Wall clock time and date at job start Wed Apr 1 2020 05:55:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46496 * 120.00398 * 2 1
4 4 C 1.50698 * 109.47161 * 270.00003 * 3 2 1
5 5 H 1.07993 * 120.00117 * 359.97438 * 4 3 2
6 6 C 1.37885 * 119.99811 * 179.97438 * 4 3 2
7 7 N 1.31506 * 119.99847 * 180.02562 * 6 4 3
8 8 Si 1.86798 * 120.00026 * 0.02562 * 6 4 3
9 9 H 1.48494 * 109.47533 * 90.00020 * 8 6 4
10 10 H 1.48501 * 109.47115 * 210.00088 * 8 6 4
11 11 H 1.48501 * 109.46969 * 329.99758 * 8 6 4
12 12 C 1.34777 * 119.99944 * 179.97438 * 2 1 3
13 13 O 1.21279 * 120.00354 * 179.97438 * 12 2 1
14 14 C 1.50704 * 119.99935 * 0.02562 * 12 2 1
15 15 C 1.52997 * 109.47070 * 179.97438 * 14 12 2
16 16 N 1.46905 * 109.47053 * 179.97438 * 15 14 12
17 17 C 1.46906 * 110.99995 * 66.04702 * 16 15 14
18 18 C 1.46897 * 111.00158 * 189.99961 * 16 15 14
19 19 H 1.09007 * 110.64154 * 303.14199 * 18 16 15
20 20 C 1.55157 * 110.72115 * 66.47629 * 18 16 15
21 21 C 1.54911 * 101.58031 * 153.86654 * 20 18 16
22 22 N 1.47425 * 104.83279 * 322.99014 * 21 20 18
23 23 S 1.65599 * 125.64691 * 204.09370 * 22 21 20
24 24 C 1.81397 * 104.44785 * 270.04311 * 23 22 21
25 25 O 1.42094 * 104.27743 * 26.11625 * 23 22 21
26 26 O 1.42107 * 104.27641 * 153.97392 * 23 22 21
27 27 C 1.47026 * 108.70172 * 24.13260 * 22 21 20
28 28 H 1.08997 * 109.47187 * 269.99849 * 1 2 3
29 29 H 1.09004 * 109.46745 * 30.00125 * 1 2 3
30 30 H 1.08993 * 109.46963 * 149.99630 * 1 2 3
31 31 H 1.09004 * 109.46921 * 30.00016 * 3 2 1
32 32 H 1.09002 * 109.47239 * 149.99847 * 3 2 1
33 33 H 0.97000 * 120.00060 * 180.02562 * 7 6 4
34 34 H 1.09002 * 109.46866 * 59.99781 * 14 12 2
35 35 H 1.08994 * 109.47022 * 299.99836 * 14 12 2
36 36 H 1.09002 * 109.47313 * 60.00227 * 15 14 12
37 37 H 1.09005 * 109.47359 * 299.99444 * 15 14 12
38 38 H 1.08992 * 109.47459 * 183.95199 * 17 16 15
39 39 H 1.09004 * 109.47040 * 303.95350 * 17 16 15
40 40 H 1.09000 * 109.47033 * 63.95302 * 17 16 15
41 41 H 1.08993 * 111.00541 * 271.94353 * 20 18 16
42 42 H 1.08997 * 111.00278 * 35.79221 * 20 18 16
43 43 H 1.09005 * 110.36584 * 204.15360 * 21 20 18
44 44 H 1.08998 * 110.46009 * 81.88314 * 21 20 18
45 45 H 1.08997 * 109.47500 * 60.00162 * 24 23 22
46 46 H 1.09004 * 109.47315 * 180.02562 * 24 23 22
47 47 H 1.09007 * 109.47389 * 300.00120 * 24 23 22
48 48 H 1.08994 * 109.87870 * 239.52165 * 27 22 21
49 49 H 1.08996 * 109.88262 * 118.35676 * 27 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2686 0.0000
4 6 2.4488 1.7037 -1.4208
5 1 2.0982 1.0957 -2.2416
6 6 3.1262 2.8779 -1.6727
7 7 3.3450 3.2578 -2.9125
8 14 3.7332 3.9291 -0.2528
9 1 5.1067 3.5080 0.1231
10 1 3.7481 5.3559 -0.6643
11 1 2.8273 3.7591 0.9115
12 6 2.1389 -1.1672 0.0005
13 8 3.3517 -1.1673 0.0001
14 6 1.3854 -2.4723 0.0005
15 6 2.3796 -3.6352 0.0005
16 7 1.6450 -4.9075 0.0011
17 6 0.8991 -5.0853 -1.2519
18 6 2.5514 -6.0386 0.2393
19 1 3.3475 -6.0565 -0.5051
20 6 3.1380 -5.9794 1.6745
21 6 3.4461 -7.4730 1.9464
22 7 2.3415 -8.2091 1.3049
23 16 1.8266 -9.7282 1.7166
24 6 2.8181 -10.8385 0.6798
25 8 2.1917 -9.8636 3.0831
26 8 0.4635 -9.7567 1.3160
27 6 1.7734 -7.3713 0.2385
28 1 -0.3633 0.0000 1.0276
29 1 -0.3633 0.8900 -0.5139
30 1 -0.3633 -0.8899 -0.5139
31 1 1.6085 2.0283 0.5139
32 1 3.1500 1.1383 0.5139
33 1 3.8219 4.0836 -3.0898
34 1 0.7590 -2.5302 -0.8897
35 1 0.7584 -2.5298 0.8902
36 1 3.0062 -3.5776 0.8905
37 1 3.0062 -3.5776 -0.8895
38 1 0.3094 -6.0002 -1.1970
39 1 0.2357 -4.2339 -1.4038
40 1 1.5990 -5.1537 -2.0848
41 1 4.0490 -5.3816 1.6999
42 1 2.4020 -5.5972 2.3818
43 1 3.4598 -7.6684 3.0188
44 1 4.3994 -7.7531 1.4984
45 1 3.8756 -10.6936 0.9002
46 1 2.5417 -11.8723 0.8869
47 1 2.6323 -10.6167 -0.3712
48 1 0.7180 -7.1845 0.4366
49 1 1.8897 -7.8680 -0.7247
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000315023583.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:55:47
Heat of formation + Delta-G solvation = -82.168803 kcal
Electronic energy + Delta-G solvation = -28957.243771 eV
Core-core repulsion = 24854.444741 eV
Total energy + Delta-G solvation = -4102.799030 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-39.71955 -38.94980 -37.51996 -36.45904 -36.30984 -34.91052 -32.61040 -31.48502
-30.66665 -29.92209 -28.79514 -28.06870 -26.43388 -25.72842 -23.20148 -22.52937
-21.50583 -20.32038 -19.33448 -18.43427 -18.12267 -17.26174 -16.97566 -16.64102
-16.38463 -15.92388 -15.49586 -15.45297 -14.74587 -14.66170 -14.32952 -14.22473
-14.00548 -13.82553 -13.63173 -13.31950 -13.19342 -13.00654 -12.74252 -12.52116
-12.47183 -12.39918 -12.32842 -12.24129 -12.04534 -11.97291 -11.73870 -11.53795
-11.48645 -11.37866 -11.17691 -11.10131 -10.94601 -10.70040 -10.51928 -10.14934
-9.55734 -9.40830 -9.01890 -8.60209 -8.52326 -7.70549 -6.10090 -4.08731
-0.22411 2.16905 3.28328 3.34070 3.35089 3.36088 3.42513 3.48419
3.65268 3.99452 4.10432 4.22780 4.31757 4.38551 4.52844 4.81492
4.87061 4.93350 5.07729 5.12478 5.13681 5.14527 5.20500 5.28693
5.30323 5.35768 5.47561 5.51756 5.55880 5.57833 5.69482 5.73589
5.85229 5.86680 5.87325 5.99108 6.02517 6.11624 6.17530 6.69092
6.85942 6.89645 6.94460 7.33108 7.60105 8.24687 8.45813 8.91343
8.97983 9.50337 11.03286
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028017 B = 0.001870 C = 0.001844
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.170320 B =14968.526106 C =15183.926449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.599 5.599
3 C 0.215 3.785
4 C -0.528 4.528
5 H 0.073 0.927
6 C 0.071 3.929
7 N -0.898 5.898
8 Si 0.878 3.122
9 H -0.274 1.274
10 H -0.285 1.285
11 H -0.266 1.266
12 C 0.507 3.493
13 O -0.545 6.545
14 C -0.135 4.135
15 C 0.072 3.928
16 N -0.535 5.535
17 C 0.013 3.987
18 C 0.075 3.925
19 H 0.060 0.940
20 C -0.121 4.121
21 C 0.116 3.884
22 N -1.012 6.012
23 S 2.629 3.371
24 C -0.675 4.675
25 O -0.952 6.952
26 O -0.951 6.951
27 C 0.127 3.873
28 H 0.046 0.954
29 H 0.075 0.925
30 H 0.061 0.939
31 H 0.029 0.971
32 H 0.036 0.964
33 H 0.264 0.736
34 H 0.088 0.912
35 H 0.094 0.906
36 H 0.084 0.916
37 H 0.046 0.954
38 H 0.070 0.930
39 H 0.075 0.925
40 H 0.029 0.971
41 H 0.085 0.915
42 H 0.090 0.910
43 H 0.087 0.913
44 H 0.066 0.934
45 H 0.127 0.873
46 H 0.127 0.873
47 H 0.127 0.873
48 H 0.087 0.913
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.823 -26.989 7.277 28.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.331 5.331
3 C 0.094 3.906
4 C -0.566 4.566
5 H 0.091 0.909
6 C -0.131 4.131
7 N -0.536 5.536
8 Si 0.705 3.295
9 H -0.199 1.199
10 H -0.211 1.211
11 H -0.191 1.191
12 C 0.294 3.706
13 O -0.423 6.423
14 C -0.175 4.175
15 C -0.056 4.056
16 N -0.259 5.259
17 C -0.135 4.135
18 C -0.036 4.036
19 H 0.078 0.922
20 C -0.161 4.161
21 C -0.009 4.009
22 N -0.851 5.851
23 S 2.722 3.278
24 C -0.825 4.825
25 O -0.943 6.943
26 O -0.941 6.941
27 C 0.001 3.999
28 H 0.064 0.936
29 H 0.093 0.907
30 H 0.079 0.921
31 H 0.047 0.953
32 H 0.054 0.946
33 H 0.074 0.926
34 H 0.106 0.894
35 H 0.113 0.887
36 H 0.103 0.897
37 H 0.064 0.936
38 H 0.089 0.911
39 H 0.094 0.906
40 H 0.047 0.953
41 H 0.104 0.896
42 H 0.109 0.891
43 H 0.106 0.894
44 H 0.085 0.915
45 H 0.146 0.854
46 H 0.146 0.854
47 H 0.146 0.854
48 H 0.105 0.895
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -4.134 -27.114 8.197 28.626
hybrid contribution 1.370 0.527 -0.836 1.689
sum -2.764 -26.587 7.361 27.725
Atomic orbital electron populations
1.21663 0.80879 1.02969 1.00510 1.47843 1.06327 1.07167 1.71720
1.19658 0.92466 0.80153 0.98312 1.21324 1.36957 1.07089 0.91275
0.90852 1.24874 0.95276 0.97381 0.95614 1.69894 1.41505 1.23575
1.18669 0.86828 0.80101 0.79709 0.82907 1.19925 1.21086 1.19056
1.20330 0.88038 0.85168 0.77096 1.90660 1.14020 1.87379 1.50284
1.21634 0.99291 0.92356 1.04218 1.21833 0.94646 0.86492 1.02645
1.62071 1.27167 1.01618 1.35066 1.22537 0.98301 1.02930 0.89713
1.22640 0.93625 0.89776 0.97512 0.92213 1.22852 1.02006 0.94931
0.96277 1.22077 0.88554 0.91724 0.98590 1.58564 1.47287 1.31579
1.47669 1.04378 0.74895 0.73404 0.75083 1.30600 1.16989 1.17402
1.17464 1.93610 1.84850 1.85394 1.30429 1.93618 1.30655 1.85603
1.84274 1.21762 0.99050 0.90123 0.88951 0.93587 0.90663 0.92077
0.95271 0.94576 0.92573 0.89350 0.88719 0.89730 0.93603 0.91141
0.90638 0.95276 0.89636 0.89125 0.89444 0.91533 0.85387 0.85429
0.85424 0.89473 0.91876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.25 10.24 59.85 0.61 1.86 16
2 N -0.60 -12.11 2.86 -182.96 -0.52 -12.63 16
3 C 0.21 5.23 4.23 -5.20 -0.02 5.21 16
4 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16
5 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16
6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16
7 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16
8 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16
9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
11 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16
12 C 0.51 9.92 7.67 -10.98 -0.08 9.83 16
13 O -0.55 -12.93 15.56 5.56 0.09 -12.85 16
14 C -0.13 -1.83 4.18 -27.88 -0.12 -1.95 16
15 C 0.07 0.91 4.15 -3.82 -0.02 0.89 16
16 N -0.53 -5.39 4.59 -232.67 -1.07 -6.46 16
17 C 0.01 0.12 9.05 60.07 0.54 0.66 16
18 C 0.07 0.64 2.64 -65.88 -0.17 0.46 16
19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
20 C -0.12 -0.97 5.66 -24.58 -0.14 -1.11 16
21 C 0.12 0.78 7.07 -2.53 -0.02 0.76 16
22 N -1.01 -7.39 3.62 -111.42 -0.40 -7.80 16
23 S 2.63 19.43 6.29 -107.50 -0.68 18.75 16
24 C -0.67 -2.38 10.99 101.05 1.11 -1.27 16
25 O -0.95 -10.12 17.28 -57.54 -0.99 -11.11 16
26 O -0.95 -10.32 17.60 -57.54 -1.01 -11.33 16
27 C 0.13 0.97 5.42 -3.06 -0.02 0.95 16
28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16
30 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16
31 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16
32 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16
33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
34 H 0.09 1.09 5.73 -51.93 -0.30 0.79 16
35 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16
36 H 0.08 1.11 6.89 -51.93 -0.36 0.76 16
37 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16
38 H 0.07 0.53 6.64 -51.93 -0.34 0.18 16
39 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16
40 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16
41 H 0.09 0.65 7.89 -51.93 -0.41 0.24 16
42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16
43 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16
44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
45 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16
46 H 0.13 0.31 8.14 -51.92 -0.42 -0.12 16
47 H 0.13 0.32 8.14 -51.92 -0.42 -0.11 16
48 H 0.09 0.77 7.30 -51.93 -0.38 0.39 16
49 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
LS Contribution 399.45 15.07 6.02 6.02
Total: -1.00 -38.68 399.45 -9.46 -48.14
By element:
Atomic # 1 Polarization: 4.66 SS G_CDS: -8.23 Total: -3.57 kcal
Atomic # 6 Polarization: 1.57 SS G_CDS: 1.24 Total: 2.82 kcal
Atomic # 7 Polarization: -52.48 SS G_CDS: -1.22 Total: -53.70 kcal
Atomic # 8 Polarization: -33.37 SS G_CDS: -1.92 Total: -35.29 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal
Atomic # 16 Polarization: 19.43 SS G_CDS: -0.68 Total: 18.75 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -38.68 -9.46 -48.14 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000315023583.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.032 kcal
(2) G-P(sol) polarization free energy of solvation -38.681 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds