Wall clock time and date at job start Wed Apr 1 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81396 * 109.47322 * 2 1 4 4 O 1.42101 * 110.54256 * 68.37929 * 3 2 1 5 5 O 1.42103 * 110.54410 * 291.62215 * 3 2 1 6 6 N 1.65604 * 104.44800 * 179.97438 * 3 2 1 7 7 C 1.46500 * 120.00320 * 269.99972 * 6 3 2 8 8 C 1.46509 * 119.99841 * 90.00430 * 6 3 2 9 9 C 1.53034 * 109.45952 * 119.99884 * 8 6 3 10 10 C 1.53192 * 109.31064 * 181.37146 * 9 8 6 11 11 N 1.46929 * 108.77583 * 305.36213 * 10 9 8 12 12 C 1.37340 * 120.63315 * 233.58698 * 11 10 9 13 13 O 1.35091 * 119.99863 * 174.92147 * 12 11 10 14 14 N 1.30093 * 119.99717 * 354.91530 * 12 11 10 15 15 C 1.46507 * 119.99887 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46675 * 115.00346 * 15 14 12 17 17 C 1.50701 * 109.47258 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00534 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00085 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99685 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47233 * 90.00041 * 21 19 17 23 23 H 1.48503 * 109.47038 * 210.00165 * 21 19 17 24 24 H 1.48501 * 109.47165 * 329.99563 * 21 19 17 25 25 C 1.46924 * 118.73482 * 53.85956 * 11 10 9 26 26 C 1.53036 * 109.44349 * 240.05909 * 8 6 3 27 27 H 1.08994 * 109.47053 * 300.00404 * 1 2 3 28 28 H 1.09003 * 109.46544 * 60.00001 * 1 2 3 29 29 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47255 * 239.99871 * 2 1 3 31 31 H 1.09005 * 109.47055 * 120.00076 * 2 1 3 32 32 H 1.08998 * 109.46860 * 270.00320 * 7 6 3 33 33 H 1.08998 * 109.46708 * 30.00105 * 7 6 3 34 34 H 1.08994 * 109.47279 * 150.00043 * 7 6 3 35 35 H 1.08998 * 109.45770 * 0.02562 * 8 6 3 36 36 H 1.09000 * 109.50408 * 61.42024 * 9 8 6 37 37 H 1.08998 * 109.49887 * 301.32157 * 9 8 6 38 38 H 1.08998 * 109.58688 * 185.57562 * 10 9 8 39 39 H 1.08998 * 109.70398 * 65.21866 * 10 9 8 40 40 H 0.96697 * 114.00124 * 5.22450 * 13 12 11 41 41 H 1.08994 * 109.47405 * 235.00267 * 15 14 12 42 42 H 1.08998 * 109.47136 * 355.00836 * 15 14 12 43 43 H 1.09001 * 109.47479 * 300.00110 * 16 15 14 44 44 H 1.08999 * 109.47403 * 60.00113 * 16 15 14 45 45 H 0.96999 * 119.99930 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.58741 * 65.93195 * 25 11 10 47 47 H 1.09003 * 109.58820 * 186.35369 * 25 11 10 48 48 H 1.08998 * 109.49975 * 298.56862 * 26 8 6 49 49 H 1.09001 * 109.50301 * 58.66938 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 7 3.7844 1.5651 0.0007 7 6 4.5136 1.5012 1.2697 8 6 4.5146 1.5009 -1.2678 9 6 5.5004 2.6686 -1.3483 10 6 6.2375 2.6178 -2.6903 11 7 6.8569 1.2939 -2.8398 12 6 8.1974 1.1753 -3.1143 13 8 8.7746 -0.0456 -3.1477 14 7 8.9111 2.2388 -3.3423 15 6 10.3411 2.1125 -3.6347 16 6 10.6124 2.5814 -5.0655 17 6 12.0833 2.4509 -5.3666 18 1 12.7571 2.0711 -4.6128 19 6 12.5688 2.8164 -6.6042 20 7 13.8523 2.7020 -6.8670 21 14 11.4035 3.4741 -7.9076 22 1 11.3066 4.9509 -7.7852 23 1 11.9185 3.1218 -9.2552 24 1 10.0591 2.8723 -7.7187 25 6 6.0137 0.0993 -2.6960 26 6 5.2802 0.1782 -1.3484 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.7844 2.5090 1.5843 33 1 3.8815 1.0410 2.0291 34 1 5.4174 0.9059 1.1398 35 1 3.8092 1.5633 -2.0964 36 1 6.2213 2.5931 -0.5342 37 1 4.9568 3.6099 -1.2672 38 1 7.0095 3.3870 -2.7125 39 1 5.5316 2.7849 -3.5038 40 1 8.1517 -0.7781 -3.0455 41 1 10.9103 2.7267 -2.9370 42 1 10.6425 1.0702 -3.5306 43 1 10.0432 1.9672 -5.7633 44 1 10.3110 3.6237 -5.1696 45 1 14.1939 2.9595 -7.7375 46 1 5.2881 0.0642 -3.5086 47 1 6.6380 -0.7939 -2.7220 48 1 6.0032 0.1261 -0.5344 49 1 4.5799 -0.6531 -1.2675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330840494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:16 Heat of formation + Delta-G solvation = -113.781331 kcal Electronic energy + Delta-G solvation = -29321.009939 eV Core-core repulsion = 25216.840087 eV Total energy + Delta-G solvation = -4104.169852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.05483 -39.21497 -38.22378 -37.04376 -36.48344 -36.31099 -34.64452 -34.01421 -32.72284 -32.07943 -31.07214 -27.79114 -26.76785 -25.25416 -24.53974 -24.23534 -22.61009 -21.59194 -20.87127 -19.91411 -19.42154 -18.97048 -18.78301 -17.48839 -17.26901 -16.99930 -16.43592 -16.12567 -15.99821 -15.63352 -15.29923 -15.18021 -15.10837 -14.98692 -14.78260 -14.40047 -14.27124 -14.19428 -14.02406 -13.58968 -13.52572 -13.40395 -13.25552 -13.17010 -13.05243 -13.02709 -12.99181 -12.40602 -12.37403 -12.34915 -12.22032 -12.08586 -11.91032 -11.77772 -11.57541 -11.46945 -11.32484 -10.79608 -10.76218 -10.23571 -9.92506 -8.78465 -8.31497 -6.35505 -0.76653 1.33196 1.34954 1.48668 1.60658 1.76834 1.83961 2.35102 2.88900 3.02693 3.07278 3.11868 3.51560 3.70689 3.77642 3.87921 3.98544 4.00389 4.12929 4.20074 4.35869 4.38304 4.43225 4.52315 4.64120 4.65600 4.68666 4.71215 4.77248 4.83852 4.90132 4.95147 5.00519 5.02874 5.03885 5.09321 5.12449 5.17480 5.35721 5.45514 5.50463 5.59215 5.61225 5.70935 5.95802 6.26511 6.70105 7.04781 7.27845 7.43220 8.85151 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002027 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.768497 B =13811.189924 C =13996.390661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.605 4.605 3 S 2.597 3.403 4 O -0.994 6.994 5 O -0.991 6.991 6 N -0.996 5.996 7 C 0.086 3.914 8 C 0.146 3.854 9 C -0.134 4.134 10 C 0.137 3.863 11 N -0.617 5.617 12 C 0.557 3.443 13 O -0.517 6.517 14 N -0.635 5.635 15 C 0.102 3.898 16 C 0.008 3.992 17 C -0.533 4.533 18 H 0.033 0.967 19 C 0.007 3.993 20 N -0.947 5.947 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.108 3.892 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.407 0.593 41 H 0.048 0.952 42 H 0.029 0.971 43 H 0.005 0.995 44 H 0.013 0.987 45 H 0.268 0.732 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.244 -12.704 17.659 39.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.738 4.738 3 S 2.696 3.304 4 O -0.985 6.985 5 O -0.982 6.982 6 N -0.833 5.833 7 C -0.059 4.059 8 C 0.040 3.960 9 C -0.175 4.175 10 C 0.014 3.986 11 N -0.349 5.349 12 C 0.244 3.756 13 O -0.315 6.315 14 N -0.385 5.385 15 C -0.028 4.028 16 C -0.030 4.030 17 C -0.571 4.571 18 H 0.051 0.949 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.182 1.182 25 C -0.014 4.014 26 C -0.178 4.178 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.023 0.977 44 H 0.031 0.969 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.097 0.903 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -33.110 -10.850 17.460 38.973 hybrid contribution 0.499 -1.073 -0.500 1.285 sum -32.611 -11.923 16.960 38.643 Atomic orbital electron populations 1.21702 0.90659 1.06466 1.03427 1.30336 1.06931 1.22225 1.14314 1.05288 0.73098 0.79243 0.72762 1.93550 1.83742 1.74748 1.46454 1.93556 1.83644 1.74698 1.46284 1.57373 1.23929 1.89967 1.11981 1.21590 0.98715 1.02376 0.83215 1.20981 0.94382 0.95524 0.85096 1.22207 0.98331 0.99318 0.97597 1.21421 0.96867 0.83669 0.96665 1.46693 1.02740 1.08606 1.76827 1.20821 0.85257 0.81462 0.88021 1.85315 1.40300 1.16174 1.89756 1.72553 1.08607 1.22624 1.34728 1.21172 0.87090 0.98205 0.96288 1.19365 0.93953 0.95779 0.93862 1.21406 0.93370 1.43056 0.99314 0.94890 1.25976 0.96833 0.95361 1.00866 1.70054 1.14817 1.50079 1.23836 0.85589 0.79510 0.79362 0.77690 1.19041 1.20146 1.18174 1.22022 0.94085 0.86638 0.98697 1.22432 1.00498 0.97496 0.97341 0.91263 0.91187 0.87759 0.82266 0.82461 0.93683 0.89623 0.89117 0.87652 0.91264 0.90884 0.90308 0.90942 0.73295 0.93340 0.95210 0.97711 0.96909 0.92310 0.88890 0.87975 0.90268 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.92 71.98 0.71 0.00 16 2 C -0.60 -1.63 6.90 71.98 0.50 -1.13 16 3 S 2.60 32.78 5.37 -56.49 -0.30 32.48 16 4 O -0.99 -20.01 17.09 -127.65 -2.18 -22.19 16 5 O -0.99 -19.82 16.57 -127.65 -2.12 -21.93 16 6 N -1.00 -9.90 3.00 -516.39 -1.55 -11.45 16 7 C 0.09 0.70 9.28 127.77 1.19 1.89 16 8 C 0.15 1.53 2.42 45.01 0.11 1.64 16 9 C -0.13 -2.15 5.34 30.67 0.16 -1.99 16 10 C 0.14 2.83 6.43 86.36 0.56 3.38 16 11 N -0.62 -12.22 3.04 -818.35 -2.49 -14.70 16 12 C 0.56 16.76 8.54 179.63 1.53 18.29 16 13 O -0.52 -14.08 11.99 -83.66 -1.00 -15.09 16 14 N -0.64 -25.48 9.15 -465.99 -4.26 -29.74 16 15 C 0.10 4.91 6.27 86.38 0.54 5.45 16 16 C 0.01 0.46 4.36 29.85 0.13 0.59 16 17 C -0.53 -33.53 9.66 25.60 0.25 -33.28 16 18 H 0.03 2.25 7.99 -2.91 -0.02 2.22 16 19 C 0.01 0.41 5.47 84.66 0.46 0.88 16 20 N -0.95 -61.85 13.96 21.45 0.30 -61.55 16 21 Si 0.96 47.74 27.47 68.60 1.88 49.62 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 25 C 0.11 0.90 6.46 86.51 0.56 1.45 16 26 C -0.14 -0.69 5.33 30.82 0.16 -0.53 16 27 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.04 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.42 7.79 -2.39 -0.02 0.40 16 34 H 0.09 0.45 6.46 -2.39 -0.02 0.44 16 35 H 0.11 1.11 6.87 -2.39 -0.02 1.10 16 36 H 0.07 1.17 7.72 -2.39 -0.02 1.16 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 2.16 6.95 -2.39 -0.02 2.14 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 5.48 6.13 -74.06 -0.45 5.02 16 41 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.03 1.44 6.74 -2.39 -0.02 1.42 16 43 H 0.00 0.25 7.20 -2.39 -0.02 0.23 16 44 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 45 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 46 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.10 0.36 5.51 -2.39 -0.01 0.35 16 48 H 0.08 0.46 6.72 -2.39 -0.02 0.45 16 49 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -92.89 396.29 -4.42 -97.30 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 0.44 Total: 0.62 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 6.86 Total: -3.37 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -8.00 Total: -117.44 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -5.30 Total: -59.21 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.62 kcal Atomic # 16 Polarization: 32.78 SS G_CDS: -0.30 Total: 32.48 kcal Total: -92.89 -4.42 -97.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330840494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.477 kcal (2) G-P(sol) polarization free energy of solvation -92.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds