Wall clock time and date at job start Wed Apr 1 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81396 * 109.47322 * 2 1 4 4 O 1.42101 * 110.54256 * 68.37929 * 3 2 1 5 5 O 1.42103 * 110.54410 * 291.62215 * 3 2 1 6 6 N 1.65604 * 104.44800 * 179.97438 * 3 2 1 7 7 C 1.46500 * 120.00320 * 269.99972 * 6 3 2 8 8 C 1.46509 * 119.99841 * 90.00430 * 6 3 2 9 9 C 1.53034 * 109.45952 * 119.99884 * 8 6 3 10 10 C 1.53192 * 109.31064 * 181.37146 * 9 8 6 11 11 N 1.46929 * 108.77583 * 305.36213 * 10 9 8 12 12 C 1.37340 * 120.63315 * 233.58698 * 11 10 9 13 13 O 1.35091 * 119.99863 * 174.92147 * 12 11 10 14 14 N 1.30093 * 119.99717 * 354.91530 * 12 11 10 15 15 C 1.46507 * 119.99887 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46675 * 115.00346 * 15 14 12 17 17 C 1.50701 * 109.47258 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00534 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00085 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99685 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47233 * 90.00041 * 21 19 17 23 23 H 1.48503 * 109.47038 * 210.00165 * 21 19 17 24 24 H 1.48501 * 109.47165 * 329.99563 * 21 19 17 25 25 C 1.46924 * 118.73482 * 53.85956 * 11 10 9 26 26 C 1.53036 * 109.44349 * 240.05909 * 8 6 3 27 27 H 1.08994 * 109.47053 * 300.00404 * 1 2 3 28 28 H 1.09003 * 109.46544 * 60.00001 * 1 2 3 29 29 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47255 * 239.99871 * 2 1 3 31 31 H 1.09005 * 109.47055 * 120.00076 * 2 1 3 32 32 H 1.08998 * 109.46860 * 270.00320 * 7 6 3 33 33 H 1.08998 * 109.46708 * 30.00105 * 7 6 3 34 34 H 1.08994 * 109.47279 * 150.00043 * 7 6 3 35 35 H 1.08998 * 109.45770 * 0.02562 * 8 6 3 36 36 H 1.09000 * 109.50408 * 61.42024 * 9 8 6 37 37 H 1.08998 * 109.49887 * 301.32157 * 9 8 6 38 38 H 1.08998 * 109.58688 * 185.57562 * 10 9 8 39 39 H 1.08998 * 109.70398 * 65.21866 * 10 9 8 40 40 H 0.96697 * 114.00124 * 5.22450 * 13 12 11 41 41 H 1.08994 * 109.47405 * 235.00267 * 15 14 12 42 42 H 1.08998 * 109.47136 * 355.00836 * 15 14 12 43 43 H 1.09001 * 109.47479 * 300.00110 * 16 15 14 44 44 H 1.08999 * 109.47403 * 60.00113 * 16 15 14 45 45 H 0.96999 * 119.99930 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.58741 * 65.93195 * 25 11 10 47 47 H 1.09003 * 109.58820 * 186.35369 * 25 11 10 48 48 H 1.08998 * 109.49975 * 298.56862 * 26 8 6 49 49 H 1.09001 * 109.50301 * 58.66938 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 7 3.7844 1.5651 0.0007 7 6 4.5136 1.5012 1.2697 8 6 4.5146 1.5009 -1.2678 9 6 5.5004 2.6686 -1.3483 10 6 6.2375 2.6178 -2.6903 11 7 6.8569 1.2939 -2.8398 12 6 8.1974 1.1753 -3.1143 13 8 8.7746 -0.0456 -3.1477 14 7 8.9111 2.2388 -3.3423 15 6 10.3411 2.1125 -3.6347 16 6 10.6124 2.5814 -5.0655 17 6 12.0833 2.4509 -5.3666 18 1 12.7571 2.0711 -4.6128 19 6 12.5688 2.8164 -6.6042 20 7 13.8523 2.7020 -6.8670 21 14 11.4035 3.4741 -7.9076 22 1 11.3066 4.9509 -7.7852 23 1 11.9185 3.1218 -9.2552 24 1 10.0591 2.8723 -7.7187 25 6 6.0137 0.0993 -2.6960 26 6 5.2802 0.1782 -1.3484 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.7844 2.5090 1.5843 33 1 3.8815 1.0410 2.0291 34 1 5.4174 0.9059 1.1398 35 1 3.8092 1.5633 -2.0964 36 1 6.2213 2.5931 -0.5342 37 1 4.9568 3.6099 -1.2672 38 1 7.0095 3.3870 -2.7125 39 1 5.5316 2.7849 -3.5038 40 1 8.1517 -0.7781 -3.0455 41 1 10.9103 2.7267 -2.9370 42 1 10.6425 1.0702 -3.5306 43 1 10.0432 1.9672 -5.7633 44 1 10.3110 3.6237 -5.1696 45 1 14.1939 2.9595 -7.7375 46 1 5.2881 0.0642 -3.5086 47 1 6.6380 -0.7939 -2.7220 48 1 6.0032 0.1261 -0.5344 49 1 4.5799 -0.6531 -1.2675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330840494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:18 Heat of formation + Delta-G solvation = -79.314215 kcal Electronic energy + Delta-G solvation = -29319.515332 eV Core-core repulsion = 25216.840087 eV Total energy + Delta-G solvation = -4102.675246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.14328 -38.35962 -37.59430 -36.40732 -35.73716 -34.58353 -33.74311 -32.71971 -31.58167 -31.38279 -29.46144 -27.19341 -25.35202 -24.66198 -23.71209 -23.46728 -21.21167 -20.15056 -19.91381 -19.35319 -18.48179 -18.27073 -16.99546 -16.85331 -16.69662 -15.77547 -15.56426 -15.25240 -14.79382 -14.70420 -14.62481 -14.38058 -14.04028 -13.83911 -13.62326 -13.58351 -13.34856 -13.12031 -13.07528 -13.01024 -12.62962 -12.58101 -12.52732 -12.41064 -12.28626 -12.17566 -11.80611 -11.63972 -11.55354 -11.36125 -11.12446 -11.03031 -10.82316 -10.37897 -10.18378 -9.68101 -9.56142 -9.48241 -9.15222 -8.68568 -8.42621 -7.55398 -5.95442 -3.92280 -0.28410 2.09190 2.73662 3.09802 3.33925 3.39521 3.45317 3.52876 3.57928 3.90286 3.98181 4.12586 4.15205 4.30618 4.45616 4.54586 4.55044 4.57910 4.78691 4.85210 4.93897 4.99964 5.02496 5.08052 5.08375 5.17923 5.30016 5.31725 5.37950 5.39517 5.44711 5.53060 5.68199 5.73147 5.88617 6.05024 6.07094 6.51665 6.54623 6.69954 6.89879 7.00158 7.48447 7.58396 7.88651 8.09304 8.63189 8.75107 9.09604 9.67921 11.18037 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002027 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.768497 B =13811.189924 C =13996.390661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.634 4.634 3 S 2.604 3.396 4 O -0.952 6.952 5 O -0.950 6.950 6 N -0.998 5.998 7 C 0.092 3.908 8 C 0.147 3.853 9 C -0.140 4.140 10 C 0.139 3.861 11 N -0.629 5.629 12 C 0.537 3.463 13 O -0.505 6.505 14 N -0.589 5.589 15 C 0.085 3.915 16 C -0.002 4.002 17 C -0.516 4.516 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.266 1.266 25 C 0.120 3.880 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.381 0.619 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.010 0.990 44 H 0.016 0.984 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.096 -10.110 17.719 36.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.763 4.763 3 S 2.697 3.303 4 O -0.943 6.943 5 O -0.940 6.940 6 N -0.835 5.835 7 C -0.053 4.053 8 C 0.041 3.959 9 C -0.180 4.180 10 C 0.016 3.984 11 N -0.361 5.361 12 C 0.225 3.775 13 O -0.300 6.300 14 N -0.335 5.335 15 C -0.044 4.044 16 C -0.041 4.041 17 C -0.555 4.555 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.005 4.005 26 C -0.187 4.187 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.911 -8.248 17.482 35.613 hybrid contribution -0.377 -1.720 -0.635 1.872 sum -30.288 -9.968 16.848 36.063 Atomic orbital electron populations 1.21512 0.90461 1.05161 1.03549 1.30579 1.07296 1.26838 1.11547 1.05349 0.73029 0.77534 0.74404 1.93606 1.83158 1.72291 1.45207 1.93613 1.83046 1.72253 1.45079 1.57586 1.24387 1.89644 1.11888 1.21457 0.97778 1.02831 0.83244 1.20983 0.94712 0.95444 0.84751 1.22301 0.98166 0.98288 0.99260 1.21436 0.97574 0.84347 0.95020 1.46405 1.04261 1.06712 1.78713 1.20724 0.84092 0.81745 0.90956 1.85359 1.38768 1.15604 1.90226 1.72594 1.10858 1.20588 1.29462 1.21649 0.84153 0.99727 0.98879 1.19528 0.96871 0.96149 0.91503 1.21129 0.91661 1.42958 0.99725 0.91091 1.25000 0.94951 0.95261 0.98321 1.69919 1.12747 1.49126 1.22768 0.86733 0.81845 0.79646 0.80785 1.20247 1.21565 1.19117 1.21530 0.93933 0.88017 0.96974 1.22452 1.00174 0.97523 0.98521 0.90954 0.90857 0.89935 0.85035 0.85137 0.91957 0.91232 0.90660 0.87819 0.90739 0.90073 0.87258 0.91818 0.76379 0.91725 0.93968 0.97208 0.96551 0.92858 0.90770 0.90431 0.90311 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.92 37.16 0.37 -0.19 16 2 C -0.63 -2.17 6.90 37.16 0.26 -1.91 16 3 S 2.60 18.44 5.37 -107.50 -0.58 17.86 16 4 O -0.95 -9.73 17.09 -57.54 -0.98 -10.71 16 5 O -0.95 -9.79 16.57 -57.54 -0.95 -10.74 16 6 N -1.00 -6.03 3.00 -114.57 -0.34 -6.38 16 7 C 0.09 0.46 9.28 59.85 0.56 1.02 16 8 C 0.15 0.96 2.42 -67.89 -0.16 0.79 16 9 C -0.14 -1.17 5.34 -26.61 -0.14 -1.31 16 10 C 0.14 1.49 6.43 -3.71 -0.02 1.46 16 11 N -0.63 -6.89 3.04 -175.10 -0.53 -7.42 16 12 C 0.54 8.41 8.54 -88.57 -0.76 7.65 16 13 O -0.51 -7.36 11.99 -16.98 -0.20 -7.56 16 14 N -0.59 -11.66 9.15 -62.53 -0.57 -12.23 16 15 C 0.08 1.96 6.27 -4.04 -0.03 1.93 16 16 C 0.00 -0.07 4.36 -27.88 -0.12 -0.19 16 17 C -0.52 -15.67 9.66 -34.44 -0.33 -16.00 16 18 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.91 -28.97 13.96 55.43 0.77 -28.20 16 21 Si 0.88 23.05 27.47 -169.99 -4.67 18.38 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.27 -6.83 6.54 56.52 0.37 -6.46 16 25 C 0.12 0.76 6.46 -3.49 -0.02 0.73 16 26 C -0.15 -0.70 5.33 -26.39 -0.14 -0.84 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.25 7.79 -51.93 -0.40 -0.15 16 34 H 0.07 0.29 6.46 -51.93 -0.34 -0.04 16 35 H 0.10 0.69 6.87 -51.93 -0.36 0.33 16 36 H 0.07 0.65 7.72 -51.93 -0.40 0.25 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.45 6.95 -51.93 -0.36 1.08 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.38 3.25 6.13 45.56 0.28 3.53 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.04 0.99 6.74 -51.93 -0.35 0.64 16 43 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 44 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 47 H 0.08 0.34 5.51 -51.93 -0.29 0.06 16 48 H 0.08 0.41 6.72 -51.93 -0.35 0.06 16 49 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -40.49 396.29 -10.30 -50.79 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -7.57 Total: -4.80 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.65 Total: -4.95 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.67 Total: -54.23 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -2.14 Total: -29.02 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.67 Total: 18.38 kcal Atomic # 16 Polarization: 18.44 SS G_CDS: -0.58 Total: 17.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.49 -10.30 -50.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330840494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.525 kcal (2) G-P(sol) polarization free energy of solvation -40.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds