Wall clock time and date at job start Wed Apr 1 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00398 * 2 1 4 4 C 1.50698 * 109.47161 * 270.00003 * 3 2 1 5 5 H 1.07993 * 120.00117 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99811 * 179.97438 * 4 3 2 7 7 N 1.31506 * 119.99847 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00026 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47533 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.47115 * 210.00088 * 8 6 4 11 11 H 1.48501 * 109.46969 * 329.99758 * 8 6 4 12 12 C 1.34777 * 119.99944 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00354 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99935 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47070 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.47053 * 179.97438 * 15 14 12 17 17 C 1.46906 * 110.99995 * 66.04702 * 16 15 14 18 18 C 1.46897 * 111.00158 * 189.99961 * 16 15 14 19 19 H 1.09007 * 110.64154 * 303.14199 * 18 16 15 20 20 C 1.55157 * 110.72115 * 66.47629 * 18 16 15 21 21 C 1.54911 * 101.58031 * 153.86654 * 20 18 16 22 22 N 1.47425 * 104.83279 * 322.99014 * 21 20 18 23 23 S 1.65599 * 125.64691 * 204.09370 * 22 21 20 24 24 C 1.81397 * 104.44785 * 270.04311 * 23 22 21 25 25 O 1.42094 * 104.27743 * 26.11625 * 23 22 21 26 26 O 1.42107 * 104.27641 * 153.97392 * 23 22 21 27 27 C 1.47026 * 108.70172 * 24.13260 * 22 21 20 28 28 H 1.08997 * 109.47187 * 269.99849 * 1 2 3 29 29 H 1.09004 * 109.46745 * 30.00125 * 1 2 3 30 30 H 1.08993 * 109.46963 * 149.99630 * 1 2 3 31 31 H 1.09004 * 109.46921 * 30.00016 * 3 2 1 32 32 H 1.09002 * 109.47239 * 149.99847 * 3 2 1 33 33 H 0.97000 * 120.00060 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46866 * 59.99781 * 14 12 2 35 35 H 1.08994 * 109.47022 * 299.99836 * 14 12 2 36 36 H 1.09002 * 109.47313 * 60.00227 * 15 14 12 37 37 H 1.09005 * 109.47359 * 299.99444 * 15 14 12 38 38 H 1.08992 * 109.47459 * 183.95199 * 17 16 15 39 39 H 1.09004 * 109.47040 * 303.95350 * 17 16 15 40 40 H 1.09000 * 109.47033 * 63.95302 * 17 16 15 41 41 H 1.08993 * 111.00541 * 271.94353 * 20 18 16 42 42 H 1.08997 * 111.00278 * 35.79221 * 20 18 16 43 43 H 1.09005 * 110.36584 * 204.15360 * 21 20 18 44 44 H 1.08998 * 110.46009 * 81.88314 * 21 20 18 45 45 H 1.08997 * 109.47500 * 60.00162 * 24 23 22 46 46 H 1.09004 * 109.47315 * 180.02562 * 24 23 22 47 47 H 1.09007 * 109.47389 * 300.00120 * 24 23 22 48 48 H 1.08994 * 109.87870 * 239.52165 * 27 22 21 49 49 H 1.08996 * 109.88262 * 118.35676 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1262 2.8779 -1.6727 7 7 3.3450 3.2578 -2.9125 8 14 3.7332 3.9291 -0.2528 9 1 5.1067 3.5080 0.1231 10 1 3.7481 5.3559 -0.6643 11 1 2.8273 3.7591 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 0.8991 -5.0853 -1.2519 18 6 2.5514 -6.0386 0.2393 19 1 3.3475 -6.0565 -0.5051 20 6 3.1380 -5.9794 1.6745 21 6 3.4461 -7.4730 1.9464 22 7 2.3415 -8.2091 1.3049 23 16 1.8266 -9.7282 1.7166 24 6 2.8181 -10.8385 0.6798 25 8 2.1917 -9.8636 3.0831 26 8 0.4635 -9.7567 1.3160 27 6 1.7734 -7.3713 0.2385 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5139 33 1 3.8219 4.0836 -3.0898 34 1 0.7590 -2.5302 -0.8897 35 1 0.7584 -2.5298 0.8902 36 1 3.0062 -3.5776 0.8905 37 1 3.0062 -3.5776 -0.8895 38 1 0.3094 -6.0002 -1.1970 39 1 0.2357 -4.2339 -1.4038 40 1 1.5990 -5.1537 -2.0848 41 1 4.0490 -5.3816 1.6999 42 1 2.4020 -5.5972 2.3818 43 1 3.4598 -7.6684 3.0188 44 1 4.3994 -7.7531 1.4984 45 1 3.8756 -10.6936 0.9002 46 1 2.5417 -11.8723 0.8869 47 1 2.6323 -10.6167 -0.3712 48 1 0.7180 -7.1845 0.4366 49 1 1.8897 -7.8680 -0.7247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315023583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:47 Heat of formation + Delta-G solvation = -82.168803 kcal Electronic energy + Delta-G solvation = -28957.243771 eV Core-core repulsion = 24854.444741 eV Total energy + Delta-G solvation = -4102.799030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.71955 -38.94980 -37.51996 -36.45904 -36.30984 -34.91052 -32.61040 -31.48502 -30.66665 -29.92209 -28.79514 -28.06870 -26.43388 -25.72842 -23.20148 -22.52937 -21.50583 -20.32038 -19.33448 -18.43427 -18.12267 -17.26174 -16.97566 -16.64102 -16.38463 -15.92388 -15.49586 -15.45297 -14.74587 -14.66170 -14.32952 -14.22473 -14.00548 -13.82553 -13.63173 -13.31950 -13.19342 -13.00654 -12.74252 -12.52116 -12.47183 -12.39918 -12.32842 -12.24129 -12.04534 -11.97291 -11.73870 -11.53795 -11.48645 -11.37866 -11.17691 -11.10131 -10.94601 -10.70040 -10.51928 -10.14934 -9.55734 -9.40830 -9.01890 -8.60209 -8.52326 -7.70549 -6.10090 -4.08731 -0.22411 2.16905 3.28328 3.34070 3.35089 3.36088 3.42513 3.48419 3.65268 3.99452 4.10432 4.22780 4.31757 4.38551 4.52844 4.81492 4.87061 4.93350 5.07729 5.12478 5.13681 5.14527 5.20500 5.28693 5.30323 5.35768 5.47561 5.51756 5.55880 5.57833 5.69482 5.73589 5.85229 5.86680 5.87325 5.99108 6.02517 6.11624 6.17530 6.69092 6.85942 6.89645 6.94460 7.33108 7.60105 8.24687 8.45813 8.91343 8.97983 9.50337 11.03286 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.001870 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.170320 B =14968.526106 C =15183.926449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.878 3.122 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.545 6.545 14 C -0.135 4.135 15 C 0.072 3.928 16 N -0.535 5.535 17 C 0.013 3.987 18 C 0.075 3.925 19 H 0.060 0.940 20 C -0.121 4.121 21 C 0.116 3.884 22 N -1.012 6.012 23 S 2.629 3.371 24 C -0.675 4.675 25 O -0.952 6.952 26 O -0.951 6.951 27 C 0.127 3.873 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.087 0.913 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -26.989 7.277 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.705 3.295 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.423 6.423 14 C -0.175 4.175 15 C -0.056 4.056 16 N -0.259 5.259 17 C -0.135 4.135 18 C -0.036 4.036 19 H 0.078 0.922 20 C -0.161 4.161 21 C -0.009 4.009 22 N -0.851 5.851 23 S 2.722 3.278 24 C -0.825 4.825 25 O -0.943 6.943 26 O -0.941 6.941 27 C 0.001 3.999 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.105 0.895 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.134 -27.114 8.197 28.626 hybrid contribution 1.370 0.527 -0.836 1.689 sum -2.764 -26.587 7.361 27.725 Atomic orbital electron populations 1.21663 0.80879 1.02969 1.00510 1.47843 1.06327 1.07167 1.71720 1.19658 0.92466 0.80153 0.98312 1.21324 1.36957 1.07089 0.91275 0.90852 1.24874 0.95276 0.97381 0.95614 1.69894 1.41505 1.23575 1.18669 0.86828 0.80101 0.79709 0.82907 1.19925 1.21086 1.19056 1.20330 0.88038 0.85168 0.77096 1.90660 1.14020 1.87379 1.50284 1.21634 0.99291 0.92356 1.04218 1.21833 0.94646 0.86492 1.02645 1.62071 1.27167 1.01618 1.35066 1.22537 0.98301 1.02930 0.89713 1.22640 0.93625 0.89776 0.97512 0.92213 1.22852 1.02006 0.94931 0.96277 1.22077 0.88554 0.91724 0.98590 1.58564 1.47287 1.31579 1.47669 1.04378 0.74895 0.73404 0.75083 1.30600 1.16989 1.17402 1.17464 1.93610 1.84850 1.85394 1.30429 1.93618 1.30655 1.85603 1.84274 1.21762 0.99050 0.90123 0.88951 0.93587 0.90663 0.92077 0.95271 0.94576 0.92573 0.89350 0.88719 0.89730 0.93603 0.91141 0.90638 0.95276 0.89636 0.89125 0.89444 0.91533 0.85387 0.85429 0.85424 0.89473 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.85 0.61 1.86 16 2 N -0.60 -12.11 2.86 -182.96 -0.52 -12.63 16 3 C 0.21 5.23 4.23 -5.20 -0.02 5.21 16 4 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 5 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 8 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 12 C 0.51 9.92 7.67 -10.98 -0.08 9.83 16 13 O -0.55 -12.93 15.56 5.56 0.09 -12.85 16 14 C -0.13 -1.83 4.18 -27.88 -0.12 -1.95 16 15 C 0.07 0.91 4.15 -3.82 -0.02 0.89 16 16 N -0.53 -5.39 4.59 -232.67 -1.07 -6.46 16 17 C 0.01 0.12 9.05 60.07 0.54 0.66 16 18 C 0.07 0.64 2.64 -65.88 -0.17 0.46 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.12 -0.97 5.66 -24.58 -0.14 -1.11 16 21 C 0.12 0.78 7.07 -2.53 -0.02 0.76 16 22 N -1.01 -7.39 3.62 -111.42 -0.40 -7.80 16 23 S 2.63 19.43 6.29 -107.50 -0.68 18.75 16 24 C -0.67 -2.38 10.99 101.05 1.11 -1.27 16 25 O -0.95 -10.12 17.28 -57.54 -0.99 -11.11 16 26 O -0.95 -10.32 17.60 -57.54 -1.01 -11.33 16 27 C 0.13 0.97 5.42 -3.06 -0.02 0.95 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 31 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 32 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.09 1.09 5.73 -51.93 -0.30 0.79 16 35 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.08 1.11 6.89 -51.93 -0.36 0.76 16 37 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.07 0.53 6.64 -51.93 -0.34 0.18 16 39 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.65 7.89 -51.93 -0.41 0.24 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.13 0.31 8.14 -51.92 -0.42 -0.12 16 47 H 0.13 0.32 8.14 -51.92 -0.42 -0.11 16 48 H 0.09 0.77 7.30 -51.93 -0.38 0.39 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -38.68 399.45 -9.46 -48.14 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -8.23 Total: -3.57 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 1.24 Total: 2.82 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -1.22 Total: -53.70 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.92 Total: -35.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 19.43 SS G_CDS: -0.68 Total: 18.75 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.68 -9.46 -48.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315023583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.032 kcal (2) G-P(sol) polarization free energy of solvation -38.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds