Wall clock time and date at job start Wed Apr 1 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47408 * 2 1 4 4 C 1.46503 * 120.00489 * 270.00256 * 3 2 1 5 5 C 1.50694 * 109.46902 * 270.00197 * 4 3 2 6 6 H 1.07998 * 120.00539 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99611 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46969 * 59.99886 * 9 7 5 11 11 H 1.48504 * 109.46758 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47217 * 299.99775 * 9 7 5 13 13 C 1.34779 * 119.99840 * 90.00031 * 3 2 1 14 14 O 1.21274 * 120.00493 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99500 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.46741 * 180.02562 * 15 13 3 17 17 C 1.46896 * 111.00135 * 66.04469 * 16 15 13 18 18 C 1.53247 * 109.33802 * 187.25520 * 17 16 15 19 19 N 1.47082 * 108.51730 * 306.16845 * 18 17 16 20 20 S 1.65598 * 120.87848 * 231.20312 * 19 18 17 21 21 C 1.81399 * 104.45163 * 256.67150 * 20 19 18 22 22 O 1.42102 * 104.27717 * 12.74895 * 20 19 18 23 23 O 1.42100 * 104.27313 * 140.60152 * 20 19 18 24 24 C 1.47075 * 118.23775 * 51.19301 * 19 18 17 25 25 H 1.08997 * 109.63256 * 68.51703 * 24 19 18 26 26 C 1.52998 * 109.62874 * 188.90791 * 24 19 18 27 27 C 1.46899 * 110.99891 * 190.34817 * 16 15 13 28 28 H 1.08995 * 109.47086 * 300.00083 * 1 2 3 29 29 H 1.09003 * 109.46732 * 59.99745 * 1 2 3 30 30 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46977 * 240.00159 * 2 1 3 32 32 H 1.08995 * 109.46924 * 120.00565 * 2 1 3 33 33 H 1.08998 * 109.46765 * 29.99767 * 4 3 2 34 34 H 1.08998 * 109.46980 * 149.99735 * 4 3 2 35 35 H 0.97010 * 119.99535 * 180.02562 * 8 7 5 36 36 H 1.08991 * 109.47427 * 60.00405 * 15 13 3 37 37 H 1.09000 * 109.47074 * 299.99487 * 15 13 3 38 38 H 1.09002 * 109.49342 * 67.29739 * 17 16 15 39 39 H 1.08996 * 109.51419 * 307.22496 * 17 16 15 40 40 H 1.08994 * 109.62378 * 186.46068 * 18 17 16 41 41 H 1.08991 * 109.79004 * 65.97574 * 18 17 16 42 42 H 1.09007 * 109.46675 * 60.00601 * 21 20 19 43 43 H 1.08997 * 109.47000 * 180.02562 * 21 20 19 44 44 H 1.09000 * 109.47231 * 300.00490 * 21 20 19 45 45 H 1.09000 * 109.47258 * 68.12607 * 26 24 19 46 46 H 1.09004 * 109.47626 * 188.13055 * 26 24 19 47 47 H 1.09004 * 109.46716 * 308.12833 * 26 24 19 48 48 H 1.09007 * 109.49212 * 52.78259 * 27 16 15 49 49 H 1.08998 * 109.49518 * 292.70700 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3906 -2.8774 8 7 3.3495 3.1268 -3.6173 9 14 5.9139 2.0975 -3.4163 10 1 6.1416 0.6409 -3.5943 11 1 6.1613 2.7976 -4.7024 12 1 6.8410 2.6206 -2.3811 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1674 15 6 1.9924 1.3057 2.4723 16 7 2.3099 2.2060 3.5890 17 6 1.3826 3.3446 3.6273 18 6 1.8542 4.3476 4.6857 19 7 2.0191 3.6365 5.9625 20 16 1.3160 4.2060 7.3495 21 6 2.6807 4.9713 8.2674 22 8 0.4017 5.1957 6.8980 23 8 0.8600 3.0372 8.0166 24 6 2.8247 2.4061 5.9748 25 1 3.8712 2.6517 5.7945 26 6 2.6856 1.7142 7.3323 27 6 2.3149 1.4795 4.8657 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5818 1.6878 -2.0283 34 1 2.0957 3.1411 -1.1382 35 1 3.6756 3.5173 -4.4433 36 1 2.6229 0.4186 2.5298 37 1 0.9445 1.0113 2.5302 38 1 0.3831 2.9913 3.8808 39 1 1.3606 3.8292 2.6513 40 1 1.1107 5.1365 4.7992 41 1 2.8066 4.7828 4.3832 42 1 3.1140 5.7746 7.6714 43 1 2.3043 5.3775 9.2063 44 1 3.4437 4.2215 8.4762 45 1 1.6698 1.3354 7.4447 46 1 3.3911 0.8854 7.3918 47 1 2.8969 2.4290 8.1277 48 1 2.9694 0.6113 4.7877 49 1 1.3025 1.1521 5.1019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181592799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:06 Heat of formation + Delta-G solvation = -72.347137 kcal Electronic energy + Delta-G solvation = -30304.805516 eV Core-core repulsion = 26202.432386 eV Total energy + Delta-G solvation = -4102.373130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.75858 -38.51076 -37.53649 -36.18541 -35.40760 -34.66649 -32.77640 -32.53429 -30.10748 -29.87961 -28.96257 -27.60023 -26.61605 -24.39051 -23.02743 -22.94076 -22.03472 -20.81970 -18.99188 -18.29742 -17.40894 -16.89597 -16.58161 -16.43911 -16.26592 -15.70037 -15.31589 -15.15299 -14.75513 -14.57095 -14.48337 -14.12876 -13.77983 -13.62685 -13.53499 -13.35607 -13.16277 -12.96581 -12.69498 -12.47601 -12.38620 -12.28990 -11.99281 -11.88615 -11.78441 -11.56885 -11.53599 -11.27939 -11.18526 -11.14524 -10.98771 -10.91200 -10.71148 -10.56840 -10.47071 -10.11000 -9.62103 -9.32988 -8.79356 -8.41699 -8.16851 -7.62437 -6.02704 -4.07180 -0.01113 2.34791 3.32715 3.37208 3.38520 3.46301 3.56128 3.63578 3.87753 4.16502 4.23771 4.45017 4.46873 4.58896 4.69753 4.89317 5.04014 5.15480 5.18695 5.24379 5.26439 5.31589 5.33567 5.38959 5.44339 5.52736 5.55264 5.59351 5.65337 5.74015 5.77773 5.81056 6.01555 6.04440 6.07911 6.19363 6.22995 6.44284 6.47051 6.92927 7.09966 7.16247 7.46398 7.57760 7.94109 8.25689 8.45538 8.92651 9.14472 9.57919 11.05296 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002601 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.818327 B =10764.248972 C =11240.400715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.037 3.963 16 N -0.518 5.518 17 C 0.042 3.958 18 C 0.124 3.876 19 N -0.998 5.998 20 S 2.608 3.392 21 C -0.676 4.676 22 O -0.959 6.959 23 O -0.954 6.954 24 C 0.157 3.843 25 H 0.085 0.915 26 C -0.180 4.180 27 C 0.051 3.949 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.031 0.969 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -3.426 22.816 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.130 3.870 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.243 5.243 17 C -0.087 4.087 18 C -0.001 4.001 19 N -0.837 5.837 20 S 2.703 3.297 21 C -0.826 4.826 22 O -0.950 6.950 23 O -0.944 6.944 24 C 0.051 3.949 25 H 0.103 0.897 26 C -0.239 4.239 27 C -0.079 4.079 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.754 -2.551 22.785 23.233 hybrid contribution 0.980 -0.394 -0.226 1.080 sum -2.774 -2.945 22.559 22.919 Atomic orbital electron populations 1.22221 0.96898 1.01364 1.02240 1.21396 0.93396 0.84368 1.02583 1.48273 1.63988 1.13227 1.07726 1.19231 0.96165 0.93576 0.78075 1.21400 0.96943 1.31846 1.06196 0.92546 1.24930 0.97791 0.94949 0.96423 1.69925 1.35715 1.33458 1.14379 0.86567 0.84904 0.78192 0.77788 1.20314 1.21242 1.20175 1.20109 0.78808 0.87156 0.84687 1.90629 1.44773 1.17845 1.86762 1.22074 1.00456 0.96082 0.90744 1.61470 1.52227 1.08937 1.01619 1.22582 0.92442 0.92345 1.01321 1.21619 1.02877 0.94409 0.81146 1.57836 1.68401 1.34849 1.22628 1.04930 0.75905 0.74644 0.74257 1.30658 1.21766 1.14720 1.15427 1.93579 1.59557 1.62336 1.79506 1.93662 1.79517 1.45545 1.75716 1.21092 0.95380 0.83153 0.95248 0.89728 1.22662 1.05702 1.01624 0.93904 1.22466 1.00404 0.96062 0.88976 0.93257 0.92009 0.92216 0.89951 0.91920 0.95158 0.93947 0.92706 0.88421 0.92575 0.95099 0.87150 0.88217 0.90172 0.85238 0.85682 0.85363 0.88263 0.90786 0.92766 0.89624 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.24 2.46 -175.06 -0.43 -12.67 16 4 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 5 C -0.52 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.11 7.33 -10.98 -0.08 10.03 16 14 O -0.52 -12.56 13.94 5.56 0.08 -12.48 16 15 C 0.04 0.54 4.00 -4.97 -0.02 0.52 16 16 N -0.52 -7.28 4.36 -235.75 -1.03 -8.31 16 17 C 0.04 0.60 5.26 -3.70 -0.02 0.58 16 18 C 0.12 1.49 6.66 -3.60 -0.02 1.46 16 19 N -1.00 -10.13 3.25 -106.20 -0.34 -10.47 16 20 S 2.61 24.48 5.49 -107.50 -0.59 23.89 16 21 C -0.68 -3.77 10.73 101.05 1.08 -2.68 16 22 O -0.96 -12.31 16.32 -57.54 -0.94 -13.25 16 23 O -0.95 -10.81 13.64 -57.54 -0.78 -11.59 16 24 C 0.16 1.47 3.66 -67.49 -0.25 1.23 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 C -0.18 -1.41 7.62 37.16 0.28 -1.12 16 27 C 0.05 0.54 4.92 -3.70 -0.02 0.52 16 28 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.10 1.25 7.22 -51.93 -0.38 0.87 16 37 H 0.06 0.72 7.17 -51.93 -0.37 0.35 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.11 1.87 5.80 -51.93 -0.30 1.57 16 40 H 0.10 1.15 6.62 -51.93 -0.34 0.80 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.13 0.54 6.67 -51.92 -0.35 0.20 16 45 H 0.10 0.95 6.47 -51.93 -0.34 0.61 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.35 4.83 -51.93 -0.25 0.10 16 48 H 0.09 0.78 7.99 -51.93 -0.41 0.36 16 49 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -36.26 389.35 -9.61 -45.87 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.02 Total: -1.11 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 0.87 Total: 3.27 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -1.07 Total: -57.22 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.65 Total: -37.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 24.48 SS G_CDS: -0.59 Total: 23.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.26 -9.61 -45.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181592799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.476 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds