Wall clock time and date at job start Wed Apr 1 2020 04:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99824 * 2 1 4 4 N 1.34774 * 119.99924 * 179.97438 * 2 1 3 5 5 C 1.47077 * 120.88194 * 179.97438 * 4 2 1 6 6 C 1.53246 * 108.52284 * 128.83612 * 5 4 2 7 7 N 1.46898 * 109.33920 * 53.82904 * 6 5 4 8 8 C 1.46897 * 111.00122 * 172.74589 * 7 6 5 9 9 C 1.52995 * 109.47298 * 170.00105 * 8 7 6 10 10 N 1.46504 * 109.47215 * 180.02562 * 9 8 7 11 11 S 1.65595 * 119.99982 * 165.00290 * 10 9 8 12 12 O 1.42101 * 104.27795 * 181.07120 * 11 10 9 13 13 O 1.42100 * 104.27852 * 308.92677 * 11 10 9 14 14 C 1.81406 * 104.45122 * 64.99709 * 11 10 9 15 15 C 1.53004 * 109.46910 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.46706 * 179.97438 * 15 14 11 17 17 C 1.50700 * 109.46840 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99908 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00339 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47148 * 60.00192 * 21 19 17 23 23 H 1.48501 * 109.47002 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47210 * 300.00172 * 21 19 17 25 25 C 1.46897 * 111.27265 * 296.89822 * 7 6 5 26 26 C 1.47081 * 120.88271 * 0.02562 * 4 2 1 27 27 H 1.09005 * 109.46878 * 240.00171 * 1 2 3 28 28 H 1.08994 * 109.47370 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47574 * 120.00288 * 1 2 3 30 30 H 1.09006 * 109.62659 * 9.13020 * 5 4 2 31 31 H 1.08993 * 109.63048 * 248.54391 * 5 4 2 32 32 H 1.08997 * 109.49034 * 173.79182 * 6 5 4 33 33 H 1.09005 * 109.49043 * 293.87421 * 6 5 4 34 34 H 1.09004 * 109.47340 * 290.00796 * 8 7 6 35 35 H 1.08997 * 109.46806 * 50.00180 * 8 7 6 36 36 H 1.09001 * 109.47025 * 300.00392 * 9 8 7 37 37 H 1.08997 * 109.47132 * 60.00274 * 9 8 7 38 38 H 0.96998 * 119.99487 * 345.00279 * 10 9 8 39 39 H 1.08997 * 109.46942 * 299.99882 * 14 11 10 40 40 H 1.09001 * 109.46540 * 59.99991 * 14 11 10 41 41 H 1.08997 * 109.47047 * 300.00511 * 15 14 11 42 42 H 1.08999 * 109.46964 * 60.00370 * 15 14 11 43 43 H 1.08997 * 109.47046 * 299.99986 * 16 15 14 44 44 H 1.08999 * 109.47106 * 60.00458 * 16 15 14 45 45 H 0.96996 * 120.00858 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.49205 * 303.14494 * 25 7 6 47 47 H 1.08998 * 109.49603 * 183.06248 * 25 7 6 48 48 H 1.08997 * 109.62944 * 350.86779 * 26 4 2 49 49 H 1.08999 * 109.63243 * 111.45177 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6515 -1.1898 0.0000 6 6 4.1247 -2.1077 1.1323 7 7 3.4831 -3.4219 0.9935 8 6 4.0386 -4.3831 1.9554 9 6 3.1870 -5.6542 1.9559 10 7 3.7406 -6.6126 2.9158 11 16 2.8365 -7.9108 3.4047 12 8 3.6704 -8.5885 4.3345 13 8 1.5983 -7.3431 3.8095 14 6 2.6204 -8.9037 1.9020 15 6 1.7910 -10.1476 2.2275 16 6 1.6083 -10.9847 0.9599 17 6 0.7920 -12.2102 1.2806 18 1 0.4385 -12.3752 2.2877 19 6 0.4955 -13.1202 0.2881 20 7 0.9254 -12.9190 -0.9383 21 14 -0.5170 -14.6389 0.6855 22 1 -1.8464 -14.2262 1.2026 23 1 -0.6943 -15.4514 -0.5448 24 1 0.1854 -15.4467 1.7147 25 6 2.0244 -3.3203 1.1334 26 6 1.4652 -2.4521 0.0005 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 4.0333 -0.1818 0.1621 31 1 4.0114 -1.5716 -0.9554 32 1 5.2071 -2.2237 1.0781 33 1 3.8529 -1.6700 2.0929 34 1 5.0615 -4.6311 1.6719 35 1 4.0347 -3.9427 2.9525 36 1 2.1642 -5.4061 2.2395 37 1 3.1909 -6.0945 0.9589 38 1 4.6368 -6.4866 3.2648 39 1 2.1056 -8.3110 1.1458 40 1 3.5965 -9.2071 1.5235 41 1 2.3062 -10.7401 2.9836 42 1 0.8149 -9.8446 2.6062 43 1 1.0929 -10.3919 0.2042 44 1 2.5842 -11.2877 0.5807 45 1 0.7172 -13.5593 -1.6365 46 1 1.7819 -2.8657 2.0940 47 1 1.5836 -4.3158 1.0801 48 1 0.4014 -2.2787 0.1630 49 1 1.6153 -2.9550 -0.9548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344987982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:38 Heat of formation + Delta-G solvation = -137.632112 kcal Electronic energy + Delta-G solvation = -28423.164703 eV Core-core repulsion = 24317.960603 eV Total energy + Delta-G solvation = -4105.204099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.21547 -39.38124 -38.17699 -37.07892 -36.85860 -36.43488 -35.07920 -34.13791 -32.66299 -30.81446 -29.67486 -29.61105 -26.85207 -25.60027 -24.93560 -23.25749 -22.40445 -21.98658 -20.38333 -19.93263 -18.75354 -18.50594 -18.09495 -17.59039 -17.14433 -16.91273 -16.63410 -16.49372 -16.44133 -16.26271 -15.80291 -15.69099 -15.32886 -15.10073 -14.59045 -14.46430 -14.22871 -14.02331 -13.61347 -13.52466 -13.43518 -13.20082 -13.12555 -13.03615 -13.01226 -12.94731 -12.76949 -12.71906 -12.67187 -12.61805 -12.29694 -12.21905 -12.14574 -11.78302 -11.70701 -11.35932 -11.09092 -10.90325 -10.55112 -10.35316 -9.86119 -9.32309 -8.20847 -6.31528 -0.71863 1.41744 1.43774 1.51707 1.57585 1.75730 2.00464 2.41194 2.76655 2.86813 3.12715 3.26946 3.60153 3.70533 3.79116 3.90462 3.97528 3.98961 4.10069 4.22280 4.29479 4.35728 4.42403 4.43238 4.46634 4.51853 4.58212 4.62046 4.70539 4.74556 4.80312 4.87352 4.90712 5.00720 5.05234 5.06406 5.10476 5.13109 5.44201 5.48007 5.66392 5.81944 5.88868 5.95910 6.12337 6.22044 6.39543 6.84227 7.11122 7.37659 8.90214 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.001993 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.410613 B =14044.041778 C =15304.051693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.503 3.497 3 O -0.603 6.603 4 N -0.616 5.616 5 C 0.114 3.886 6 C 0.049 3.951 7 N -0.536 5.536 8 C 0.055 3.945 9 C 0.100 3.900 10 N -1.109 6.109 11 S 2.635 3.365 12 O -0.994 6.994 13 O -0.989 6.989 14 C -0.608 4.608 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.553 4.553 18 H 0.060 0.940 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.021 3.979 26 C 0.109 3.891 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.426 0.574 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.005 0.995 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.037 0.963 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 24.134 1.824 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.294 3.706 3 O -0.485 6.485 4 N -0.349 5.349 5 C -0.009 4.009 6 C -0.080 4.080 7 N -0.262 5.262 8 C -0.074 4.074 9 C -0.026 4.026 10 N -0.871 5.871 11 S 2.730 3.270 12 O -0.984 6.984 13 O -0.979 6.979 14 C -0.739 4.739 15 C -0.147 4.147 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.078 0.922 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.108 4.108 26 C -0.013 4.013 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.263 0.737 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.126 0.874 48 H 0.134 0.866 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.324 24.286 2.012 24.749 hybrid contribution 0.046 -0.647 0.241 0.692 sum 4.370 23.639 2.253 24.145 Atomic orbital electron populations 1.21972 0.88602 1.05992 1.06218 1.21584 0.92300 0.82410 0.74262 1.90683 1.72099 1.32867 1.52817 1.48391 1.07322 1.06697 1.72472 1.21678 0.79737 1.00006 0.99518 1.22442 1.00635 0.88168 0.96709 1.62012 1.04603 1.08581 1.50997 1.22240 0.99821 0.90941 0.94423 1.21688 0.97996 0.89735 0.93140 1.55228 1.31069 1.40572 1.60234 1.04071 0.73048 0.73862 0.76044 1.93540 1.68307 1.75661 1.60928 1.93529 1.46648 1.76689 1.81055 1.30489 1.10890 1.10967 1.21535 1.21314 0.98750 0.94072 1.00527 1.18957 0.95655 0.93599 0.92503 1.21725 1.33948 1.07626 0.95780 0.92214 1.25911 0.97202 1.01536 0.94882 1.70050 1.47059 1.37802 1.01961 0.85562 0.79330 0.78887 0.77675 1.19182 1.20722 1.19397 1.22830 0.88365 1.01897 0.97688 1.22127 0.97571 0.81820 0.99794 0.87341 0.89398 0.87004 0.90264 0.90034 0.87804 0.95141 0.88144 0.93909 0.90154 0.88969 0.73732 0.83340 0.83609 0.91771 0.91402 0.97617 0.97982 0.92654 0.94429 0.87351 0.86582 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.69 71.24 0.62 -0.79 16 2 C 0.50 8.68 7.82 87.66 0.69 9.36 16 3 O -0.60 -16.22 16.54 -3.02 -0.05 -16.27 16 4 N -0.62 -8.45 3.01 -817.84 -2.46 -10.91 16 5 C 0.11 1.57 6.60 86.35 0.57 2.14 16 6 C 0.05 0.56 5.58 86.39 0.48 1.04 16 7 N -0.54 -5.99 4.78 -895.16 -4.28 -10.27 16 8 C 0.05 0.58 5.41 86.30 0.47 1.04 16 9 C 0.10 1.29 5.38 86.38 0.47 1.76 16 10 N -1.11 -17.50 5.89 -187.49 -1.10 -18.60 16 11 S 2.63 65.95 5.46 -56.49 -0.31 65.64 16 12 O -0.99 -31.71 18.08 -127.65 -2.31 -34.02 16 13 O -0.99 -30.53 17.50 -127.65 -2.23 -32.76 16 14 C -0.61 -16.20 6.07 71.98 0.44 -15.76 16 15 C -0.11 -4.11 5.16 30.60 0.16 -3.96 16 16 C 0.03 1.54 4.97 29.85 0.15 1.69 16 17 C -0.55 -30.68 9.11 25.60 0.23 -30.45 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.00 0.17 5.46 84.65 0.46 0.63 16 20 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 21 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.02 0.21 5.04 86.40 0.44 0.65 16 26 C 0.11 0.93 6.51 86.37 0.56 1.49 16 27 H 0.11 0.50 7.66 -2.38 -0.02 0.48 16 28 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 29 H 0.11 0.46 8.00 -2.39 -0.02 0.44 16 30 H 0.08 1.36 7.06 -2.38 -0.02 1.35 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.88 8.11 -2.39 -0.02 0.86 16 33 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.04 0.48 8.08 -2.39 -0.02 0.46 16 36 H 0.08 1.11 5.73 -2.39 -0.01 1.10 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.43 5.10 8.62 -96.75 -0.83 4.26 16 39 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.04 0.44 8.14 -2.39 -0.02 0.43 16 47 H 0.11 0.96 5.73 -2.39 -0.01 0.95 16 48 H 0.12 0.44 6.02 -2.39 -0.01 0.43 16 49 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -81.90 404.06 -4.60 -86.50 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.11 Total: 10.82 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 5.72 Total: -31.17 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -7.56 Total: -94.09 kcal Atomic # 8 Polarization: -78.46 SS G_CDS: -4.59 Total: -83.05 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 65.95 SS G_CDS: -0.31 Total: 65.64 kcal Total: -81.90 -4.60 -86.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344987982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.131 kcal (2) G-P(sol) polarization free energy of solvation -81.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds