Wall clock time and date at job start Wed Apr 1 2020 04:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47027 * 2 1 4 4 C 1.45654 * 117.70193 * 90.00178 * 3 2 1 5 5 C 1.52984 * 110.77383 * 158.09836 * 4 3 2 6 6 N 1.47270 * 108.19077 * 46.72288 * 5 4 3 7 7 S 1.65597 * 121.35308 * 118.51537 * 6 5 4 8 8 O 1.42104 * 106.40035 * 22.87069 * 7 6 5 9 9 O 1.42105 * 106.39875 * 155.78598 * 7 6 5 10 10 N 1.65593 * 107.22198 * 269.32772 * 7 6 5 11 11 C 1.46500 * 120.00073 * 262.17102 * 10 7 6 12 12 C 1.46498 * 119.99927 * 82.16532 * 10 7 6 13 13 H 1.08994 * 109.47473 * 354.82020 * 12 10 7 14 14 C 1.52999 * 109.47366 * 234.81732 * 12 10 7 15 15 C 1.50701 * 109.47008 * 114.82134 * 12 10 7 16 16 H 1.08003 * 119.99992 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00173 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99777 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00076 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47039 * 90.00015 * 19 17 15 21 21 H 1.48500 * 109.46706 * 210.00053 * 19 17 15 22 22 H 1.48499 * 109.46893 * 330.00013 * 19 17 15 23 23 C 1.47056 * 117.29016 * 298.50245 * 6 5 4 24 24 C 1.53005 * 109.56292 * 162.55724 * 23 6 5 25 25 C 1.52996 * 109.56635 * 282.78875 * 23 6 5 26 26 C 1.33373 * 117.70604 * 269.73727 * 3 2 1 27 27 O 1.21276 * 118.49240 * 4.29890 * 26 3 2 28 28 H 1.09004 * 109.47181 * 59.99543 * 1 2 3 29 29 H 1.08996 * 109.47530 * 299.99683 * 1 2 3 30 30 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46560 * 120.00494 * 2 1 3 32 32 H 1.09003 * 109.46696 * 240.00307 * 2 1 3 33 33 H 1.08999 * 109.21453 * 278.43219 * 4 3 2 34 34 H 1.09006 * 109.21783 * 37.80609 * 4 3 2 35 35 H 1.08996 * 109.72031 * 166.39866 * 5 4 3 36 36 H 1.09008 * 109.71937 * 287.05400 * 5 4 3 37 37 H 1.09005 * 109.47203 * 89.99823 * 11 10 7 38 38 H 1.09009 * 109.47134 * 209.99684 * 11 10 7 39 39 H 1.08994 * 109.47238 * 329.99491 * 11 10 7 40 40 H 1.09000 * 109.47238 * 180.92327 * 14 12 10 41 41 H 1.09002 * 109.47691 * 300.92872 * 14 12 10 42 42 H 1.09002 * 109.46835 * 60.92887 * 14 12 10 43 43 H 0.97000 * 119.99688 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.46950 * 73.40307 * 24 23 6 45 45 H 1.08997 * 109.46592 * 193.40051 * 24 23 6 46 46 H 1.08998 * 109.47127 * 313.39687 * 24 23 6 47 47 H 1.09006 * 109.47001 * 65.05182 * 25 23 6 48 48 H 1.08993 * 109.47329 * 185.05534 * 25 23 6 49 49 H 1.09002 * 109.47358 * 305.05671 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2440 2.0196 1.2896 5 6 3.2228 3.1874 1.1530 6 7 2.8118 3.9987 -0.0053 7 16 2.3669 5.5843 0.1676 8 8 2.9670 6.0403 1.3724 9 8 2.5872 6.2026 -1.0928 10 7 0.7307 5.6096 0.4214 11 6 -0.1797 5.8749 -0.6953 12 6 0.1937 5.3666 1.7625 13 1 1.0072 5.0994 2.4368 14 6 -0.8193 4.2213 1.7065 15 6 -0.4861 6.6142 2.2651 16 1 -0.5148 7.4997 1.6474 17 6 -1.0705 6.6255 3.5138 18 7 -1.0352 5.5474 4.2662 19 14 -1.9138 8.1718 4.1364 20 1 -3.3447 8.1489 3.7402 21 1 -1.8108 8.2298 5.6167 22 1 -1.2559 9.3657 3.5473 23 6 2.8129 3.3434 -1.3218 24 6 1.9706 4.1622 -2.3023 25 6 4.2481 3.2401 -1.8416 26 6 2.2301 1.9640 -1.1808 27 8 1.9351 1.3555 -2.1875 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.2952 2.3902 1.6774 34 1 2.6545 1.2877 1.9853 35 1 3.1969 3.7966 2.0565 36 1 4.2315 2.8054 0.9951 37 1 -0.4522 4.9339 -1.1733 38 1 -1.0783 6.3666 -0.3225 39 1 0.3139 6.5214 -1.4208 40 1 -1.2310 4.0514 2.7013 41 1 -1.6246 4.4816 1.0196 42 1 -0.3239 3.3148 1.3587 43 1 -1.4460 5.5555 5.1448 44 1 2.5120 5.0667 -2.5790 45 1 1.7737 3.5690 -3.1953 46 1 1.0260 4.4338 -1.8310 47 1 4.8231 2.5798 -1.1922 48 1 4.2398 2.8367 -2.8541 49 1 4.7043 4.2300 -1.8486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337840455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:39 Heat of formation + Delta-G solvation = -104.560641 kcal Electronic energy + Delta-G solvation = -32850.802995 eV Core-core repulsion = 28747.032982 eV Total energy + Delta-G solvation = -4103.770013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.88316 -38.66410 -38.13604 -37.89085 -37.16694 -36.85704 -34.55117 -33.32806 -31.64230 -30.96106 -29.27848 -28.51067 -27.27847 -26.97745 -25.69097 -24.25459 -22.93600 -22.49830 -20.56601 -19.30784 -18.76552 -18.74348 -18.31944 -17.75643 -17.25644 -17.02380 -16.68189 -16.47434 -15.81196 -15.41936 -15.20144 -15.14675 -14.78732 -14.66395 -14.52552 -14.22462 -13.99120 -13.82217 -13.62262 -13.51479 -13.43443 -13.26773 -13.17466 -13.10397 -13.00439 -12.85880 -12.78163 -12.70198 -12.62902 -12.56038 -12.30022 -12.16205 -12.05254 -11.90930 -11.84807 -11.82085 -11.22954 -11.05814 -10.48656 -10.09775 -9.75393 -9.66348 -8.11226 -6.23152 -0.42803 1.41935 1.44730 1.49435 1.53298 1.76568 2.00389 2.42380 2.51848 3.17149 3.26096 3.34086 3.51173 3.77060 3.89371 3.97515 4.14269 4.17373 4.20665 4.36236 4.44901 4.53134 4.54955 4.62139 4.67226 4.69303 4.72448 4.74244 4.81291 4.83244 4.91403 5.00608 5.01109 5.08772 5.12390 5.17197 5.18994 5.27589 5.33649 5.36896 5.53148 5.61946 5.75923 5.86073 6.14340 6.30459 6.37097 6.82367 7.05509 7.45176 8.92256 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.004982 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.455645 B = 5618.626759 C = 6575.571531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.092 3.908 5 C 0.098 3.902 6 N -1.002 6.002 7 S 2.790 3.210 8 O -1.005 7.005 9 O -0.992 6.992 10 N -0.997 5.997 11 C 0.093 3.907 12 C 0.283 3.717 13 H 0.028 0.972 14 C -0.129 4.129 15 C -0.539 4.539 16 H 0.051 0.949 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.948 3.052 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.277 1.277 23 C 0.174 3.826 24 C -0.194 4.194 25 C -0.145 4.145 26 C 0.522 3.478 27 O -0.571 6.571 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -11.345 -7.519 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.020 4.020 3 N -0.323 5.323 4 C -0.032 4.032 5 C -0.027 4.027 6 N -0.843 5.843 7 S 2.802 3.198 8 O -0.989 6.989 9 O -0.976 6.976 10 N -0.838 5.838 11 C -0.052 4.052 12 C 0.179 3.821 13 H 0.045 0.955 14 C -0.188 4.188 15 C -0.579 4.579 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.547 5.547 19 Si 0.774 3.226 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.202 1.202 23 C 0.084 3.916 24 C -0.253 4.253 25 C -0.204 4.204 26 C 0.308 3.692 27 O -0.451 6.451 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.132 0.868 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.563 -10.925 -7.859 15.438 hybrid contribution -1.044 0.722 0.713 1.456 sum 6.520 -10.203 -7.146 14.060 Atomic orbital electron populations 1.22042 0.95983 1.02872 1.01094 1.21698 0.94603 0.81470 1.04209 1.47298 1.64007 1.15230 1.05724 1.22044 1.00326 0.96224 0.84574 1.22021 0.99735 0.92553 0.88400 1.58637 1.81922 1.30650 1.13075 1.01533 0.72995 0.73247 0.71981 1.93553 1.76812 1.79452 1.49111 1.93488 1.85700 1.75696 1.42688 1.57680 1.24091 1.85674 1.16385 1.21493 0.95258 1.00631 0.87816 1.18308 0.93004 0.94187 0.76632 0.95456 1.21901 0.98850 0.96122 1.01977 1.21655 1.36093 0.98600 1.01554 0.93039 1.25512 0.96625 0.98812 0.96706 1.69924 1.45306 1.28650 1.10824 0.85710 0.79011 0.80349 0.77484 1.19821 1.20743 1.20244 1.20475 0.98824 0.89498 0.82823 1.22969 1.00352 1.02247 0.99696 1.22081 0.91950 1.03896 1.02461 1.20168 0.77714 0.88096 0.83225 1.90662 1.53207 1.64648 1.36584 0.94823 0.92828 0.89726 0.87327 0.90471 0.91835 0.85618 0.87923 0.87112 0.92359 0.90847 0.90533 0.91179 0.94928 0.94788 0.92606 0.86752 0.89203 0.91885 0.90573 0.89740 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.23 71.98 0.74 -2.67 16 2 C 0.10 1.98 5.89 86.38 0.51 2.49 16 3 N -0.59 -13.89 2.81 -826.43 -2.32 -16.21 16 4 C 0.09 1.98 6.57 86.53 0.57 2.54 16 5 C 0.10 2.33 6.41 86.23 0.55 2.89 16 6 N -1.00 -29.22 2.99 -473.18 -1.42 -30.64 16 7 S 2.79 104.91 5.46 -56.49 -0.31 104.61 16 8 O -1.01 -45.12 15.73 -128.00 -2.01 -47.14 16 9 O -0.99 -37.25 12.60 -128.00 -1.61 -38.86 16 10 N -1.00 -39.74 3.07 -520.45 -1.60 -41.33 16 11 C 0.09 3.24 7.82 127.77 1.00 4.24 16 12 C 0.28 13.10 2.54 44.25 0.11 13.21 16 13 H 0.03 1.39 7.24 -2.39 -0.02 1.38 16 14 C -0.13 -5.51 8.92 71.98 0.64 -4.87 16 15 C -0.54 -28.37 8.07 25.60 0.21 -28.17 16 16 H 0.05 2.74 7.70 -2.91 -0.02 2.72 16 17 C 0.02 1.25 5.30 84.66 0.45 1.70 16 18 N -0.91 -48.46 11.31 21.45 0.24 -48.21 16 19 Si 0.95 42.39 29.54 68.60 2.03 44.41 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.17 4.71 0.94 2.66 0.00 4.72 16 24 C -0.19 -5.53 7.07 71.98 0.51 -5.03 16 25 C -0.14 -3.18 8.59 71.98 0.62 -2.56 16 26 C 0.52 14.53 6.33 87.78 0.56 15.08 16 27 O -0.57 -18.50 15.41 -3.02 -0.05 -18.54 16 28 H 0.03 0.87 8.14 -2.38 -0.02 0.86 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.41 7.81 -2.39 -0.02 1.39 16 32 H 0.08 1.63 7.22 -2.39 -0.02 1.62 16 33 H 0.06 1.66 6.22 -2.39 -0.01 1.65 16 34 H 0.13 1.74 7.85 -2.38 -0.02 1.72 16 35 H 0.10 2.76 7.05 -2.39 -0.02 2.74 16 36 H 0.11 1.94 7.66 -2.38 -0.02 1.92 16 37 H 0.06 1.80 6.61 -2.38 -0.02 1.78 16 38 H 0.07 2.67 7.40 -2.38 -0.02 2.65 16 39 H 0.08 2.46 7.01 -2.39 -0.02 2.45 16 40 H 0.07 3.34 6.05 -2.39 -0.01 3.33 16 41 H 0.03 1.35 7.51 -2.39 -0.02 1.33 16 42 H 0.03 1.26 6.23 -2.39 -0.01 1.24 16 43 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 44 H 0.11 3.37 5.72 -2.39 -0.01 3.36 16 45 H 0.09 2.42 7.48 -2.39 -0.02 2.40 16 46 H 0.06 1.88 3.72 -2.39 -0.01 1.87 16 47 H 0.08 1.41 7.69 -2.38 -0.02 1.39 16 48 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.80 378.11 0.37 -66.43 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.95 Total: 21.91 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.46 Total: 3.58 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -5.09 Total: -136.39 kcal Atomic # 8 Polarization: -100.87 SS G_CDS: -3.67 Total: -104.54 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 104.91 SS G_CDS: -0.31 Total: 104.61 kcal Total: -66.80 0.37 -66.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337840455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.133 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds