Wall clock time and date at job start Wed Apr 1 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81405 * 109.47306 * 2 1 4 4 O 1.42098 * 110.54056 * 68.37506 * 3 2 1 5 5 O 1.42099 * 110.53865 * 291.62503 * 3 2 1 6 6 N 1.65594 * 104.44837 * 179.97438 * 3 2 1 7 7 C 1.46494 * 120.00088 * 269.99504 * 6 3 2 8 8 C 1.46505 * 120.00109 * 90.00538 * 6 3 2 9 9 C 1.50695 * 109.47395 * 94.99470 * 8 6 3 10 10 O 1.21283 * 120.00244 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99913 * 180.02562 * 9 8 6 12 12 C 1.46506 * 120.00150 * 179.97438 * 11 9 8 13 13 C 1.52989 * 109.47243 * 180.02562 * 12 11 9 14 14 C 1.53349 * 109.42090 * 295.12458 * 13 12 11 15 15 C 1.53189 * 109.15350 * 178.67324 * 14 13 12 16 16 N 1.46931 * 108.89061 * 54.57922 * 15 14 13 17 17 C 1.36938 * 120.62972 * 126.29441 * 16 15 14 18 18 H 1.08005 * 120.00173 * 331.83979 * 17 16 15 19 19 C 1.38813 * 119.99936 * 151.83343 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08512 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08402 * 19 17 16 22 22 H 1.48500 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46793 * 120.00276 * 21 19 17 24 24 H 1.48498 * 109.46814 * 240.00176 * 21 19 17 25 25 C 1.46927 * 118.74004 * 306.32424 * 16 15 14 26 26 C 1.53047 * 109.46104 * 175.00010 * 13 12 11 27 27 H 1.09000 * 109.47531 * 60.00168 * 1 2 3 28 28 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47423 * 300.00186 * 1 2 3 30 30 H 1.09001 * 109.47423 * 239.99814 * 2 1 3 31 31 H 1.09007 * 109.47177 * 119.99979 * 2 1 3 32 32 H 1.09000 * 109.47864 * 270.00656 * 7 6 3 33 33 H 1.09007 * 109.47030 * 30.00744 * 7 6 3 34 34 H 1.09002 * 109.47122 * 150.00360 * 7 6 3 35 35 H 1.09004 * 109.46681 * 334.99557 * 8 6 3 36 36 H 1.09000 * 109.46964 * 214.99903 * 8 6 3 37 37 H 0.97003 * 120.00078 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.46657 * 59.99515 * 12 11 9 39 39 H 1.09008 * 109.46786 * 300.00364 * 12 11 9 40 40 H 1.08997 * 109.46256 * 55.02918 * 13 12 11 41 41 H 1.09001 * 109.68292 * 58.70967 * 14 13 12 42 42 H 1.08994 * 109.47524 * 298.51791 * 14 13 12 43 43 H 1.09000 * 109.58714 * 294.72587 * 15 14 13 44 44 H 1.09003 * 109.58688 * 174.43867 * 15 14 13 45 45 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58255 * 173.39566 * 25 16 15 47 47 H 1.09000 * 109.58150 * 293.67300 * 25 16 15 48 48 H 1.09000 * 109.49464 * 61.43304 * 26 13 12 49 49 H 1.08999 * 109.52117 * 301.35057 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.5134 1.5014 1.2697 8 6 4.5145 1.5010 -1.2677 9 6 4.9956 2.8795 -1.6408 10 8 4.7521 3.8230 -0.9186 11 7 5.6956 3.0642 -2.7776 12 6 6.1629 4.4045 -3.1406 13 6 6.9245 4.3375 -4.4658 14 6 8.1942 3.4975 -4.2823 15 6 8.9347 3.4068 -5.6203 16 7 9.1759 4.7660 -6.1235 17 6 10.4389 5.1692 -6.4661 18 1 11.2970 4.7265 -5.9822 19 6 10.6164 6.1469 -7.4354 20 7 9.6308 6.4486 -8.2540 21 14 12.2540 7.0343 -7.5781 22 1 13.1900 6.5144 -6.5491 23 1 12.8260 6.8034 -8.9289 24 1 12.0478 8.4901 -7.3701 25 6 8.0363 5.6845 -6.2517 26 6 7.3044 5.7527 -4.9077 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.7842 2.5092 1.5844 33 1 3.8813 1.0412 2.0292 34 1 5.4173 0.9061 1.1398 35 1 3.8543 1.1230 -2.0483 36 1 5.3701 0.8341 -1.1610 37 1 5.8895 2.3098 -3.3558 38 1 6.8232 4.7827 -2.3603 39 1 5.3070 5.0711 -3.2471 40 1 6.2922 3.8775 -5.2252 41 1 7.9264 2.4958 -3.9461 42 1 8.8386 3.9702 -3.5411 43 1 8.3274 2.8541 -6.3372 44 1 9.8868 2.8958 -5.4771 45 1 9.7547 7.1320 -8.9310 46 1 8.3958 6.6771 -6.5228 47 1 7.3572 5.3189 -7.0219 48 1 7.9570 6.2041 -4.1605 49 1 6.4025 6.3553 -5.0148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330930648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:17 Heat of formation + Delta-G solvation = -117.760800 kcal Electronic energy + Delta-G solvation = -29106.371211 eV Core-core repulsion = 25002.028797 eV Total energy + Delta-G solvation = -4104.342415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.86058 -39.36091 -38.24847 -37.11652 -36.85729 -36.21500 -34.46882 -34.02710 -32.58167 -31.43130 -30.02370 -28.16679 -26.42348 -25.44746 -24.68537 -23.80519 -22.66021 -21.65849 -20.69644 -19.88365 -18.86753 -18.69674 -18.26764 -17.60119 -17.25861 -16.88929 -16.66012 -16.33550 -15.75264 -15.62033 -15.29807 -15.19801 -15.06641 -14.95997 -14.75969 -14.19805 -14.04342 -13.98969 -13.90986 -13.77521 -13.45993 -13.41528 -13.26614 -13.20570 -13.00954 -12.81600 -12.60250 -12.58329 -12.48271 -12.39464 -12.23320 -11.99004 -11.83729 -11.61567 -11.57373 -11.33022 -11.12704 -11.07284 -10.53929 -10.04510 -9.96551 -8.65815 -7.86716 -5.31511 -0.81805 1.45100 1.47591 1.57211 1.57511 1.68822 2.28880 2.51447 2.95151 3.10028 3.27877 3.56870 3.72818 3.77052 3.85583 3.90594 3.91964 3.98444 4.11297 4.28651 4.38734 4.47733 4.53269 4.55963 4.65407 4.71438 4.72144 4.74287 4.82738 4.83777 4.93409 4.95008 5.04436 5.06230 5.12435 5.16910 5.30272 5.31560 5.41237 5.43547 5.49936 5.57228 5.67073 5.79714 6.40927 6.63457 7.16458 7.32926 7.89393 8.39933 9.19540 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.001866 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.290390 B =15001.075326 C =15122.830197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.594 4.594 3 S 2.589 3.411 4 O -0.998 6.998 5 O -0.995 6.995 6 N -0.988 5.988 7 C 0.089 3.911 8 C 0.104 3.896 9 C 0.481 3.519 10 O -0.587 6.587 11 N -0.713 5.713 12 C 0.136 3.864 13 C -0.077 4.077 14 C -0.112 4.112 15 C 0.139 3.861 16 N -0.613 5.613 17 C -0.258 4.258 18 H 0.066 0.934 19 C -0.054 4.054 20 N -0.935 5.935 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.178 3.822 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.028 0.972 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.418 0.582 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.020 0.980 44 H 0.053 0.947 45 H 0.249 0.751 46 H 0.049 0.951 47 H -0.001 1.001 48 H 0.048 0.952 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -21.778 18.234 32.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.728 4.728 3 S 2.687 3.313 4 O -0.988 6.988 5 O -0.985 6.985 6 N -0.824 5.824 7 C -0.056 4.056 8 C -0.025 4.025 9 C 0.267 3.733 10 O -0.467 6.467 11 N -0.367 5.367 12 C 0.011 3.989 13 C -0.096 4.096 14 C -0.151 4.151 15 C 0.014 3.986 16 N -0.336 5.336 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.052 3.948 26 C -0.163 4.163 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.256 0.744 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.017 0.983 48 H 0.067 0.933 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.095 -20.177 18.654 31.846 hybrid contribution 1.107 0.560 -0.852 1.505 sum -14.988 -19.616 17.803 30.437 Atomic orbital electron populations 1.21733 0.90532 1.06723 1.03436 1.30270 1.06917 1.20774 1.14863 1.05632 0.73184 0.79641 0.72822 1.93529 1.83639 1.75018 1.46648 1.93556 1.83580 1.74936 1.46423 1.57014 1.24196 1.89580 1.11651 1.21666 0.98965 1.01838 0.83130 1.21519 1.01651 0.92800 0.86551 1.22169 0.77278 0.93278 0.80532 1.90698 1.58010 1.45162 1.52823 1.45925 1.55662 1.11102 1.24019 1.21197 0.97216 0.84403 0.96034 1.21194 0.96541 0.96456 0.95416 1.21981 0.95611 1.00047 0.97445 1.21101 0.98009 0.85825 0.93701 1.44342 1.04304 1.09267 1.75729 1.19542 0.85303 1.19546 1.14500 0.91614 1.25793 1.00542 1.02894 0.95683 1.70183 1.33785 1.34273 1.19947 0.85253 0.80111 0.78073 0.77301 1.19056 1.21871 1.21962 1.20543 0.87469 0.94630 0.92144 1.21984 0.99399 0.96470 0.98493 0.91271 0.87143 0.91353 0.81622 0.81944 0.95290 0.89164 0.87516 0.84409 0.82112 0.74418 0.92818 0.93214 0.90358 0.88872 0.93285 0.96193 0.92841 0.94209 0.93270 0.98286 0.93322 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.92 71.98 0.71 -0.37 16 2 C -0.59 -2.90 6.90 71.98 0.50 -2.40 16 3 S 2.59 46.70 5.32 -56.49 -0.30 46.40 16 4 O -1.00 -26.47 17.08 -127.65 -2.18 -28.65 16 5 O -0.99 -26.34 16.99 -127.65 -2.17 -28.51 16 6 N -0.99 -14.51 2.61 -543.22 -1.42 -15.92 16 7 C 0.09 1.08 10.22 127.77 1.31 2.39 16 8 C 0.10 1.20 5.76 85.63 0.49 1.69 16 9 C 0.48 11.39 7.89 87.66 0.69 12.08 16 10 O -0.59 -20.69 16.42 -3.04 -0.05 -20.74 16 11 N -0.71 -14.84 5.27 -463.06 -2.44 -17.28 16 12 C 0.14 3.74 5.06 86.37 0.44 4.18 16 13 C -0.08 -2.28 2.19 -10.66 -0.02 -2.30 16 14 C -0.11 -3.24 5.27 30.77 0.16 -3.08 16 15 C 0.14 5.31 6.50 86.36 0.56 5.87 16 16 N -0.61 -30.27 2.99 -699.08 -2.09 -32.36 16 17 C -0.26 -14.18 9.58 84.03 0.81 -13.38 16 18 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 19 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 20 N -0.94 -55.79 11.20 21.65 0.24 -55.55 16 21 Si 0.96 45.23 29.59 68.60 2.03 47.26 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 C 0.18 8.57 5.30 86.36 0.46 9.03 16 26 C -0.12 -4.63 5.36 30.67 0.16 -4.47 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.17 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.16 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.72 7.79 -2.38 -0.02 0.70 16 34 H 0.11 0.54 7.94 -2.39 -0.02 0.52 16 35 H 0.14 0.85 7.61 -2.39 -0.02 0.83 16 36 H 0.16 0.29 7.96 -2.39 -0.02 0.27 16 37 H 0.42 5.53 7.65 -92.71 -0.71 4.82 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 1.89 7.16 -2.39 -0.02 1.87 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 45 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 47 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -90.54 403.98 -1.47 -92.01 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.22 Total: 6.71 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.68 Total: 6.62 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.71 Total: -121.11 kcal Atomic # 8 Polarization: -73.49 SS G_CDS: -4.40 Total: -77.89 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 46.70 SS G_CDS: -0.30 Total: 46.40 kcal Total: -90.54 -1.47 -92.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330930648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.749 kcal (2) G-P(sol) polarization free energy of solvation -90.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds