Wall clock time and date at job start Wed Apr 1 2020 04:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47027 * 2 1 4 4 C 1.45654 * 117.70193 * 90.00178 * 3 2 1 5 5 C 1.52984 * 110.77383 * 158.09836 * 4 3 2 6 6 N 1.47270 * 108.19077 * 46.72288 * 5 4 3 7 7 S 1.65597 * 121.35308 * 118.51537 * 6 5 4 8 8 O 1.42104 * 106.40035 * 22.87069 * 7 6 5 9 9 O 1.42105 * 106.39875 * 155.78598 * 7 6 5 10 10 N 1.65593 * 107.22198 * 269.32772 * 7 6 5 11 11 C 1.46500 * 120.00073 * 262.17102 * 10 7 6 12 12 C 1.46498 * 119.99927 * 82.16532 * 10 7 6 13 13 H 1.08994 * 109.47473 * 354.82020 * 12 10 7 14 14 C 1.52999 * 109.47366 * 234.81732 * 12 10 7 15 15 C 1.50701 * 109.47008 * 114.82134 * 12 10 7 16 16 H 1.08003 * 119.99992 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00173 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99777 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00076 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47039 * 90.00015 * 19 17 15 21 21 H 1.48500 * 109.46706 * 210.00053 * 19 17 15 22 22 H 1.48499 * 109.46893 * 330.00013 * 19 17 15 23 23 C 1.47056 * 117.29016 * 298.50245 * 6 5 4 24 24 C 1.53005 * 109.56292 * 162.55724 * 23 6 5 25 25 C 1.52996 * 109.56635 * 282.78875 * 23 6 5 26 26 C 1.33373 * 117.70604 * 269.73727 * 3 2 1 27 27 O 1.21276 * 118.49240 * 4.29890 * 26 3 2 28 28 H 1.09004 * 109.47181 * 59.99543 * 1 2 3 29 29 H 1.08996 * 109.47530 * 299.99683 * 1 2 3 30 30 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46560 * 120.00494 * 2 1 3 32 32 H 1.09003 * 109.46696 * 240.00307 * 2 1 3 33 33 H 1.08999 * 109.21453 * 278.43219 * 4 3 2 34 34 H 1.09006 * 109.21783 * 37.80609 * 4 3 2 35 35 H 1.08996 * 109.72031 * 166.39866 * 5 4 3 36 36 H 1.09008 * 109.71937 * 287.05400 * 5 4 3 37 37 H 1.09005 * 109.47203 * 89.99823 * 11 10 7 38 38 H 1.09009 * 109.47134 * 209.99684 * 11 10 7 39 39 H 1.08994 * 109.47238 * 329.99491 * 11 10 7 40 40 H 1.09000 * 109.47238 * 180.92327 * 14 12 10 41 41 H 1.09002 * 109.47691 * 300.92872 * 14 12 10 42 42 H 1.09002 * 109.46835 * 60.92887 * 14 12 10 43 43 H 0.97000 * 119.99688 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.46950 * 73.40307 * 24 23 6 45 45 H 1.08997 * 109.46592 * 193.40051 * 24 23 6 46 46 H 1.08998 * 109.47127 * 313.39687 * 24 23 6 47 47 H 1.09006 * 109.47001 * 65.05182 * 25 23 6 48 48 H 1.08993 * 109.47329 * 185.05534 * 25 23 6 49 49 H 1.09002 * 109.47358 * 305.05671 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2440 2.0196 1.2896 5 6 3.2228 3.1874 1.1530 6 7 2.8118 3.9987 -0.0053 7 16 2.3669 5.5843 0.1676 8 8 2.9670 6.0403 1.3724 9 8 2.5872 6.2026 -1.0928 10 7 0.7307 5.6096 0.4214 11 6 -0.1797 5.8749 -0.6953 12 6 0.1937 5.3666 1.7625 13 1 1.0072 5.0994 2.4368 14 6 -0.8193 4.2213 1.7065 15 6 -0.4861 6.6142 2.2651 16 1 -0.5148 7.4997 1.6474 17 6 -1.0705 6.6255 3.5138 18 7 -1.0352 5.5474 4.2662 19 14 -1.9138 8.1718 4.1364 20 1 -3.3447 8.1489 3.7402 21 1 -1.8108 8.2298 5.6167 22 1 -1.2559 9.3657 3.5473 23 6 2.8129 3.3434 -1.3218 24 6 1.9706 4.1622 -2.3023 25 6 4.2481 3.2401 -1.8416 26 6 2.2301 1.9640 -1.1808 27 8 1.9351 1.3555 -2.1875 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.2952 2.3902 1.6774 34 1 2.6545 1.2877 1.9853 35 1 3.1969 3.7966 2.0565 36 1 4.2315 2.8054 0.9951 37 1 -0.4522 4.9339 -1.1733 38 1 -1.0783 6.3666 -0.3225 39 1 0.3139 6.5214 -1.4208 40 1 -1.2310 4.0514 2.7013 41 1 -1.6246 4.4816 1.0196 42 1 -0.3239 3.3148 1.3587 43 1 -1.4460 5.5555 5.1448 44 1 2.5120 5.0667 -2.5790 45 1 1.7737 3.5690 -3.1953 46 1 1.0260 4.4338 -1.8310 47 1 4.8231 2.5798 -1.1922 48 1 4.2398 2.8367 -2.8541 49 1 4.7043 4.2300 -1.8486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337840455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:40 Heat of formation + Delta-G solvation = -83.630135 kcal Electronic energy + Delta-G solvation = -32849.895380 eV Core-core repulsion = 28747.032982 eV Total energy + Delta-G solvation = -4102.862398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.78030 -37.21158 -36.89444 -36.26392 -36.02473 -35.29993 -32.67481 -32.25931 -30.60759 -29.22100 -28.21771 -27.39367 -25.62856 -25.18703 -24.63935 -23.19816 -21.90361 -20.78640 -19.25326 -17.88116 -17.59100 -17.31053 -16.66664 -16.35969 -16.06350 -15.66193 -15.38210 -14.90507 -14.41720 -14.26040 -13.93416 -13.72591 -13.60755 -13.38653 -13.20653 -12.90802 -12.71980 -12.47780 -12.35557 -12.22952 -12.15960 -12.02520 -11.94390 -11.72367 -11.66489 -11.49340 -11.35131 -11.33464 -11.04213 -10.96588 -10.88546 -10.80208 -10.58970 -10.43578 -10.31785 -10.13735 -9.84874 -9.40357 -8.95217 -8.68542 -8.50591 -8.03459 -6.13366 -4.19347 1.04298 2.62755 2.87070 3.25191 3.29405 3.32476 3.37516 3.93861 4.35828 4.37939 4.60601 4.68961 4.88218 4.96495 5.02768 5.05878 5.18552 5.20863 5.27709 5.39727 5.42420 5.57221 5.61402 5.63007 5.69829 5.71826 5.84096 5.91427 5.93630 6.00216 6.04142 6.12998 6.21558 6.27835 6.35135 6.50724 6.56200 6.64179 6.74822 6.77178 6.94176 7.37318 7.43193 7.55075 7.70936 7.97537 8.15770 8.20531 8.82291 9.46749 10.92088 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.004982 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.455645 B = 5618.626759 C = 6575.571531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.595 5.595 4 C 0.091 3.909 5 C 0.106 3.894 6 N -1.008 6.008 7 S 2.778 3.222 8 O -0.969 6.969 9 O -0.987 6.987 10 N -0.988 5.988 11 C 0.095 3.905 12 C 0.274 3.726 13 H 0.049 0.951 14 C -0.146 4.146 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.179 3.821 24 C -0.195 4.195 25 C -0.147 4.147 26 C 0.524 3.476 27 O -0.547 6.547 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.011 0.989 43 H 0.263 0.737 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 -9.957 -7.380 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 N -0.326 5.326 4 C -0.034 4.034 5 C -0.020 4.020 6 N -0.847 5.847 7 S 2.790 3.210 8 O -0.952 6.952 9 O -0.971 6.971 10 N -0.831 5.831 11 C -0.051 4.051 12 C 0.172 3.828 13 H 0.067 0.933 14 C -0.206 4.206 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.088 3.912 24 C -0.253 4.253 25 C -0.206 4.206 26 C 0.310 3.690 27 O -0.424 6.424 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.052 0.948 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.138 0.862 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.959 -9.541 -7.731 14.115 hybrid contribution -0.884 0.340 0.707 1.182 sum 6.075 -9.201 -7.024 13.073 Atomic orbital electron populations 1.22085 0.95557 1.01951 1.02869 1.21522 0.95029 0.82410 1.02846 1.47208 1.64875 1.14553 1.06014 1.21988 1.01357 0.95586 0.84427 1.21750 0.97711 0.92755 0.89763 1.58968 1.82357 1.31602 1.11732 1.02096 0.73539 0.72546 0.72836 1.93603 1.76167 1.78072 1.47389 1.93491 1.85813 1.74816 1.43006 1.57746 1.23353 1.85030 1.16928 1.21392 0.95891 0.99522 0.88320 1.18633 0.93721 0.94891 0.75599 0.93293 1.22144 0.99312 0.95713 1.03389 1.21348 1.35617 0.97710 1.01220 0.91984 1.24882 0.95968 0.96465 0.96422 1.69834 1.44896 1.27564 1.10679 0.86505 0.79625 0.83364 0.78002 1.20665 1.21104 1.19806 1.20304 0.97412 0.89841 0.83637 1.23005 1.00760 1.02280 0.99284 1.22067 0.93468 1.03338 1.01714 1.20144 0.77764 0.88161 0.82922 1.90670 1.51974 1.64108 1.35698 0.92152 0.92130 0.91890 0.90668 0.89912 0.89769 0.89581 0.86725 0.90366 0.94133 0.89838 0.91574 0.88883 0.94827 0.97002 0.92702 0.86234 0.89830 0.90992 0.92204 0.90551 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.23 37.16 0.38 -1.52 16 2 C 0.10 1.16 5.89 -4.04 -0.02 1.13 16 3 N -0.59 -7.69 2.81 -174.90 -0.49 -8.19 16 4 C 0.09 1.08 6.57 -4.51 -0.03 1.05 16 5 C 0.11 1.37 6.41 -3.63 -0.02 1.34 16 6 N -1.01 -15.32 2.99 -100.91 -0.30 -15.62 16 7 S 2.78 52.43 5.46 -107.50 -0.59 51.84 16 8 O -0.97 -21.47 15.73 -57.17 -0.90 -22.37 16 9 O -0.99 -18.75 12.60 -57.17 -0.72 -19.47 16 10 N -0.99 -19.62 3.07 -115.85 -0.36 -19.97 16 11 C 0.09 1.65 7.82 59.85 0.47 2.12 16 12 C 0.27 6.28 2.54 -69.08 -0.18 6.10 16 13 H 0.05 1.21 7.24 -51.93 -0.38 0.84 16 14 C -0.15 -3.11 8.92 37.16 0.33 -2.78 16 15 C -0.52 -13.46 8.07 -34.44 -0.28 -13.74 16 16 H 0.06 1.62 7.70 -52.48 -0.40 1.22 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -23.62 11.31 55.43 0.63 -22.99 16 19 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.18 2.57 0.94 -132.81 -0.13 2.44 16 24 C -0.20 -2.88 7.07 37.16 0.26 -2.61 16 25 C -0.15 -1.78 8.59 37.16 0.32 -1.46 16 26 C 0.52 7.78 6.33 -11.75 -0.07 7.70 16 27 O -0.55 -9.24 15.41 5.56 0.09 -9.16 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 32 H 0.08 0.98 7.22 -51.93 -0.38 0.60 16 33 H 0.08 1.17 6.22 -51.93 -0.32 0.84 16 34 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.11 1.58 7.05 -51.93 -0.37 1.21 16 36 H 0.08 0.81 7.66 -51.92 -0.40 0.41 16 37 H 0.04 0.64 6.61 -51.93 -0.34 0.29 16 38 H 0.08 1.51 7.40 -51.92 -0.38 1.12 16 39 H 0.07 1.07 7.01 -51.93 -0.36 0.71 16 40 H 0.09 2.21 6.05 -51.93 -0.31 1.89 16 41 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 42 H 0.01 0.21 6.23 -51.93 -0.32 -0.11 16 43 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.12 1.81 5.72 -51.93 -0.30 1.52 16 45 H 0.08 1.17 7.48 -51.93 -0.39 0.78 16 46 H 0.07 1.10 3.72 -51.93 -0.19 0.91 16 47 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -30.97 378.11 -8.73 -39.70 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.70 Total: 3.52 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 0.94 Total: 1.39 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.52 Total: -66.77 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -1.53 Total: -50.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 52.43 SS G_CDS: -0.59 Total: 51.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.97 -8.73 -39.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337840455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.930 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds