Wall clock time and date at job start Wed Apr 1 2020 04:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99824 * 2 1 4 4 N 1.34774 * 119.99924 * 179.97438 * 2 1 3 5 5 C 1.47077 * 120.88194 * 179.97438 * 4 2 1 6 6 C 1.53246 * 108.52284 * 128.83612 * 5 4 2 7 7 N 1.46898 * 109.33920 * 53.82904 * 6 5 4 8 8 C 1.46897 * 111.00122 * 172.74589 * 7 6 5 9 9 C 1.52995 * 109.47298 * 170.00105 * 8 7 6 10 10 N 1.46504 * 109.47215 * 180.02562 * 9 8 7 11 11 S 1.65595 * 119.99982 * 165.00290 * 10 9 8 12 12 O 1.42101 * 104.27795 * 181.07120 * 11 10 9 13 13 O 1.42100 * 104.27852 * 308.92677 * 11 10 9 14 14 C 1.81406 * 104.45122 * 64.99709 * 11 10 9 15 15 C 1.53004 * 109.46910 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.46706 * 179.97438 * 15 14 11 17 17 C 1.50700 * 109.46840 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99908 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00339 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47148 * 60.00192 * 21 19 17 23 23 H 1.48501 * 109.47002 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47210 * 300.00172 * 21 19 17 25 25 C 1.46897 * 111.27265 * 296.89822 * 7 6 5 26 26 C 1.47081 * 120.88271 * 0.02562 * 4 2 1 27 27 H 1.09005 * 109.46878 * 240.00171 * 1 2 3 28 28 H 1.08994 * 109.47370 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47574 * 120.00288 * 1 2 3 30 30 H 1.09006 * 109.62659 * 9.13020 * 5 4 2 31 31 H 1.08993 * 109.63048 * 248.54391 * 5 4 2 32 32 H 1.08997 * 109.49034 * 173.79182 * 6 5 4 33 33 H 1.09005 * 109.49043 * 293.87421 * 6 5 4 34 34 H 1.09004 * 109.47340 * 290.00796 * 8 7 6 35 35 H 1.08997 * 109.46806 * 50.00180 * 8 7 6 36 36 H 1.09001 * 109.47025 * 300.00392 * 9 8 7 37 37 H 1.08997 * 109.47132 * 60.00274 * 9 8 7 38 38 H 0.96998 * 119.99487 * 345.00279 * 10 9 8 39 39 H 1.08997 * 109.46942 * 299.99882 * 14 11 10 40 40 H 1.09001 * 109.46540 * 59.99991 * 14 11 10 41 41 H 1.08997 * 109.47047 * 300.00511 * 15 14 11 42 42 H 1.08999 * 109.46964 * 60.00370 * 15 14 11 43 43 H 1.08997 * 109.47046 * 299.99986 * 16 15 14 44 44 H 1.08999 * 109.47106 * 60.00458 * 16 15 14 45 45 H 0.96996 * 120.00858 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.49205 * 303.14494 * 25 7 6 47 47 H 1.08998 * 109.49603 * 183.06248 * 25 7 6 48 48 H 1.08997 * 109.62944 * 350.86779 * 26 4 2 49 49 H 1.08999 * 109.63243 * 111.45177 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6515 -1.1898 0.0000 6 6 4.1247 -2.1077 1.1323 7 7 3.4831 -3.4219 0.9935 8 6 4.0386 -4.3831 1.9554 9 6 3.1870 -5.6542 1.9559 10 7 3.7406 -6.6126 2.9158 11 16 2.8365 -7.9108 3.4047 12 8 3.6704 -8.5885 4.3345 13 8 1.5983 -7.3431 3.8095 14 6 2.6204 -8.9037 1.9020 15 6 1.7910 -10.1476 2.2275 16 6 1.6083 -10.9847 0.9599 17 6 0.7920 -12.2102 1.2806 18 1 0.4385 -12.3752 2.2877 19 6 0.4955 -13.1202 0.2881 20 7 0.9254 -12.9190 -0.9383 21 14 -0.5170 -14.6389 0.6855 22 1 -1.8464 -14.2262 1.2026 23 1 -0.6943 -15.4514 -0.5448 24 1 0.1854 -15.4467 1.7147 25 6 2.0244 -3.3203 1.1334 26 6 1.4652 -2.4521 0.0005 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 4.0333 -0.1818 0.1621 31 1 4.0114 -1.5716 -0.9554 32 1 5.2071 -2.2237 1.0781 33 1 3.8529 -1.6700 2.0929 34 1 5.0615 -4.6311 1.6719 35 1 4.0347 -3.9427 2.9525 36 1 2.1642 -5.4061 2.2395 37 1 3.1909 -6.0945 0.9589 38 1 4.6368 -6.4866 3.2648 39 1 2.1056 -8.3110 1.1458 40 1 3.5965 -9.2071 1.5235 41 1 2.3062 -10.7401 2.9836 42 1 0.8149 -9.8446 2.6062 43 1 1.0929 -10.3919 0.2042 44 1 2.5842 -11.2877 0.5807 45 1 0.7172 -13.5593 -1.6365 46 1 1.7819 -2.8657 2.0940 47 1 1.5836 -4.3158 1.0801 48 1 0.4014 -2.2787 0.1630 49 1 1.6153 -2.9550 -0.9548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344987982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:39 Heat of formation + Delta-G solvation = -107.444168 kcal Electronic energy + Delta-G solvation = -28421.855655 eV Core-core repulsion = 24317.960603 eV Total energy + Delta-G solvation = -4103.895052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.62555 -38.76206 -36.99041 -36.21980 -35.80825 -34.71183 -34.40580 -32.22111 -32.14868 -30.30800 -29.10232 -27.85005 -26.26356 -24.45402 -23.76026 -22.67323 -21.45609 -20.70779 -19.44880 -19.26947 -17.77181 -17.37108 -16.84632 -16.57554 -16.29346 -16.05400 -15.87098 -15.64941 -15.49628 -15.20134 -14.71787 -14.65958 -14.50079 -14.15311 -13.98616 -13.65289 -13.15129 -12.74529 -12.63195 -12.56142 -12.49427 -12.34758 -12.20514 -12.02466 -11.94716 -11.90112 -11.82854 -11.79839 -11.65061 -11.30392 -11.17358 -10.92267 -10.90800 -10.47828 -10.22150 -9.98729 -9.79477 -9.37120 -9.27443 -9.13362 -8.79028 -8.43211 -6.08274 -4.11577 0.38516 2.21479 2.50181 2.71495 3.30072 3.34194 3.37114 3.38746 3.87056 4.10078 4.22464 4.34978 4.38820 4.40054 4.50458 4.62530 4.72845 4.74056 4.79776 4.87008 4.94781 4.96088 5.02433 5.05204 5.13590 5.21663 5.26104 5.28073 5.31570 5.36789 5.43832 5.46460 5.57735 5.68034 5.84485 5.98346 6.22191 6.39824 6.40816 6.46368 6.78117 6.83543 6.96013 7.53410 7.63324 7.73869 7.89386 8.29726 8.94425 9.53243 11.02833 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.001993 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.410613 B =14044.041778 C =15304.051693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.617 5.617 5 C 0.116 3.884 6 C 0.042 3.958 7 N -0.534 5.534 8 C 0.051 3.949 9 C 0.108 3.892 10 N -1.125 6.125 11 S 2.602 3.398 12 O -0.962 6.962 13 O -0.963 6.963 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.025 3.975 26 C 0.110 3.890 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.415 0.585 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.044 0.956 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 24.340 1.677 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.351 5.351 5 C -0.007 4.007 6 C -0.086 4.086 7 N -0.259 5.259 8 C -0.078 4.078 9 C -0.018 4.018 10 N -0.884 5.884 11 S 2.698 3.302 12 O -0.953 6.953 13 O -0.953 6.953 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.104 4.104 26 C -0.013 4.013 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.248 0.752 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.119 0.881 48 H 0.111 0.889 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.767 24.529 1.855 25.057 hybrid contribution -0.134 -0.750 0.319 0.826 sum 4.634 23.779 2.173 24.324 Atomic orbital electron populations 1.21954 0.91590 1.05560 1.04342 1.20864 0.90759 0.82885 0.75258 1.90712 1.70833 1.31057 1.50199 1.48249 1.07120 1.06181 1.73591 1.21690 0.79470 1.00629 0.98925 1.22500 0.99860 0.88532 0.97727 1.61975 1.04282 1.08614 1.51065 1.22271 0.99464 0.91674 0.94415 1.21467 0.97868 0.89478 0.93007 1.55687 1.30781 1.41912 1.59974 1.05268 0.73823 0.73982 0.77098 1.93585 1.67619 1.74403 1.59655 1.93562 1.44918 1.76163 1.80649 1.30529 1.10676 1.12703 1.19991 1.21509 0.97452 0.92425 1.03183 1.19055 0.97421 0.93732 0.90513 1.21212 1.33550 1.06273 0.95547 0.92426 1.25017 0.96024 0.98302 0.95013 1.69938 1.45833 1.36590 1.01040 0.86612 0.80738 0.82743 0.77675 1.20117 1.21244 1.20131 1.22753 0.88503 1.01397 0.97719 1.21944 0.96512 0.83035 0.99793 0.89258 0.88965 0.89158 0.88640 0.90484 0.89172 0.94139 0.89419 0.93725 0.89960 0.90393 0.75192 0.85489 0.85201 0.91555 0.91557 0.96111 0.96117 0.92815 0.93764 0.88104 0.88874 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 8.69 36.01 0.31 -0.56 16 2 C 0.51 4.51 7.82 -10.99 -0.09 4.43 16 3 O -0.55 -7.14 16.54 5.56 0.09 -7.04 16 4 N -0.62 -4.52 3.01 -172.43 -0.52 -5.04 16 5 C 0.12 0.82 6.60 -3.60 -0.02 0.80 16 6 C 0.04 0.27 5.58 -3.70 -0.02 0.25 16 7 N -0.53 -3.54 4.78 -234.29 -1.12 -4.66 16 8 C 0.05 0.33 5.41 -3.83 -0.02 0.31 16 9 C 0.11 0.84 5.38 -4.04 -0.02 0.82 16 10 N -1.13 -10.27 5.89 -10.61 -0.06 -10.33 16 11 S 2.60 34.77 5.46 -107.50 -0.59 34.18 16 12 O -0.96 -15.96 18.08 -57.54 -1.04 -17.00 16 13 O -0.96 -15.59 17.50 -57.54 -1.01 -16.60 16 14 C -0.61 -8.59 6.07 37.16 0.23 -8.36 16 15 C -0.11 -2.06 5.16 -26.73 -0.14 -2.20 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 17 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.02 0.15 5.04 -3.67 -0.02 0.13 16 26 C 0.11 0.59 6.51 -3.57 -0.02 0.56 16 27 H 0.09 0.31 7.66 -51.93 -0.40 -0.08 16 28 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.09 0.30 8.00 -51.93 -0.42 -0.11 16 30 H 0.10 0.78 7.06 -51.93 -0.37 0.41 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.08 0.67 5.73 -51.93 -0.30 0.38 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 3.03 8.62 -34.47 -0.30 2.73 16 39 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.10 0.57 5.73 -51.93 -0.30 0.28 16 48 H 0.09 0.31 6.02 -51.93 -0.31 0.00 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -37.59 404.06 -11.06 -48.65 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.26 Total: -2.54 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -0.36 Total: -16.55 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.96 Total: -45.43 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.95 Total: -40.64 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 34.77 SS G_CDS: -0.59 Total: 34.18 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.59 -11.06 -48.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344987982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.792 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds