Wall clock time and date at job start Wed Apr 1 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 120.00149 * 2 1 4 4 C 1.50702 * 109.46836 * 270.00364 * 3 2 1 5 5 H 1.07994 * 120.00445 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99368 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46664 * 60.00603 * 8 6 4 10 10 H 1.48500 * 109.47160 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47130 * 300.00431 * 8 6 4 12 12 C 1.34777 * 119.99736 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99593 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00369 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.47254 * 179.97438 * 15 14 12 17 17 C 1.46902 * 111.00255 * 293.95367 * 16 15 14 18 18 C 1.46901 * 111.00103 * 169.99667 * 16 15 14 19 19 H 1.08998 * 110.63738 * 61.69356 * 18 16 15 20 20 C 1.55155 * 110.72263 * 298.55090 * 18 16 15 21 21 C 1.54906 * 101.58094 * 206.13265 * 20 18 16 22 22 N 1.47424 * 104.83498 * 37.00926 * 21 20 18 23 23 S 1.65597 * 125.65018 * 155.90647 * 22 21 20 24 24 C 1.81403 * 104.44796 * 89.97486 * 23 22 21 25 25 O 1.42103 * 104.27640 * 206.04399 * 23 22 21 26 26 O 1.42099 * 104.27845 * 333.90606 * 23 22 21 27 27 C 1.47026 * 108.70251 * 335.87123 * 22 21 20 28 28 H 1.08996 * 109.46784 * 269.99859 * 1 2 3 29 29 H 1.09003 * 109.47146 * 29.99481 * 1 2 3 30 30 H 1.08994 * 109.47096 * 150.00065 * 1 2 3 31 31 H 1.08998 * 109.46420 * 30.00391 * 3 2 1 32 32 H 1.08995 * 109.46904 * 150.00397 * 3 2 1 33 33 H 0.97004 * 119.99914 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47120 * 59.99760 * 14 12 2 35 35 H 1.08998 * 109.46862 * 300.00562 * 14 12 2 36 36 H 1.09002 * 109.47153 * 59.99773 * 15 14 12 37 37 H 1.09001 * 109.46832 * 299.99964 * 15 14 12 38 38 H 1.09005 * 109.46528 * 59.99744 * 17 16 15 39 39 H 1.09000 * 109.46785 * 179.97438 * 17 16 15 40 40 H 1.08997 * 109.47044 * 300.00388 * 17 16 15 41 41 H 1.08996 * 111.00369 * 324.20528 * 20 18 16 42 42 H 1.09004 * 111.00366 * 88.05475 * 20 18 16 43 43 H 1.09008 * 110.36853 * 155.84736 * 21 20 18 44 44 H 1.08997 * 110.36908 * 278.16794 * 21 20 18 45 45 H 1.09005 * 109.47230 * 60.00043 * 24 23 22 46 46 H 1.08998 * 109.46880 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47270 * 299.99735 * 24 23 22 48 48 H 1.09000 * 109.88123 * 241.64493 * 27 22 21 49 49 H 1.08994 * 109.88448 * 120.47057 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.1405 3.5938 -4.1344 10 1 4.1803 4.7030 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6451 -4.9074 0.0001 17 6 0.9000 -5.0846 1.2537 18 6 2.5514 -6.0387 -0.2381 19 1 3.2974 -6.1067 0.5537 20 6 3.2336 -5.9129 -1.6259 21 6 3.5407 -7.3946 -1.9570 22 7 2.3866 -8.1460 -1.4309 23 16 1.8817 -9.6327 -1.9572 24 6 2.7871 -10.8121 -0.9179 25 8 0.4945 -9.6605 -1.6505 26 8 2.3364 -9.7016 -3.3017 27 6 1.7585 -7.3570 -0.3610 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 4.0296 4.4443 -0.8503 34 1 0.7584 -2.5299 -0.8903 35 1 0.7591 -2.5302 0.8896 36 1 3.0063 -3.5775 0.8895 37 1 3.0062 -3.5775 -0.8905 38 1 0.1865 -4.2689 1.3706 39 1 0.3651 -6.0340 1.2273 40 1 1.5954 -5.0821 2.0931 41 1 2.5516 -5.4820 -2.3589 42 1 4.1517 -5.3291 -1.5584 43 1 3.6240 -7.5331 -3.0350 44 1 4.4580 -7.7120 -1.4610 45 1 2.5337 -10.6433 0.1287 46 1 2.5124 -11.8289 -1.1985 47 1 3.8588 -10.6729 -1.0593 48 1 1.8038 -7.9059 0.5797 49 1 0.7212 -7.1430 -0.6183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315023580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:43 Heat of formation + Delta-G solvation = -86.816799 kcal Electronic energy + Delta-G solvation = -28981.847448 eV Core-core repulsion = 24878.846866 eV Total energy + Delta-G solvation = -4103.000582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.67949 -38.84080 -37.49494 -36.42963 -36.28234 -34.78015 -32.65408 -31.39267 -30.62895 -29.90709 -28.54651 -27.72541 -26.36561 -25.55974 -23.35988 -22.51479 -21.70170 -20.29097 -19.30743 -18.38207 -18.08846 -17.21862 -16.59373 -16.54337 -16.32994 -15.87957 -15.42908 -15.35453 -14.75360 -14.55929 -14.31337 -14.17469 -14.06013 -13.82818 -13.62357 -13.42037 -13.14214 -12.98965 -12.51776 -12.49887 -12.44870 -12.37340 -12.16879 -12.12818 -12.00683 -11.80779 -11.60367 -11.48120 -11.41448 -11.24879 -11.11126 -11.06314 -10.89482 -10.69643 -10.53538 -10.14975 -9.63488 -9.37938 -8.89048 -8.51269 -8.42651 -7.63156 -6.03619 -4.08357 -0.20270 2.19372 3.32741 3.36874 3.38160 3.44857 3.46969 3.51684 3.68873 4.06248 4.16461 4.24631 4.33656 4.46052 4.54671 4.83593 4.90031 4.95086 5.10455 5.14384 5.16406 5.18314 5.27187 5.30610 5.33388 5.37994 5.50778 5.55281 5.59534 5.61802 5.71034 5.76489 5.84375 5.91247 5.94026 6.02127 6.09680 6.14938 6.24590 6.87897 6.91041 7.06908 7.44556 7.55121 7.92742 8.24302 8.43445 8.90866 9.10670 9.56702 11.04377 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002013 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.839751 B =13909.163221 C =14672.579560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.547 6.547 14 C -0.135 4.135 15 C 0.072 3.928 16 N -0.535 5.535 17 C 0.016 3.984 18 C 0.075 3.925 19 H 0.059 0.941 20 C -0.124 4.124 21 C 0.116 3.884 22 N -1.012 6.012 23 S 2.629 3.371 24 C -0.675 4.675 25 O -0.951 6.951 26 O -0.952 6.952 27 C 0.128 3.872 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.062 0.938 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -27.621 3.940 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.176 4.176 15 C -0.056 4.056 16 N -0.260 5.260 17 C -0.132 4.132 18 C -0.035 4.035 19 H 0.077 0.923 20 C -0.163 4.163 21 C -0.009 4.009 22 N -0.851 5.851 23 S 2.722 3.278 24 C -0.824 4.824 25 O -0.942 6.942 26 O -0.942 6.942 27 C 0.003 3.997 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.080 0.920 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.479 -27.669 2.901 28.179 hybrid contribution 1.137 0.231 0.361 1.216 sum -3.341 -27.438 3.262 27.832 Atomic orbital electron populations 1.21639 0.81421 1.02680 1.00327 1.48167 1.06207 1.07899 1.71263 1.19274 0.92510 0.78163 0.97471 1.21394 1.36512 1.06245 0.92292 0.92515 1.24947 0.95384 0.96405 0.97458 1.69925 1.38406 1.14344 1.30796 0.86550 0.78371 0.77796 0.84647 1.20241 1.21202 1.20164 1.20301 0.88060 0.85177 0.77414 1.90662 1.13997 1.87395 1.50443 1.21642 0.99269 0.92621 1.04049 1.21844 0.94665 0.86428 1.02636 1.62044 1.27309 1.01686 1.34925 1.22508 0.98295 1.02759 0.89676 1.22627 0.93294 0.89950 0.97628 0.92324 1.22886 1.01582 0.95180 0.96636 1.22078 0.87366 0.91459 1.00015 1.58561 1.42394 1.33913 1.50226 1.04384 0.74738 0.73670 0.74981 1.30600 1.16112 1.18250 1.17486 1.93616 1.29174 1.85709 1.85660 1.93614 1.83052 1.85719 1.31835 1.21729 0.98249 0.90936 0.88832 0.93861 0.90847 0.92254 0.95099 0.93912 0.92684 0.88644 0.89773 0.93852 0.89519 0.90710 0.91294 0.95419 0.89045 0.89523 0.89385 0.91542 0.85466 0.85450 0.85397 0.91976 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.67 2.86 -182.95 -0.52 -13.19 16 3 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.50 10.16 7.67 -10.99 -0.08 10.07 16 13 O -0.55 -13.36 15.56 5.55 0.09 -13.27 16 14 C -0.14 -1.89 4.18 -27.89 -0.12 -2.01 16 15 C 0.07 0.93 4.12 -3.83 -0.02 0.91 16 16 N -0.54 -5.49 4.58 -232.68 -1.07 -6.56 16 17 C 0.02 0.13 9.11 60.07 0.55 0.68 16 18 C 0.08 0.65 2.64 -65.88 -0.17 0.48 16 19 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 20 C -0.12 -1.08 5.42 -24.59 -0.13 -1.21 16 21 C 0.12 0.84 7.07 -2.53 -0.02 0.82 16 22 N -1.01 -7.73 3.62 -111.42 -0.40 -8.13 16 23 S 2.63 20.18 6.29 -107.50 -0.68 19.51 16 24 C -0.67 -2.46 10.99 101.05 1.11 -1.35 16 25 O -0.95 -10.56 17.60 -57.54 -1.01 -11.58 16 26 O -0.95 -10.52 17.28 -57.54 -0.99 -11.52 16 27 C 0.13 1.00 5.40 -3.06 -0.02 0.98 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 35 H 0.08 1.00 6.52 -51.93 -0.34 0.66 16 36 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.09 1.23 6.67 -51.93 -0.35 0.88 16 38 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 39 H 0.07 0.49 6.83 -51.93 -0.35 0.13 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.73 7.87 -51.93 -0.41 0.33 16 43 H 0.09 0.67 7.67 -51.92 -0.40 0.27 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.13 0.32 8.14 -51.92 -0.42 -0.11 16 46 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.09 0.80 7.65 -51.93 -0.40 0.40 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -37.96 403.37 -9.82 -47.79 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -8.29 Total: -4.15 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 1.27 Total: 4.06 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -1.26 Total: -53.80 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.92 Total: -36.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 20.18 SS G_CDS: -0.68 Total: 19.51 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.96 -9.82 -47.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315023580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.031 kcal (2) G-P(sol) polarization free energy of solvation -37.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds