Wall clock time and date at job start Wed Apr 1 2020 04:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47207 * 2 1 4 4 C 1.46503 * 119.99696 * 275.00072 * 3 2 1 5 5 C 1.50706 * 109.47178 * 274.99382 * 4 3 2 6 6 H 1.07995 * 119.99303 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99909 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99794 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47217 * 90.00414 * 9 7 5 11 11 H 1.48508 * 109.46849 * 209.99880 * 9 7 5 12 12 H 1.48500 * 109.47464 * 329.99941 * 9 7 5 13 13 S 1.65600 * 120.00551 * 94.99315 * 3 2 1 14 14 O 1.42096 * 106.40555 * 156.46001 * 13 3 2 15 15 O 1.42105 * 106.39933 * 23.54790 * 13 3 2 16 16 N 1.65594 * 107.22250 * 270.00515 * 13 3 2 17 17 C 1.47276 * 121.35509 * 275.89929 * 16 13 3 18 18 C 1.52988 * 108.17834 * 118.47744 * 17 16 13 19 19 N 1.45648 * 110.77358 * 46.73987 * 18 17 16 20 20 C 1.33385 * 124.58893 * 338.09771 * 19 18 17 21 21 O 1.21278 * 118.48617 * 184.32221 * 20 19 18 22 22 C 1.47058 * 121.35234 * 95.89091 * 16 13 3 23 23 H 1.08994 * 109.56673 * 342.55896 * 22 16 13 24 24 C 1.52997 * 109.56516 * 102.91693 * 22 16 13 25 25 C 1.52998 * 109.46708 * 185.53041 * 24 22 16 26 26 C 1.53000 * 109.47145 * 64.40282 * 25 24 22 27 27 C 1.53008 * 109.46806 * 184.39796 * 25 24 22 28 28 H 1.09005 * 109.46422 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47451 * 300.00188 * 1 2 3 30 30 H 1.08998 * 109.46844 * 60.00506 * 1 2 3 31 31 H 1.09000 * 109.47451 * 239.99812 * 2 1 3 32 32 H 1.09006 * 109.47104 * 119.99392 * 2 1 3 33 33 H 1.08997 * 109.47433 * 34.99560 * 4 3 2 34 34 H 1.09005 * 109.47345 * 154.99545 * 4 3 2 35 35 H 0.96999 * 120.00665 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.71323 * 358.81488 * 17 16 13 37 37 H 1.09004 * 109.73178 * 238.15529 * 17 16 13 38 38 H 1.08996 * 109.21844 * 286.40586 * 18 17 16 39 39 H 1.09005 * 109.21327 * 167.07154 * 18 17 16 40 40 H 0.96997 * 117.70372 * 158.11668 * 19 18 17 41 41 H 1.08998 * 109.47434 * 305.53148 * 24 22 16 42 42 H 1.09001 * 109.47189 * 65.53507 * 24 22 16 43 43 H 1.09004 * 109.47544 * 304.39694 * 25 24 22 44 44 H 1.09000 * 109.46805 * 294.16208 * 26 25 24 45 45 H 1.08997 * 109.47454 * 54.16407 * 26 25 24 46 46 H 1.09000 * 109.47112 * 174.16872 * 26 25 24 47 47 H 1.09000 * 109.47190 * 60.00331 * 27 25 24 48 48 H 1.09003 * 109.46668 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47164 * 299.99774 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4948 1.7888 -1.8824 6 1 4.1720 1.1111 -1.3839 7 6 3.8530 2.3613 -3.0844 8 7 5.0191 2.0819 -3.6243 9 14 2.6818 3.5340 -3.9461 10 1 2.9466 4.9221 -3.4900 11 1 2.8865 3.4479 -5.4145 12 1 1.2812 3.1641 -3.6191 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1571 1.1049 15 8 2.7095 1.0801 2.3499 16 7 1.0430 2.8643 1.9893 17 6 0.6539 4.2058 1.5224 18 6 -0.7062 4.0945 0.8307 19 7 -1.6322 3.3094 1.6354 20 6 -1.2663 2.4311 2.5702 21 8 -2.1282 1.7786 3.1199 22 6 0.1663 2.2123 2.9736 23 1 0.3789 1.1436 3.0003 24 6 0.4078 2.8201 4.3568 25 6 -0.4023 2.0492 5.4010 26 6 0.1093 0.6095 5.4823 27 6 -0.2476 2.7232 6.7658 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3618 1.8096 -1.9454 34 1 2.0921 3.1802 -1.0757 35 1 5.2710 2.4843 -4.4701 36 1 1.3959 4.5791 0.8166 37 1 0.5799 4.8842 2.3724 38 1 -0.5772 3.6140 -0.1391 39 1 -1.1167 5.0935 0.6837 40 1 -2.5816 3.4338 1.4804 41 1 1.4682 2.7577 4.6010 42 1 0.0964 3.8646 4.3541 43 1 -1.4541 2.0455 5.1147 44 1 -0.0953 0.0976 4.5420 45 1 1.1835 0.6155 5.6665 46 1 -0.3961 0.0898 6.2963 47 1 -0.6121 3.7489 6.7079 48 1 -0.8244 2.1737 7.5098 49 1 0.8041 2.7269 7.0521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337175965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:27 Heat of formation + Delta-G solvation = -113.283629 kcal Electronic energy + Delta-G solvation = -32079.363385 eV Core-core repulsion = 27975.215115 eV Total energy + Delta-G solvation = -4104.148270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67876 -37.04422 -37.00788 -36.47240 -36.22961 -35.36011 -33.89410 -32.66043 -30.65845 -30.28951 -27.97785 -27.21456 -27.18831 -24.49623 -23.85263 -23.00308 -21.67894 -20.49035 -19.29227 -18.63536 -17.82864 -17.21071 -17.08144 -16.93223 -16.52743 -15.96633 -15.61075 -15.14212 -14.61337 -14.33705 -14.24413 -14.18395 -13.99226 -13.55542 -13.30899 -12.97922 -12.90141 -12.67123 -12.55963 -12.49150 -12.23338 -12.13100 -12.10518 -12.04515 -11.84251 -11.59684 -11.56857 -11.38255 -11.20341 -11.05549 -11.02334 -10.87772 -10.70804 -10.56423 -10.47141 -10.32587 -9.99041 -9.61796 -9.27498 -9.05729 -8.65934 -8.23193 -6.14123 -4.14026 0.89283 2.43240 2.95402 3.18869 3.22143 3.23423 3.29131 3.81538 4.25335 4.31183 4.50912 4.53931 4.71307 4.79866 4.84854 4.89661 5.02585 5.11267 5.13187 5.23017 5.30738 5.36349 5.51862 5.54361 5.58897 5.60647 5.64951 5.69947 5.71304 5.82968 5.84477 5.89667 5.95202 6.08221 6.14794 6.18936 6.31587 6.39837 6.42028 6.45284 6.58831 6.65843 7.00204 7.10198 7.30329 7.50511 8.01645 8.42486 8.91010 9.44197 10.99461 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.004224 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.691883 B = 6627.281976 C = 6993.468752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.983 5.983 4 C 0.229 3.771 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.893 5.893 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.777 3.223 14 O -0.954 6.954 15 O -0.982 6.982 16 N -1.014 6.014 17 C 0.104 3.896 18 C 0.092 3.908 19 N -0.712 5.712 20 C 0.523 3.477 21 O -0.544 6.544 22 C 0.142 3.858 23 H 0.128 0.872 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.148 4.148 27 C -0.144 4.144 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.398 0.602 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 3.670 13.115 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.824 5.824 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.786 3.214 14 O -0.937 6.937 15 O -0.967 6.967 16 N -0.852 5.852 17 C -0.022 4.022 18 C -0.034 4.034 19 N -0.364 5.364 20 C 0.308 3.692 21 O -0.422 6.422 22 C 0.033 3.967 23 H 0.145 0.855 24 C -0.155 4.155 25 C -0.124 4.124 26 C -0.205 4.205 27 C -0.202 4.202 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.234 0.766 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.820 3.340 13.666 19.721 hybrid contribution -1.137 0.845 -1.100 1.793 sum -14.957 4.185 12.566 19.978 Atomic orbital electron populations 1.22249 0.97121 1.01781 1.01627 1.21213 0.92896 0.82773 1.04173 1.57556 1.80931 1.21572 1.22327 1.19414 0.98375 0.90645 0.80980 1.21355 1.00800 1.29041 1.05978 0.90403 1.24870 0.95049 0.96089 0.96904 1.69888 1.20525 1.43846 1.18864 0.86938 0.81734 0.82169 0.79364 1.19753 1.20952 1.18983 1.02270 0.72970 0.73335 0.72818 1.93643 1.58312 1.57737 1.84016 1.93544 1.82774 1.57217 1.63115 1.59022 1.44692 1.26886 1.54568 1.21757 0.96066 0.84072 1.00319 1.21835 0.90323 0.96387 0.94894 1.45269 1.10653 1.42088 1.38356 1.20179 0.91349 0.78841 0.78844 1.90735 1.51281 1.46519 1.53658 1.21194 0.85981 1.00068 0.89478 0.85495 1.21911 1.02005 0.99749 0.91814 1.21259 1.01431 0.95297 0.94382 1.21862 1.01117 0.95628 1.01904 1.21818 1.01721 1.00102 0.96524 0.91826 0.93831 0.92149 0.89163 0.90224 0.94854 0.95668 0.92462 0.86900 0.89956 0.90578 0.89269 0.76628 0.90018 0.91245 0.89103 0.92351 0.92434 0.92761 0.93021 0.92624 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.12 1.91 6.40 -4.04 -0.03 1.89 16 3 N -0.98 -18.72 2.82 -115.66 -0.33 -19.05 16 4 C 0.23 4.99 4.17 -5.19 -0.02 4.97 16 5 C -0.53 -14.53 9.94 -34.44 -0.34 -14.87 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 9 Si 0.87 19.94 27.47 -169.99 -4.67 15.28 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.53 6.54 56.52 0.37 -5.16 16 13 S 2.78 51.39 6.09 -107.50 -0.65 50.74 16 14 O -0.95 -21.01 16.01 -57.18 -0.92 -21.92 16 15 O -0.98 -19.26 15.47 -57.18 -0.88 -20.14 16 16 N -1.01 -13.93 3.01 -107.70 -0.32 -14.25 16 17 C 0.10 1.13 6.39 -3.62 -0.02 1.10 16 18 C 0.09 0.81 7.34 -4.51 -0.03 0.78 16 19 N -0.71 -7.02 5.42 -61.32 -0.33 -7.35 16 20 C 0.52 6.52 6.21 -11.73 -0.07 6.45 16 21 O -0.54 -8.04 15.58 5.56 0.09 -7.96 16 22 C 0.14 1.83 1.80 -68.91 -0.12 1.71 16 23 H 0.13 1.77 5.41 -51.93 -0.28 1.49 16 24 C -0.12 -1.32 4.30 -26.73 -0.11 -1.43 16 25 C -0.10 -1.15 2.70 -90.62 -0.24 -1.39 16 26 C -0.15 -1.67 8.80 37.16 0.33 -1.34 16 27 C -0.14 -1.31 9.19 37.16 0.34 -0.97 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.59 6.57 -51.93 -0.34 0.24 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 32 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 33 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 34 H 0.03 0.53 7.04 -51.93 -0.37 0.17 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.11 1.32 7.23 -51.93 -0.38 0.94 16 37 H 0.08 0.71 7.67 -51.93 -0.40 0.32 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 3.31 8.80 -40.82 -0.36 2.95 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 43 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 44 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -34.13 392.49 -9.53 -43.66 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.14 Total: 4.11 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.05 Total: -3.07 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.21 Total: -66.61 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.71 Total: -50.02 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.28 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.65 Total: 50.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.13 -9.53 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337175965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.625 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds