Wall clock time and date at job start Wed Apr 1 2020 04:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47408 * 2 1 4 4 C 1.46503 * 120.00489 * 270.00256 * 3 2 1 5 5 C 1.50694 * 109.46902 * 270.00197 * 4 3 2 6 6 H 1.07998 * 120.00539 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99859 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99611 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46969 * 59.99886 * 9 7 5 11 11 H 1.48504 * 109.46758 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47217 * 299.99775 * 9 7 5 13 13 C 1.34779 * 119.99840 * 90.00031 * 3 2 1 14 14 O 1.21274 * 120.00493 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99500 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.46741 * 180.02562 * 15 13 3 17 17 C 1.46896 * 111.00135 * 66.04469 * 16 15 13 18 18 C 1.53247 * 109.33802 * 187.25520 * 17 16 15 19 19 N 1.47082 * 108.51730 * 306.16845 * 18 17 16 20 20 S 1.65598 * 120.87848 * 231.20312 * 19 18 17 21 21 C 1.81399 * 104.45163 * 256.67150 * 20 19 18 22 22 O 1.42102 * 104.27717 * 12.74895 * 20 19 18 23 23 O 1.42100 * 104.27313 * 140.60152 * 20 19 18 24 24 C 1.47075 * 118.23775 * 51.19301 * 19 18 17 25 25 H 1.08997 * 109.63256 * 68.51703 * 24 19 18 26 26 C 1.52998 * 109.62874 * 188.90791 * 24 19 18 27 27 C 1.46899 * 110.99891 * 190.34817 * 16 15 13 28 28 H 1.08995 * 109.47086 * 300.00083 * 1 2 3 29 29 H 1.09003 * 109.46732 * 59.99745 * 1 2 3 30 30 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46977 * 240.00159 * 2 1 3 32 32 H 1.08995 * 109.46924 * 120.00565 * 2 1 3 33 33 H 1.08998 * 109.46765 * 29.99767 * 4 3 2 34 34 H 1.08998 * 109.46980 * 149.99735 * 4 3 2 35 35 H 0.97010 * 119.99535 * 180.02562 * 8 7 5 36 36 H 1.08991 * 109.47427 * 60.00405 * 15 13 3 37 37 H 1.09000 * 109.47074 * 299.99487 * 15 13 3 38 38 H 1.09002 * 109.49342 * 67.29739 * 17 16 15 39 39 H 1.08996 * 109.51419 * 307.22496 * 17 16 15 40 40 H 1.08994 * 109.62378 * 186.46068 * 18 17 16 41 41 H 1.08991 * 109.79004 * 65.97574 * 18 17 16 42 42 H 1.09007 * 109.46675 * 60.00601 * 21 20 19 43 43 H 1.08997 * 109.47000 * 180.02562 * 21 20 19 44 44 H 1.09000 * 109.47231 * 300.00490 * 21 20 19 45 45 H 1.09000 * 109.47258 * 68.12607 * 26 24 19 46 46 H 1.09004 * 109.47626 * 188.13055 * 26 24 19 47 47 H 1.09004 * 109.46716 * 308.12833 * 26 24 19 48 48 H 1.09007 * 109.49212 * 52.78259 * 27 16 15 49 49 H 1.08998 * 109.49518 * 292.70700 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3906 -2.8774 8 7 3.3495 3.1268 -3.6173 9 14 5.9139 2.0975 -3.4163 10 1 6.1416 0.6409 -3.5943 11 1 6.1613 2.7976 -4.7024 12 1 6.8410 2.6206 -2.3811 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1600 1.1674 15 6 1.9924 1.3057 2.4723 16 7 2.3099 2.2060 3.5890 17 6 1.3826 3.3446 3.6273 18 6 1.8542 4.3476 4.6857 19 7 2.0191 3.6365 5.9625 20 16 1.3160 4.2060 7.3495 21 6 2.6807 4.9713 8.2674 22 8 0.4017 5.1957 6.8980 23 8 0.8600 3.0372 8.0166 24 6 2.8247 2.4061 5.9748 25 1 3.8712 2.6517 5.7945 26 6 2.6856 1.7142 7.3323 27 6 2.3149 1.4795 4.8657 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5818 1.6878 -2.0283 34 1 2.0957 3.1411 -1.1382 35 1 3.6756 3.5173 -4.4433 36 1 2.6229 0.4186 2.5298 37 1 0.9445 1.0113 2.5302 38 1 0.3831 2.9913 3.8808 39 1 1.3606 3.8292 2.6513 40 1 1.1107 5.1365 4.7992 41 1 2.8066 4.7828 4.3832 42 1 3.1140 5.7746 7.6714 43 1 2.3043 5.3775 9.2063 44 1 3.4437 4.2215 8.4762 45 1 1.6698 1.3354 7.4447 46 1 3.3911 0.8854 7.3918 47 1 2.8969 2.4290 8.1277 48 1 2.9694 0.6113 4.7877 49 1 1.3025 1.1521 5.1019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181592799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:05 Heat of formation + Delta-G solvation = -100.757841 kcal Electronic energy + Delta-G solvation = -30306.037497 eV Core-core repulsion = 26202.432386 eV Total energy + Delta-G solvation = -4103.605111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.04240 -39.68673 -38.37411 -37.04671 -36.89328 -35.77032 -34.84690 -33.36690 -31.62740 -30.49101 -30.15898 -28.75327 -28.00064 -25.65841 -24.57575 -24.05859 -23.27201 -21.75097 -19.82636 -19.76348 -18.59453 -18.26605 -17.91946 -17.43484 -17.28506 -17.18992 -16.47137 -16.32954 -16.07361 -15.75875 -15.60713 -15.28846 -15.00089 -14.64370 -14.34509 -14.27962 -14.15252 -14.02534 -13.89513 -13.56800 -13.38178 -13.26631 -13.23882 -13.17758 -13.07499 -12.89075 -12.69868 -12.57836 -12.48658 -12.34008 -12.18704 -12.11794 -11.98935 -11.86924 -11.79912 -11.68532 -11.31849 -10.61784 -10.51432 -10.00382 -9.39665 -9.20849 -8.19544 -6.34289 -0.70121 1.38048 1.42492 1.49670 1.60704 1.91328 2.25127 2.43052 2.90013 2.98825 3.09897 3.20239 3.49649 3.70739 3.92609 4.03791 4.05208 4.11595 4.15590 4.23073 4.27679 4.38126 4.41091 4.46653 4.47968 4.63698 4.67867 4.72959 4.75796 4.87413 4.90266 4.93971 4.99112 5.00127 5.07012 5.09097 5.17761 5.24987 5.38367 5.56810 5.61156 5.62489 5.87783 5.96120 6.10099 6.12537 6.74176 6.87692 7.32182 7.58247 8.87143 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002601 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.818327 B =10764.248972 C =11240.400715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.496 3.504 14 O -0.575 6.575 15 C 0.052 3.948 16 N -0.534 5.534 17 C 0.044 3.956 18 C 0.131 3.869 19 N -1.000 6.000 20 S 2.607 3.393 21 C -0.654 4.654 22 O -1.002 7.002 23 O -0.977 6.977 24 C 0.155 3.845 25 H 0.094 0.906 26 C -0.177 4.177 27 C 0.048 3.952 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.018 0.982 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.108 0.892 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -5.478 25.375 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.202 1.202 13 C 0.285 3.715 14 O -0.455 6.455 15 C -0.079 4.079 16 N -0.259 5.259 17 C -0.086 4.086 18 C 0.005 3.995 19 N -0.838 5.838 20 S 2.707 3.293 21 C -0.807 4.807 22 O -0.993 6.993 23 O -0.968 6.968 24 C 0.049 3.951 25 H 0.112 0.888 26 C -0.236 4.236 27 C -0.081 4.081 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.036 0.964 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.127 0.873 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.111 -4.681 25.349 25.864 hybrid contribution 0.435 0.271 -0.960 1.088 sum -1.676 -4.409 24.390 24.842 Atomic orbital electron populations 1.22148 0.94973 1.03369 1.01374 1.21716 0.94957 0.81536 1.03941 1.48296 1.64252 1.15098 1.06227 1.18632 0.95136 0.91398 0.80422 1.21690 0.97879 1.31848 1.06423 0.92776 1.25868 1.02370 0.94518 0.96486 1.70057 1.37840 1.34316 1.14827 0.85472 0.79091 0.78990 0.77274 1.18446 1.20549 1.20240 1.21155 0.77409 0.86789 0.86174 1.90603 1.46944 1.20258 1.87656 1.21990 1.02290 0.95948 0.87665 1.61448 1.52224 1.09245 1.02954 1.22444 0.92879 0.93063 1.00198 1.21398 1.02528 0.93895 0.81643 1.57768 1.68572 1.35443 1.22067 1.04780 0.76588 0.73926 0.74050 1.30436 1.19565 1.15288 1.15409 1.93526 1.62207 1.63149 1.80408 1.93640 1.80778 1.46596 1.75741 1.21247 0.95526 0.82608 0.95725 0.88802 1.22638 1.05273 1.02538 0.93127 1.22638 1.01120 0.96829 0.87526 0.92600 0.94438 0.88666 0.91006 0.88065 0.96422 0.98715 0.92502 0.85634 0.90406 0.95066 0.90781 0.88433 0.90451 0.83967 0.83547 0.83082 0.90073 0.88509 0.91402 0.87340 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.61 -25.36 2.46 -826.16 -2.03 -27.39 16 4 C 0.27 14.39 5.16 85.63 0.44 14.83 16 5 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.36 5.46 84.66 0.46 0.83 16 8 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 9 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.50 20.22 7.33 87.66 0.64 20.87 16 14 O -0.58 -29.12 13.94 -3.01 -0.04 -29.16 16 15 C 0.05 1.42 4.00 85.56 0.34 1.76 16 16 N -0.53 -14.53 4.36 -899.78 -3.93 -18.46 16 17 C 0.04 1.28 5.26 86.39 0.45 1.74 16 18 C 0.13 3.20 6.66 86.35 0.58 3.78 16 19 N -1.00 -19.22 3.25 -489.92 -1.59 -20.81 16 20 S 2.61 45.72 5.49 -56.49 -0.31 45.41 16 21 C -0.65 -4.99 10.73 113.37 1.22 -3.77 16 22 O -1.00 -25.87 16.32 -127.65 -2.08 -27.96 16 23 O -0.98 -20.89 13.64 -127.65 -1.74 -22.63 16 24 C 0.15 2.53 3.66 44.96 0.16 2.70 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 C -0.18 -2.23 7.62 71.98 0.55 -1.68 16 27 C 0.05 0.91 4.92 86.38 0.42 1.33 16 28 H 0.05 1.30 7.22 -2.39 -0.02 1.29 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 32 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 33 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 34 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 35 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 36 H 0.13 2.76 7.22 -2.39 -0.02 2.74 16 37 H 0.08 1.83 7.17 -2.39 -0.02 1.81 16 38 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 2.72 5.80 -2.39 -0.01 2.70 16 40 H 0.10 2.38 6.62 -2.39 -0.02 2.36 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.15 0.57 6.67 -2.39 -0.02 0.55 16 45 H 0.08 1.38 6.47 -2.39 -0.02 1.37 16 46 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.65 4.83 -2.38 -0.01 0.64 16 48 H 0.11 1.57 7.99 -2.38 -0.02 1.55 16 49 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 Total: -1.00 -84.17 389.35 -1.71 -85.88 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.94 Total: 12.89 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.76 Total: 11.73 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -7.26 Total: -123.17 kcal Atomic # 8 Polarization: -75.88 SS G_CDS: -3.87 Total: -79.75 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 45.72 SS G_CDS: -0.31 Total: 45.41 kcal Total: -84.17 -1.71 -85.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181592799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.879 kcal (2) G-P(sol) polarization free energy of solvation -84.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds