Wall clock time and date at job start Wed Apr 1 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47207 * 2 1 4 4 C 1.46503 * 119.99696 * 275.00072 * 3 2 1 5 5 C 1.50706 * 109.47178 * 274.99382 * 4 3 2 6 6 H 1.07995 * 119.99303 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99909 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99794 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47217 * 90.00414 * 9 7 5 11 11 H 1.48508 * 109.46849 * 209.99880 * 9 7 5 12 12 H 1.48500 * 109.47464 * 329.99941 * 9 7 5 13 13 S 1.65600 * 120.00551 * 94.99315 * 3 2 1 14 14 O 1.42096 * 106.40555 * 156.46001 * 13 3 2 15 15 O 1.42105 * 106.39933 * 23.54790 * 13 3 2 16 16 N 1.65594 * 107.22250 * 270.00515 * 13 3 2 17 17 C 1.47276 * 121.35509 * 275.89929 * 16 13 3 18 18 C 1.52988 * 108.17834 * 118.47744 * 17 16 13 19 19 N 1.45648 * 110.77358 * 46.73987 * 18 17 16 20 20 C 1.33385 * 124.58893 * 338.09771 * 19 18 17 21 21 O 1.21278 * 118.48617 * 184.32221 * 20 19 18 22 22 C 1.47058 * 121.35234 * 95.89091 * 16 13 3 23 23 H 1.08994 * 109.56673 * 342.55896 * 22 16 13 24 24 C 1.52997 * 109.56516 * 102.91693 * 22 16 13 25 25 C 1.52998 * 109.46708 * 185.53041 * 24 22 16 26 26 C 1.53000 * 109.47145 * 64.40282 * 25 24 22 27 27 C 1.53008 * 109.46806 * 184.39796 * 25 24 22 28 28 H 1.09005 * 109.46422 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47451 * 300.00188 * 1 2 3 30 30 H 1.08998 * 109.46844 * 60.00506 * 1 2 3 31 31 H 1.09000 * 109.47451 * 239.99812 * 2 1 3 32 32 H 1.09006 * 109.47104 * 119.99392 * 2 1 3 33 33 H 1.08997 * 109.47433 * 34.99560 * 4 3 2 34 34 H 1.09005 * 109.47345 * 154.99545 * 4 3 2 35 35 H 0.96999 * 120.00665 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.71323 * 358.81488 * 17 16 13 37 37 H 1.09004 * 109.73178 * 238.15529 * 17 16 13 38 38 H 1.08996 * 109.21844 * 286.40586 * 18 17 16 39 39 H 1.09005 * 109.21327 * 167.07154 * 18 17 16 40 40 H 0.96997 * 117.70372 * 158.11668 * 19 18 17 41 41 H 1.08998 * 109.47434 * 305.53148 * 24 22 16 42 42 H 1.09001 * 109.47189 * 65.53507 * 24 22 16 43 43 H 1.09004 * 109.47544 * 304.39694 * 25 24 22 44 44 H 1.09000 * 109.46805 * 294.16208 * 26 25 24 45 45 H 1.08997 * 109.47454 * 54.16407 * 26 25 24 46 46 H 1.09000 * 109.47112 * 174.16872 * 26 25 24 47 47 H 1.09000 * 109.47190 * 60.00331 * 27 25 24 48 48 H 1.09003 * 109.46668 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47164 * 299.99774 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4948 1.7888 -1.8824 6 1 4.1720 1.1111 -1.3839 7 6 3.8530 2.3613 -3.0844 8 7 5.0191 2.0819 -3.6243 9 14 2.6818 3.5340 -3.9461 10 1 2.9466 4.9221 -3.4900 11 1 2.8865 3.4479 -5.4145 12 1 1.2812 3.1641 -3.6191 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1571 1.1049 15 8 2.7095 1.0801 2.3499 16 7 1.0430 2.8643 1.9893 17 6 0.6539 4.2058 1.5224 18 6 -0.7062 4.0945 0.8307 19 7 -1.6322 3.3094 1.6354 20 6 -1.2663 2.4311 2.5702 21 8 -2.1282 1.7786 3.1199 22 6 0.1663 2.2123 2.9736 23 1 0.3789 1.1436 3.0003 24 6 0.4078 2.8201 4.3568 25 6 -0.4023 2.0492 5.4010 26 6 0.1093 0.6095 5.4823 27 6 -0.2476 2.7232 6.7658 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3618 1.8096 -1.9454 34 1 2.0921 3.1802 -1.0757 35 1 5.2710 2.4843 -4.4701 36 1 1.3959 4.5791 0.8166 37 1 0.5799 4.8842 2.3724 38 1 -0.5772 3.6140 -0.1391 39 1 -1.1167 5.0935 0.6837 40 1 -2.5816 3.4338 1.4804 41 1 1.4682 2.7577 4.6010 42 1 0.0964 3.8646 4.3541 43 1 -1.4541 2.0455 5.1147 44 1 -0.0953 0.0976 4.5420 45 1 1.1835 0.6155 5.6665 46 1 -0.3961 0.0898 6.2963 47 1 -0.6121 3.7489 6.7079 48 1 -0.8244 2.1737 7.5098 49 1 0.8041 2.7269 7.0521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337175965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:26 Heat of formation + Delta-G solvation = -139.818089 kcal Electronic energy + Delta-G solvation = -32080.514006 eV Core-core repulsion = 27975.215115 eV Total energy + Delta-G solvation = -4105.298891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.62239 -38.50914 -38.03438 -37.81492 -37.33392 -36.94139 -34.82495 -34.66784 -31.92365 -31.45299 -29.02369 -28.82024 -28.02635 -25.43994 -24.71752 -24.63942 -23.23730 -21.41583 -20.43488 -19.55693 -19.34273 -18.85347 -18.51432 -18.23356 -17.53895 -17.10870 -16.95197 -16.21451 -16.00858 -15.60481 -15.47939 -15.19476 -14.98229 -14.80971 -14.57619 -14.29830 -14.18546 -13.87720 -13.72567 -13.66075 -13.53995 -13.45236 -13.23963 -13.16056 -13.10736 -13.00027 -12.76985 -12.69078 -12.59991 -12.40032 -12.19449 -12.06423 -11.93310 -11.79120 -11.70638 -11.66776 -11.57679 -11.00982 -10.75271 -10.16792 -10.00270 -9.82624 -8.25994 -6.32807 -0.54691 1.39529 1.44268 1.47902 1.52694 1.81550 2.19683 2.38693 2.44105 3.07673 3.20253 3.36379 3.62598 3.74710 3.84404 3.86558 4.00558 4.04281 4.15244 4.32270 4.35543 4.36379 4.43205 4.56713 4.57616 4.70165 4.75437 4.80051 4.82259 4.85352 4.93034 4.96271 4.97942 5.02062 5.04348 5.09184 5.21716 5.29740 5.30929 5.40542 5.44882 5.50085 5.53916 5.75766 5.85905 6.23495 6.32448 6.70638 7.14291 7.30423 8.91743 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.004224 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.691883 B = 6627.281976 C = 6993.468752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.991 5.991 4 C 0.238 3.762 5 C -0.544 4.544 6 H 0.023 0.977 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.945 3.055 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.223 1.223 13 S 2.788 3.212 14 O -0.995 6.995 15 O -1.003 7.003 16 N -1.003 6.003 17 C 0.090 3.910 18 C 0.092 3.908 19 N -0.699 5.699 20 C 0.526 3.474 21 O -0.570 6.570 22 C 0.140 3.860 23 H 0.112 0.888 24 C -0.115 4.115 25 C -0.101 4.101 26 C -0.150 4.150 27 C -0.141 4.141 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.267 0.733 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.410 0.590 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.278 5.824 13.349 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.016 4.016 3 N -0.831 5.831 4 C 0.114 3.886 5 C -0.583 4.583 6 H 0.041 0.959 7 C -0.192 4.192 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.145 1.145 13 S 2.799 3.201 14 O -0.978 6.978 15 O -0.987 6.987 16 N -0.844 5.844 17 C -0.035 4.035 18 C -0.033 4.033 19 N -0.350 5.350 20 C 0.311 3.689 21 O -0.449 6.449 22 C 0.031 3.969 23 H 0.130 0.870 24 C -0.155 4.155 25 C -0.120 4.120 26 C -0.207 4.207 27 C -0.199 4.199 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.151 0.849 40 H 0.247 0.753 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.479 5.488 13.906 23.001 hybrid contribution 0.081 0.103 -1.084 1.092 sum -17.398 5.591 12.823 22.324 Atomic orbital electron populations 1.22138 0.94257 1.03258 1.01895 1.21352 0.95196 0.81556 1.03484 1.57514 1.81428 1.22548 1.21605 1.19210 0.95616 0.91716 0.82088 1.21699 1.02571 1.27891 1.06184 0.95855 1.25994 0.97116 0.98311 0.97828 1.70086 1.23412 1.45960 1.19674 0.85774 0.80988 0.79279 0.77369 1.18687 1.21160 1.14510 1.01615 0.73418 0.72627 0.72484 1.93585 1.60706 1.58926 1.84616 1.93506 1.83659 1.58057 1.63470 1.58548 1.43586 1.27843 1.54443 1.22151 0.97127 0.82587 1.01608 1.21991 0.89008 0.98433 0.93885 1.45184 1.11592 1.41027 1.37224 1.19954 0.90488 0.79171 0.79324 1.90734 1.51555 1.47743 1.54913 1.21270 0.86299 0.99412 0.89935 0.87032 1.21949 1.01678 1.00837 0.91028 1.21214 1.00525 0.94977 0.95288 1.21879 1.00929 0.96271 1.01609 1.21795 1.02048 1.00586 0.95424 0.89817 0.93633 0.91605 0.90466 0.90437 0.92651 0.94097 0.92438 0.87591 0.87246 0.90785 0.84937 0.75277 0.90844 0.89342 0.90067 0.93759 0.92987 0.91590 0.91993 0.91877 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.11 3.63 6.40 86.38 0.55 4.19 16 3 N -0.99 -37.70 2.82 -519.83 -1.47 -39.17 16 4 C 0.24 10.14 4.17 85.63 0.36 10.49 16 5 C -0.54 -30.56 9.94 25.60 0.25 -30.30 16 6 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 7 C 0.00 0.28 5.47 84.65 0.46 0.74 16 8 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 9 Si 0.94 40.03 27.47 68.60 1.88 41.92 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.22 -7.87 6.54 99.48 0.65 -7.22 16 13 S 2.79 103.97 6.09 -56.49 -0.34 103.62 16 14 O -0.99 -44.60 16.01 -128.00 -2.05 -46.65 16 15 O -1.00 -40.48 15.47 -128.00 -1.98 -42.46 16 16 N -1.00 -26.04 3.01 -494.67 -1.49 -27.53 16 17 C 0.09 1.67 6.39 86.23 0.55 2.22 16 18 C 0.09 1.21 7.34 86.54 0.63 1.85 16 19 N -0.70 -11.12 5.42 -467.09 -2.53 -13.65 16 20 C 0.53 11.83 6.21 87.79 0.54 12.38 16 21 O -0.57 -15.75 15.58 -3.02 -0.05 -15.80 16 22 C 0.14 3.42 1.80 44.05 0.08 3.50 16 23 H 0.11 3.10 5.41 -2.39 -0.01 3.08 16 24 C -0.12 -2.46 4.30 30.59 0.13 -2.33 16 25 C -0.10 -2.07 2.70 -10.79 -0.03 -2.10 16 26 C -0.15 -3.32 8.80 71.98 0.63 -2.69 16 27 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 28 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.04 1.14 6.57 -2.39 -0.02 1.12 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 32 H 0.08 2.56 6.91 -2.38 -0.02 2.55 16 33 H 0.06 2.13 7.17 -2.39 -0.02 2.12 16 34 H 0.04 1.63 7.04 -2.38 -0.02 1.62 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.11 2.19 7.23 -2.39 -0.02 2.18 16 37 H 0.11 1.47 7.67 -2.39 -0.02 1.45 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.41 5.11 8.80 -92.71 -0.82 4.30 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 1.52 7.70 -2.39 -0.02 1.50 16 43 H 0.08 1.88 5.88 -2.39 -0.01 1.86 16 44 H 0.04 1.09 6.72 -2.39 -0.02 1.07 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -78.48 392.49 -2.07 -80.55 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.08 Total: 24.92 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.57 Total: -6.93 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -5.19 Total: -139.17 kcal Atomic # 8 Polarization: -100.83 SS G_CDS: -4.08 Total: -104.91 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.88 Total: 41.92 kcal Atomic # 16 Polarization: 103.97 SS G_CDS: -0.34 Total: 103.62 kcal Total: -78.48 -2.07 -80.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337175965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.263 kcal (2) G-P(sol) polarization free energy of solvation -78.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds