Wall clock time and date at job start Wed Apr 1 2020 04:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1 5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2 6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99969 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47518 * 59.99146 * 9 7 5 11 11 H 1.48497 * 109.47319 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46987 * 299.99449 * 9 7 5 13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1 14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2 15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2 16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2 17 17 C 1.46923 * 120.62553 * 269.71749 * 16 13 3 18 18 C 1.52760 * 109.00861 * 233.58205 * 17 16 13 19 19 C 1.53046 * 109.38256 * 305.58983 * 18 17 16 20 20 C 1.52996 * 109.44823 * 181.25114 * 19 18 17 21 21 C 1.53002 * 109.47337 * 64.94039 * 20 19 18 22 22 C 1.50698 * 109.47522 * 179.97438 * 21 20 19 23 23 N 1.34775 * 119.99757 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99981 * 359.97438 * 22 21 20 25 25 C 1.53042 * 109.53591 * 61.23964 * 19 18 17 26 26 C 1.46921 * 120.63289 * 89.99671 * 16 13 3 27 27 H 1.09000 * 109.46418 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46892 * 299.99940 * 1 2 3 29 29 H 1.08992 * 109.47062 * 60.00677 * 1 2 3 30 30 H 1.09001 * 109.46917 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46995 * 119.99496 * 2 1 3 32 32 H 1.08996 * 109.47764 * 34.99918 * 4 3 2 33 33 H 1.09003 * 109.47361 * 155.00291 * 4 3 2 34 34 H 0.96993 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.59343 * 353.42265 * 17 16 13 36 36 H 1.09010 * 109.58634 * 113.84364 * 17 16 13 37 37 H 1.09006 * 109.56563 * 185.55777 * 18 17 16 38 38 H 1.09001 * 109.35973 * 65.50306 * 18 17 16 39 39 H 1.08998 * 109.46354 * 301.21868 * 19 18 17 40 40 H 1.08999 * 109.47426 * 184.93860 * 20 19 18 41 41 H 1.09004 * 109.47658 * 304.93964 * 20 19 18 42 42 H 1.09005 * 109.47102 * 300.00423 * 21 20 19 43 43 H 1.09004 * 109.46808 * 59.99405 * 21 20 19 44 44 H 0.96991 * 120.00417 * 359.97438 * 23 22 21 45 45 H 0.97003 * 119.99041 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.49686 * 178.67995 * 25 19 18 47 47 H 1.09006 * 109.52432 * 58.60089 * 25 19 18 48 48 H 1.08997 * 109.58689 * 246.15965 * 26 16 13 49 49 H 1.08998 * 109.58450 * 6.44081 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6916 9 14 5.5093 1.9644 -3.8513 10 1 5.5987 0.5046 -4.1085 11 1 5.6511 2.7018 -5.1324 12 1 6.5948 2.3708 -2.9229 13 16 2.4122 2.1203 1.4286 14 8 2.7096 1.0800 2.3499 15 8 3.3283 3.1571 1.1048 16 7 1.0430 2.8642 1.9894 17 6 0.7403 4.2531 1.6181 18 6 0.5043 5.0677 2.8886 19 6 -0.5795 4.3916 3.7315 20 6 -0.8392 5.2228 4.9894 21 6 -1.4216 6.5808 4.5922 22 6 -1.6780 7.3993 5.8312 23 7 -2.1941 8.6398 5.7245 24 8 -1.4207 6.9416 6.9244 25 6 -0.1149 2.9899 4.1336 26 6 0.1112 2.1499 2.8726 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 3.2797 3.5888 -4.5374 35 1 1.5799 4.6751 1.0658 36 1 -0.1566 4.2787 0.9991 37 1 0.1826 6.0746 2.6222 38 1 1.4304 5.1207 3.4611 39 1 -1.4981 4.3167 3.1497 40 1 -1.5462 4.6983 5.6321 41 1 0.0978 5.3723 5.5261 42 1 -0.7145 7.1054 3.9495 43 1 -2.3585 6.4313 4.0555 44 1 -2.4002 9.0057 4.8502 45 1 -2.3588 9.1667 6.5221 46 1 -0.8772 2.5178 4.7534 47 1 0.8168 3.0619 4.6947 48 1 -0.8380 2.0004 2.3581 49 1 0.5348 1.1836 3.1458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:24 Heat of formation + Delta-G solvation = -137.731142 kcal Electronic energy + Delta-G solvation = -30124.223999 eV Core-core repulsion = 26019.015606 eV Total energy + Delta-G solvation = -4105.208394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.91685 -38.65429 -36.68256 -36.00544 -35.13180 -34.59520 -33.97516 -32.66103 -31.14834 -30.46698 -29.94679 -26.59308 -25.78169 -23.36764 -23.10649 -22.33303 -21.64614 -20.56371 -20.16966 -18.31992 -17.64762 -17.43661 -16.91141 -16.67291 -16.26123 -15.88560 -15.71584 -14.96067 -14.53414 -14.42915 -14.32235 -14.18025 -13.91619 -13.68476 -13.39858 -13.24465 -13.03081 -12.81616 -12.36291 -12.12068 -12.08878 -11.90660 -11.67058 -11.59551 -11.41649 -11.34657 -11.31316 -11.07300 -10.97705 -10.89852 -10.81212 -10.48630 -10.41355 -10.34880 -10.29254 -10.19778 -10.03911 -9.97734 -9.75511 -8.80393 -8.42897 -8.04050 -6.05889 -4.09415 1.22576 2.34398 3.20717 3.34067 3.37281 3.42162 3.50136 4.10259 4.45274 4.47636 4.51321 4.63741 4.77985 4.89244 4.96788 5.13189 5.21760 5.26112 5.29250 5.35475 5.38640 5.45799 5.49134 5.65019 5.68843 5.74858 5.77753 5.80433 5.81624 5.93693 6.01181 6.03573 6.07660 6.12690 6.28264 6.37804 6.41022 6.41870 6.60228 6.63665 6.85325 6.96638 7.25594 7.43785 7.65181 7.92146 7.93919 8.22096 8.92696 9.55631 11.02624 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002749 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.794806 B =10184.406882 C =11020.518824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.778 3.222 14 O -0.997 6.997 15 O -0.963 6.963 16 N -1.010 6.010 17 C 0.120 3.880 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.099 4.099 21 C -0.145 4.145 22 C 0.515 3.485 23 N -0.861 5.861 24 O -0.545 6.545 25 C -0.125 4.125 26 C 0.121 3.879 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.402 0.598 45 H 0.399 0.601 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 5.883 13.386 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.138 3.862 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.788 3.212 14 O -0.981 6.981 15 O -0.947 6.947 16 N -0.849 5.849 17 C -0.006 4.006 18 C -0.168 4.168 19 C -0.104 4.104 20 C -0.137 4.137 21 C -0.185 4.185 22 C 0.300 3.700 23 N -0.424 5.424 24 O -0.421 6.421 25 C -0.165 4.165 26 C -0.005 4.005 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.230 0.770 45 H 0.229 0.771 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.451 5.524 14.228 20.344 hybrid contribution 0.246 0.413 -0.927 1.044 sum -13.205 5.937 13.301 19.660 Atomic orbital electron populations 1.22272 0.97294 1.01350 1.02083 1.21130 0.93058 0.83340 1.03406 1.57784 1.80915 1.21340 1.23233 1.18988 0.97231 0.91007 0.78994 1.21464 1.02093 1.27618 1.05519 0.92314 1.24911 0.97317 0.94845 0.96871 1.69902 1.36124 1.30309 1.17252 0.86598 0.84298 0.78428 0.78379 1.20195 1.21193 1.20007 1.02046 0.73329 0.73086 0.72759 1.93502 1.83340 1.57863 1.63431 1.93609 1.59311 1.57646 1.84137 1.58407 1.42796 1.21889 1.61769 1.21290 1.02426 0.80476 0.96371 1.21940 0.99336 0.98658 0.96889 1.21142 0.98697 0.94743 0.95800 1.21405 1.01890 0.93115 0.97321 1.21786 1.03565 0.97321 0.95814 1.20895 0.75697 0.81778 0.91596 1.43959 1.68076 1.17729 1.12658 1.90754 1.51298 1.70939 1.29143 1.21899 1.01962 0.95201 0.97394 1.21352 0.93619 0.95422 0.90135 0.92317 0.93271 0.92003 0.89833 0.90729 0.94793 0.94668 0.92688 0.88654 0.91683 0.90874 0.91357 0.90833 0.91185 0.91087 0.88343 0.88732 0.77015 0.77083 0.90949 0.91347 0.91793 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.00 16 3 N -0.99 -20.36 2.82 -115.65 -0.33 -20.69 16 4 C 0.26 6.39 5.10 -5.19 -0.03 6.36 16 5 C -0.53 -14.71 9.38 -34.44 -0.32 -15.03 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 S 2.78 55.50 6.10 -107.50 -0.66 54.84 16 14 O -1.00 -20.84 15.28 -57.17 -0.87 -21.71 16 15 O -0.96 -23.00 15.69 -57.17 -0.90 -23.90 16 16 N -1.01 -15.17 3.35 -113.77 -0.38 -15.55 16 17 C 0.12 1.60 6.45 -3.93 -0.03 1.58 16 18 C -0.13 -1.35 5.13 -26.83 -0.14 -1.49 16 19 C -0.09 -0.77 2.15 -90.58 -0.20 -0.96 16 20 C -0.10 -0.87 3.97 -26.73 -0.11 -0.97 16 21 C -0.14 -0.96 5.45 -27.88 -0.15 -1.11 16 22 C 0.51 4.44 8.10 -10.99 -0.09 4.35 16 23 N -0.86 -4.20 8.87 31.22 0.28 -3.93 16 24 O -0.54 -7.26 16.82 5.56 0.09 -7.17 16 25 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 26 C 0.12 1.45 5.53 -3.71 -0.02 1.43 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.50 8.11 -51.93 -0.42 1.07 16 31 H 0.07 1.23 6.91 -51.93 -0.36 0.88 16 32 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.10 1.49 6.91 -51.93 -0.36 1.13 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 37 H 0.07 0.59 6.50 -51.93 -0.34 0.26 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.10 0.54 6.53 -51.93 -0.34 0.20 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.40 0.77 8.83 -40.82 -0.36 0.41 16 45 H 0.40 1.72 8.93 -40.82 -0.36 1.35 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.66 7.50 -51.93 -0.39 0.27 16 49 H 0.09 1.13 6.92 -51.93 -0.36 0.77 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -36.27 398.56 -10.21 -46.48 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.21 Total: -0.46 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.96 Total: -5.60 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.31 Total: -65.25 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.68 Total: -52.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 55.50 SS G_CDS: -0.66 Total: 54.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.27 -10.21 -46.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.254 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds