Wall clock time and date at job start Wed Apr 1 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00398 * 2 1 4 4 C 1.50698 * 109.47161 * 270.00003 * 3 2 1 5 5 H 1.07993 * 120.00117 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99811 * 179.97438 * 4 3 2 7 7 N 1.31506 * 119.99847 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00026 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47533 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.47115 * 210.00088 * 8 6 4 11 11 H 1.48501 * 109.46969 * 329.99758 * 8 6 4 12 12 C 1.34777 * 119.99944 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00354 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99935 * 0.02562 * 12 2 1 15 15 C 1.52997 * 109.47070 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.47053 * 179.97438 * 15 14 12 17 17 C 1.46906 * 110.99995 * 66.04702 * 16 15 14 18 18 C 1.46897 * 111.00158 * 189.99961 * 16 15 14 19 19 H 1.09007 * 110.64154 * 303.14199 * 18 16 15 20 20 C 1.55157 * 110.72115 * 66.47629 * 18 16 15 21 21 C 1.54911 * 101.58031 * 153.86654 * 20 18 16 22 22 N 1.47425 * 104.83279 * 322.99014 * 21 20 18 23 23 S 1.65599 * 125.64691 * 204.09370 * 22 21 20 24 24 C 1.81397 * 104.44785 * 270.04311 * 23 22 21 25 25 O 1.42094 * 104.27743 * 26.11625 * 23 22 21 26 26 O 1.42107 * 104.27641 * 153.97392 * 23 22 21 27 27 C 1.47026 * 108.70172 * 24.13260 * 22 21 20 28 28 H 1.08997 * 109.47187 * 269.99849 * 1 2 3 29 29 H 1.09004 * 109.46745 * 30.00125 * 1 2 3 30 30 H 1.08993 * 109.46963 * 149.99630 * 1 2 3 31 31 H 1.09004 * 109.46921 * 30.00016 * 3 2 1 32 32 H 1.09002 * 109.47239 * 149.99847 * 3 2 1 33 33 H 0.97000 * 120.00060 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46866 * 59.99781 * 14 12 2 35 35 H 1.08994 * 109.47022 * 299.99836 * 14 12 2 36 36 H 1.09002 * 109.47313 * 60.00227 * 15 14 12 37 37 H 1.09005 * 109.47359 * 299.99444 * 15 14 12 38 38 H 1.08992 * 109.47459 * 183.95199 * 17 16 15 39 39 H 1.09004 * 109.47040 * 303.95350 * 17 16 15 40 40 H 1.09000 * 109.47033 * 63.95302 * 17 16 15 41 41 H 1.08993 * 111.00541 * 271.94353 * 20 18 16 42 42 H 1.08997 * 111.00278 * 35.79221 * 20 18 16 43 43 H 1.09005 * 110.36584 * 204.15360 * 21 20 18 44 44 H 1.08998 * 110.46009 * 81.88314 * 21 20 18 45 45 H 1.08997 * 109.47500 * 60.00162 * 24 23 22 46 46 H 1.09004 * 109.47315 * 180.02562 * 24 23 22 47 47 H 1.09007 * 109.47389 * 300.00120 * 24 23 22 48 48 H 1.08994 * 109.87870 * 239.52165 * 27 22 21 49 49 H 1.08996 * 109.88262 * 118.35676 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1262 2.8779 -1.6727 7 7 3.3450 3.2578 -2.9125 8 14 3.7332 3.9291 -0.2528 9 1 5.1067 3.5080 0.1231 10 1 3.7481 5.3559 -0.6643 11 1 2.8273 3.7591 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 0.8991 -5.0853 -1.2519 18 6 2.5514 -6.0386 0.2393 19 1 3.3475 -6.0565 -0.5051 20 6 3.1380 -5.9794 1.6745 21 6 3.4461 -7.4730 1.9464 22 7 2.3415 -8.2091 1.3049 23 16 1.8266 -9.7282 1.7166 24 6 2.8181 -10.8385 0.6798 25 8 2.1917 -9.8636 3.0831 26 8 0.4635 -9.7567 1.3160 27 6 1.7734 -7.3713 0.2385 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5139 33 1 3.8219 4.0836 -3.0898 34 1 0.7590 -2.5302 -0.8897 35 1 0.7584 -2.5298 0.8902 36 1 3.0062 -3.5776 0.8905 37 1 3.0062 -3.5776 -0.8895 38 1 0.3094 -6.0002 -1.1970 39 1 0.2357 -4.2339 -1.4038 40 1 1.5990 -5.1537 -2.0848 41 1 4.0490 -5.3816 1.6999 42 1 2.4020 -5.5972 2.3818 43 1 3.4598 -7.6684 3.0188 44 1 4.3994 -7.7531 1.4984 45 1 3.8756 -10.6936 0.9002 46 1 2.5417 -11.8723 0.8869 47 1 2.6323 -10.6167 -0.3712 48 1 0.7180 -7.1845 0.4366 49 1 1.8897 -7.8680 -0.7247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315023583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:46 Heat of formation + Delta-G solvation = -114.127841 kcal Electronic energy + Delta-G solvation = -28958.629619 eV Core-core repulsion = 24854.444741 eV Total energy + Delta-G solvation = -4104.184878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.84822 -40.03532 -38.20020 -37.27335 -37.01242 -36.55623 -34.70774 -32.62014 -31.32985 -30.38205 -30.25113 -28.95457 -27.48257 -27.02707 -24.73288 -23.12600 -22.85578 -21.08228 -19.91418 -19.88654 -19.14620 -18.77341 -18.09051 -17.60069 -17.15762 -17.11714 -16.83212 -16.48587 -16.11535 -15.70105 -15.38430 -15.16706 -14.81016 -14.62579 -14.38368 -14.25595 -13.98690 -13.92186 -13.78304 -13.71002 -13.62658 -13.56789 -13.29440 -13.22399 -13.13768 -13.05841 -12.82413 -12.73857 -12.54030 -12.36711 -12.24703 -12.04700 -11.98696 -11.85413 -11.77471 -11.74800 -11.65331 -10.83248 -10.63544 -9.93665 -9.37812 -9.33493 -8.34144 -6.38998 -0.74524 1.33189 1.36877 1.45598 1.62755 1.83161 2.29265 2.31269 2.88598 2.96809 3.00335 3.10766 3.48614 3.70358 3.83727 4.03740 4.04987 4.10916 4.17956 4.22758 4.34291 4.41521 4.45890 4.52853 4.59733 4.65415 4.68062 4.69722 4.82808 4.86375 4.87561 4.92108 4.92895 4.97781 5.01009 5.02800 5.05746 5.13372 5.18414 5.24355 5.43929 5.46177 5.63391 6.00601 6.13065 6.24007 6.62044 6.72663 7.21743 7.44355 8.82690 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.001870 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.170320 B =14968.526106 C =15183.926449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.222 3.778 4 C -0.535 4.535 5 H 0.028 0.972 6 C 0.009 3.991 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.238 1.238 12 C 0.497 3.503 13 O -0.597 6.597 14 C -0.118 4.118 15 C 0.081 3.919 16 N -0.534 5.534 17 C 0.010 3.990 18 C 0.071 3.929 19 H 0.065 0.935 20 C -0.123 4.123 21 C 0.116 3.884 22 N -1.016 6.016 23 S 2.631 3.369 24 C -0.649 4.649 25 O -0.993 6.993 26 O -0.993 6.993 27 C 0.128 3.872 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.022 0.978 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.073 0.927 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -28.528 8.206 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.341 5.341 3 C 0.099 3.901 4 C -0.573 4.573 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.161 1.161 12 C 0.286 3.714 13 O -0.479 6.479 14 C -0.158 4.158 15 C -0.048 4.048 16 N -0.258 5.258 17 C -0.138 4.138 18 C -0.038 4.038 19 H 0.083 0.917 20 C -0.163 4.163 21 C -0.009 4.009 22 N -0.854 5.854 23 S 2.730 3.270 24 C -0.803 4.803 25 O -0.984 6.984 26 O -0.984 6.984 27 C 0.002 3.998 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.165 0.835 48 H 0.091 0.909 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.681 -28.651 9.162 30.442 hybrid contribution 1.510 0.896 -1.233 2.146 sum -3.171 -27.755 7.928 29.038 Atomic orbital electron populations 1.21965 0.77573 1.03967 1.02940 1.47989 1.08496 1.06031 1.71546 1.19330 0.92757 0.82715 0.95257 1.21557 1.36710 1.06652 0.92412 0.95358 1.25879 0.95384 0.99013 0.98661 1.70047 1.42741 1.24491 1.21256 0.85693 0.79555 0.77713 0.79853 1.20171 1.20046 1.16144 1.21377 0.87818 0.86708 0.75524 1.90626 1.16529 1.88241 1.52467 1.21579 0.99031 0.88986 1.06200 1.21633 0.94254 0.87695 1.01169 1.62071 1.27049 1.00951 1.35771 1.22622 0.98261 1.03847 0.89033 1.22717 0.93701 0.89649 0.97768 0.91729 1.22838 1.01645 0.96006 0.95775 1.22145 0.89473 0.90666 0.98636 1.58429 1.47420 1.31876 1.47704 1.04059 0.74475 0.73764 0.74729 1.30362 1.16724 1.16332 1.16919 1.93555 1.85212 1.85987 1.33631 1.93561 1.33904 1.86274 1.84660 1.21755 0.98018 0.89884 0.90134 0.90284 0.91760 0.89119 0.93315 0.96341 0.92290 0.87544 0.86050 0.90610 0.95940 0.89475 0.90531 0.95413 0.89574 0.90542 0.90010 0.88928 0.83356 0.83674 0.83468 0.90906 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 10.24 127.77 1.31 3.45 16 2 N -0.61 -24.27 2.86 -851.13 -2.43 -26.70 16 3 C 0.22 10.78 4.23 85.63 0.36 11.15 16 4 C -0.53 -31.45 9.94 25.60 0.25 -31.20 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 6 C 0.01 0.50 5.47 84.66 0.46 0.97 16 7 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 8 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 12 C 0.50 19.38 7.67 87.66 0.67 20.06 16 13 O -0.60 -29.14 15.56 -3.03 -0.05 -29.18 16 14 C -0.12 -3.04 4.18 29.85 0.12 -2.92 16 15 C 0.08 2.02 4.15 86.30 0.36 2.37 16 16 N -0.53 -10.11 4.59 -890.04 -4.09 -14.20 16 17 C 0.01 0.16 9.05 127.69 1.16 1.32 16 18 C 0.07 1.13 2.64 46.10 0.12 1.25 16 19 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 20 C -0.12 -1.90 5.66 31.99 0.18 -1.72 16 21 C 0.12 1.42 7.07 86.86 0.61 2.03 16 22 N -1.02 -13.39 3.62 -506.43 -1.83 -15.22 16 23 S 2.63 35.83 6.29 -56.49 -0.36 35.48 16 24 C -0.65 -2.23 10.99 113.37 1.25 -0.99 16 25 O -0.99 -20.86 17.28 -127.65 -2.21 -23.07 16 26 O -0.99 -21.13 17.60 -127.65 -2.25 -23.38 16 27 C 0.13 1.74 5.42 86.73 0.47 2.21 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.92 8.07 -2.38 -0.02 1.90 16 30 H 0.09 1.95 6.44 -2.39 -0.02 1.93 16 31 H 0.05 2.17 7.13 -2.38 -0.02 2.16 16 32 H 0.02 0.96 6.85 -2.39 -0.02 0.95 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.11 2.39 5.73 -2.39 -0.01 2.38 16 35 H 0.12 2.53 8.11 -2.39 -0.02 2.51 16 36 H 0.08 2.01 6.89 -2.39 -0.02 2.00 16 37 H 0.02 0.66 8.08 -2.38 -0.02 0.64 16 38 H 0.09 1.11 6.64 -2.39 -0.02 1.10 16 39 H 0.08 1.20 6.30 -2.38 -0.02 1.18 16 40 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.09 1.29 7.89 -2.39 -0.02 1.27 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.09 7.67 -2.38 -0.02 1.07 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.07 1.21 7.30 -2.39 -0.02 1.19 16 49 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -88.78 399.45 -2.82 -91.60 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.87 Total: 9.80 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 7.33 Total: 7.97 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -8.06 Total: -115.54 kcal Atomic # 8 Polarization: -71.13 SS G_CDS: -4.50 Total: -75.63 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: 35.83 SS G_CDS: -0.36 Total: 35.48 kcal Total: -88.78 -2.82 -91.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315023583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.528 kcal (2) G-P(sol) polarization free energy of solvation -88.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds