 0.90791 0.90931 0.88202 0.83347 0.83129 0.90134 0.87616 0.93446 0.87837 0.94913 0.91997 0.87137 0.85985 0.90017 0.91938 0.89007 0.93247 0.96389 0.92309 0.93448 0.89280 0.87872 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.92 71.98 0.71 -0.46 16 2 C -0.61 -4.40 6.90 71.98 0.50 -3.91 16 3 S 2.61 38.71 5.42 -56.49 -0.31 38.41 16 4 O -0.99 -21.20 16.79 -127.65 -2.14 -23.35 16 5 O -0.99 -20.58 16.78 -127.65 -2.14 -22.72 16 6 N -1.00 -13.64 3.25 -511.33 -1.66 -15.30 16 7 C 0.13 1.53 6.49 86.50 0.56 2.09 16 8 C 0.03 0.40 5.48 86.54 0.47 0.87 16 9 N -0.54 -9.35 4.63 -894.33 -4.14 -13.49 16 10 C 0.08 1.94 4.25 86.30 0.37 2.30 16 11 C -0.12 -2.81 4.18 29.85 0.12 -2.69 16 12 C 0.50 18.77 7.67 87.66 0.67 19.44 16 13 O -0.60 -28.83 15.56 -3.04 -0.05 -28.88 16 14 N -0.61 -23.59 2.86 -851.14 -2.43 -26.02 16 15 C 0.08 2.01 10.24 127.77 1.31 3.32 16 16 C 0.22 10.64 4.23 85.63 0.36 11.00 16 17 C -0.54 -31.35 9.94 25.60 0.25 -31.10 16 18 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 19 C 0.01 0.43 5.47 84.66 0.46 0.89 16 20 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 21 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 25 C 0.04 0.58 5.62 86.38 0.49 1.06 16 26 C 0.13 1.75 6.46 86.34 0.56 2.31 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.03 16 33 H 0.11 1.01 7.18 -2.39 -0.02 0.99 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.10 1.06 6.16 -2.39 -0.01 1.04 16 36 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.06 1.76 7.93 -2.39 -0.02 1.74 16 38 H 0.11 2.45 7.40 -2.39 -0.02 2.43 16 39 H 0.12 2.03 6.37 -2.39 -0.02 2.02 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 42 H 0.09 1.86 6.44 -2.39 -0.02 1.85 16 43 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 44 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 45 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.09 1.36 7.99 -2.39 -0.02 1.34 16 48 H 0.10 1.17 7.19 -2.38 -0.02 1.16 16 49 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -87.30 398.91 -2.98 -90.28 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.87 Total: 9.40 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.84 Total: 5.14 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -7.94 Total: -114.31 kcal Atomic # 8 Polarization: -70.61 SS G_CDS: -4.33 Total: -74.94 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Atomic # 16 Polarization: 38.71 SS G_CDS: -0.31 Total: 38.41 kcal Total: -87.30 -2.98 -90.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131363941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.456 kcal (2) G-P(sol) polarization free energy of solvation -87.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds