Wall clock time and date at job start Wed Apr 1 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46498 * 109.46819 * 2 1 4 4 C 1.46498 * 119.99874 * 275.00170 * 3 2 1 5 5 C 1.50709 * 109.47113 * 274.99977 * 4 3 2 6 6 H 1.08002 * 119.99589 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00118 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99969 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47518 * 59.99146 * 9 7 5 11 11 H 1.48497 * 109.47319 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46987 * 299.99449 * 9 7 5 13 13 S 1.65595 * 120.00275 * 94.99881 * 3 2 1 14 14 O 1.42105 * 106.40149 * 23.54018 * 13 3 2 15 15 O 1.42098 * 106.40317 * 156.45891 * 13 3 2 16 16 N 1.65606 * 107.22013 * 270.00200 * 13 3 2 17 17 C 1.46923 * 120.62553 * 269.71749 * 16 13 3 18 18 C 1.52760 * 109.00861 * 233.58205 * 17 16 13 19 19 C 1.53046 * 109.38256 * 305.58983 * 18 17 16 20 20 C 1.52996 * 109.44823 * 181.25114 * 19 18 17 21 21 C 1.53002 * 109.47337 * 64.94039 * 20 19 18 22 22 C 1.50698 * 109.47522 * 179.97438 * 21 20 19 23 23 N 1.34775 * 119.99757 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99981 * 359.97438 * 22 21 20 25 25 C 1.53042 * 109.53591 * 61.23964 * 19 18 17 26 26 C 1.46921 * 120.63289 * 89.99671 * 16 13 3 27 27 H 1.09000 * 109.46418 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46892 * 299.99940 * 1 2 3 29 29 H 1.08992 * 109.47062 * 60.00677 * 1 2 3 30 30 H 1.09001 * 109.46917 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46995 * 119.99496 * 2 1 3 32 32 H 1.08996 * 109.47764 * 34.99918 * 4 3 2 33 33 H 1.09003 * 109.47361 * 155.00291 * 4 3 2 34 34 H 0.96993 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.59343 * 353.42265 * 17 16 13 36 36 H 1.09010 * 109.58634 * 113.84364 * 17 16 13 37 37 H 1.09006 * 109.56563 * 185.55777 * 18 17 16 38 38 H 1.09001 * 109.35973 * 65.50306 * 18 17 16 39 39 H 1.08998 * 109.46354 * 301.21868 * 19 18 17 40 40 H 1.08999 * 109.47426 * 184.93860 * 20 19 18 41 41 H 1.09004 * 109.47658 * 304.93964 * 20 19 18 42 42 H 1.09005 * 109.47102 * 300.00423 * 21 20 19 43 43 H 1.09004 * 109.46808 * 59.99405 * 21 20 19 44 44 H 0.96991 * 120.00417 * 359.97438 * 23 22 21 45 45 H 0.97003 * 119.99041 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.49686 * 178.67995 * 25 19 18 47 47 H 1.09006 * 109.52432 * 58.60089 * 25 19 18 48 48 H 1.08997 * 109.58689 * 246.15965 * 26 16 13 49 49 H 1.08998 * 109.58450 * 6.44081 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8824 6 1 4.1724 1.1118 -1.3836 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6916 9 14 5.5093 1.9644 -3.8513 10 1 5.5987 0.5046 -4.1085 11 1 5.6511 2.7018 -5.1324 12 1 6.5948 2.3708 -2.9229 13 16 2.4122 2.1203 1.4286 14 8 2.7096 1.0800 2.3499 15 8 3.3283 3.1571 1.1048 16 7 1.0430 2.8642 1.9894 17 6 0.7403 4.2531 1.6181 18 6 0.5043 5.0677 2.8886 19 6 -0.5795 4.3916 3.7315 20 6 -0.8392 5.2228 4.9894 21 6 -1.4216 6.5808 4.5922 22 6 -1.6780 7.3993 5.8312 23 7 -2.1941 8.6398 5.7245 24 8 -1.4207 6.9416 6.9244 25 6 -0.1149 2.9899 4.1336 26 6 0.1112 2.1499 2.8726 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0921 3.1803 -1.0756 34 1 3.2797 3.5888 -4.5374 35 1 1.5799 4.6751 1.0658 36 1 -0.1566 4.2787 0.9991 37 1 0.1826 6.0746 2.6222 38 1 1.4304 5.1207 3.4611 39 1 -1.4981 4.3167 3.1497 40 1 -1.5462 4.6983 5.6321 41 1 0.0978 5.3723 5.5261 42 1 -0.7145 7.1054 3.9495 43 1 -2.3585 6.4313 4.0555 44 1 -2.4002 9.0057 4.8502 45 1 -2.3588 9.1667 6.5221 46 1 -0.8772 2.5178 4.7534 47 1 0.8168 3.0619 4.6947 48 1 -0.8380 2.0004 2.3581 49 1 0.5348 1.1836 3.1458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336954214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:23 Heat of formation + Delta-G solvation = -166.134714 kcal Electronic energy + Delta-G solvation = -30125.455671 eV Core-core repulsion = 26019.015606 eV Total energy + Delta-G solvation = -4106.440065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.60699 -39.55762 -38.35887 -37.64429 -36.83854 -35.49554 -34.70418 -34.56284 -32.09539 -31.50202 -31.24009 -28.47970 -26.60112 -24.93354 -24.29856 -23.31165 -23.08396 -21.30195 -20.95125 -19.68831 -19.00684 -18.30585 -18.29726 -18.10310 -17.52934 -17.29361 -16.57550 -16.48372 -15.91379 -15.42380 -15.27327 -15.18524 -15.06160 -14.84791 -14.65763 -14.63948 -14.18772 -13.89058 -13.82265 -13.55089 -13.35547 -13.35184 -13.05152 -12.90012 -12.83614 -12.77845 -12.73314 -12.65444 -12.20796 -12.17941 -12.05501 -12.00976 -11.76656 -11.62298 -11.58053 -11.24334 -11.13952 -10.93491 -10.58784 -10.58523 -9.94972 -9.73931 -8.19577 -6.30689 -0.32802 1.38385 1.41536 1.48666 1.72603 2.06205 2.39903 2.59548 2.72346 3.11089 3.39237 3.73923 3.81803 3.85537 4.00675 4.04799 4.26428 4.32397 4.38544 4.42891 4.48042 4.50250 4.53726 4.61751 4.73711 4.79200 4.87835 4.90194 4.93931 4.99700 5.05677 5.06220 5.16323 5.19124 5.20671 5.25926 5.36076 5.42520 5.43696 5.53965 5.62345 5.72160 5.75755 5.95791 6.03136 6.13727 6.54082 6.76737 7.37589 7.42855 8.87544 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002749 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.794806 B =10184.406882 C =11020.518824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.997 5.997 4 C 0.278 3.722 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.280 1.280 13 S 2.787 3.213 14 O -1.011 7.011 15 O -1.011 7.011 16 N -1.002 6.002 17 C 0.114 3.886 18 C -0.126 4.126 19 C -0.076 4.076 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.509 3.491 23 N -0.842 5.842 24 O -0.602 6.602 25 C -0.126 4.126 26 C 0.113 3.887 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.016 0.984 34 H 0.268 0.732 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.419 0.581 45 H 0.403 0.597 46 H 0.096 0.904 47 H 0.048 0.952 48 H 0.094 0.906 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 6.143 13.266 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.838 5.838 4 C 0.154 3.846 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.199 1.199 12 H -0.205 1.205 13 S 2.797 3.203 14 O -0.995 6.995 15 O -0.995 6.995 16 N -0.844 5.844 17 C -0.011 4.011 18 C -0.165 4.165 19 C -0.094 4.094 20 C -0.132 4.132 21 C -0.180 4.180 22 C 0.295 3.705 23 N -0.406 5.406 24 O -0.483 6.483 25 C -0.165 4.165 26 C -0.011 4.011 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.250 0.750 45 H 0.234 0.766 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.112 0.888 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.731 5.792 14.080 21.892 hybrid contribution 0.899 0.362 -0.824 1.272 sum -14.832 6.153 13.256 20.822 Atomic orbital electron populations 1.22188 0.94157 1.03326 1.02347 1.21367 0.95727 0.81546 1.03108 1.57688 1.81554 1.22603 1.21944 1.18517 0.95520 0.90260 0.80263 1.21805 1.03430 1.27629 1.06073 0.93508 1.25672 1.00642 0.94750 0.97376 1.69979 1.37588 1.30856 1.17639 0.85719 0.79996 0.78923 0.77748 1.18983 1.19902 1.20532 1.01478 0.73923 0.72381 0.72487 1.93470 1.84145 1.58437 1.63487 1.93540 1.62080 1.59069 1.84810 1.58031 1.42067 1.22555 1.61713 1.21491 1.02077 0.79514 0.98055 1.21958 0.99279 0.99901 0.95334 1.21094 0.98913 0.93602 0.95802 1.21288 1.00772 0.94421 0.96750 1.21801 1.05230 0.95783 0.95142 1.21293 0.75145 0.82625 0.91389 1.43833 1.66257 1.16574 1.13921 1.90735 1.54009 1.72348 1.31186 1.21940 1.01919 0.96135 0.96542 1.21674 0.93782 0.95078 0.90577 0.89481 0.91702 0.92959 0.91073 0.90104 0.95382 0.96575 0.92344 0.91721 0.89308 0.87853 0.93346 0.88294 0.91614 0.93514 0.86805 0.85775 0.75010 0.76644 0.88524 0.93337 0.88835 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.99 0.74 -3.40 16 2 C 0.11 3.70 6.40 86.38 0.55 4.26 16 3 N -1.00 -41.63 2.82 -519.82 -1.47 -43.10 16 4 C 0.28 14.03 5.10 85.64 0.44 14.47 16 5 C -0.55 -31.43 9.38 25.60 0.24 -31.19 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.87 5.46 84.65 0.46 1.33 16 8 N -0.92 -53.53 13.29 21.45 0.28 -53.24 16 9 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 S 2.79 113.85 6.10 -56.49 -0.34 113.51 16 14 O -1.01 -42.85 15.28 -128.00 -1.96 -44.81 16 15 O -1.01 -50.54 15.69 -128.00 -2.01 -52.55 16 16 N -1.00 -29.45 3.35 -513.86 -1.72 -31.17 16 17 C 0.11 2.93 6.45 86.22 0.56 3.49 16 18 C -0.13 -2.40 5.13 30.53 0.16 -2.25 16 19 C -0.08 -1.15 2.15 -10.77 -0.02 -1.18 16 20 C -0.09 -1.46 3.97 30.59 0.12 -1.34 16 21 C -0.14 -1.43 5.45 29.85 0.16 -1.26 16 22 C 0.51 7.90 8.10 87.66 0.71 8.61 16 23 N -0.84 -6.31 8.87 -173.54 -1.54 -7.85 16 24 O -0.60 -15.90 16.82 -3.03 -0.05 -15.95 16 25 C -0.13 -2.34 5.36 30.67 0.16 -2.18 16 26 C 0.11 2.49 5.53 86.36 0.48 2.97 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.44 6.44 -2.39 -0.02 1.42 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 31 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16 32 H 0.03 1.43 8.11 -2.39 -0.02 1.42 16 33 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 34 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.06 2.09 6.91 -2.39 -0.02 2.07 16 36 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.10 1.35 6.50 -2.38 -0.02 1.34 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 41 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 42 H 0.11 0.83 6.53 -2.38 -0.02 0.82 16 43 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.42 0.30 8.83 -92.72 -0.82 -0.52 16 45 H 0.40 2.77 8.93 -92.71 -0.83 1.94 16 46 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 48 H 0.09 1.55 7.50 -2.39 -0.02 1.53 16 49 H 0.08 1.93 6.92 -2.39 -0.02 1.92 16 Total: -1.00 -81.97 398.56 -2.71 -84.68 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -0.68 Total: 11.26 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.75 Total: -7.67 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -4.45 Total: -135.36 kcal Atomic # 8 Polarization: -109.30 SS G_CDS: -4.02 Total: -113.31 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 113.85 SS G_CDS: -0.34 Total: 113.51 kcal Total: -81.97 -2.71 -84.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.459 kcal (2) G-P(sol) polarization free energy of solvation -81.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds