Wall clock time and date at job start Wed Apr 1 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00216 * 2 1 4 4 C 1.50704 * 109.46958 * 275.00280 * 3 2 1 5 5 H 1.08004 * 119.99978 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99797 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00405 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46862 * 90.00193 * 8 6 4 10 10 H 1.48498 * 109.47169 * 210.00666 * 8 6 4 11 11 H 1.48502 * 109.46903 * 330.00655 * 8 6 4 12 12 S 1.65596 * 119.99810 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.39996 * 156.45731 * 12 2 1 14 14 O 1.42095 * 106.40316 * 23.54369 * 12 2 1 15 15 N 1.65601 * 107.22291 * 270.00073 * 12 2 1 16 16 C 1.47749 * 125.81930 * 275.64923 * 15 12 2 17 17 C 1.54917 * 104.83805 * 155.82589 * 16 15 12 18 18 C 1.55153 * 101.57843 * 37.09189 * 17 16 15 19 19 C 1.47021 * 125.64775 * 95.73402 * 15 12 2 20 20 H 1.08999 * 109.88502 * 300.60002 * 19 15 12 21 21 C 1.53000 * 109.87818 * 61.61564 * 19 15 12 22 22 N 1.46901 * 109.46950 * 187.72488 * 21 19 15 23 23 C 1.47025 * 110.99514 * 284.67066 * 22 21 19 24 24 C 1.53097 * 109.25296 * 177.60959 * 23 22 21 25 25 O 1.43017 * 109.26376 * 56.84766 * 24 23 22 26 26 C 1.43017 * 113.73556 * 301.32767 * 25 24 23 27 27 C 1.47014 * 111.00159 * 161.03603 * 22 21 19 28 28 H 1.09000 * 109.47089 * 270.00305 * 1 2 3 29 29 H 1.09000 * 109.47024 * 30.00012 * 1 2 3 30 30 H 1.08990 * 109.47258 * 150.00367 * 1 2 3 31 31 H 1.09005 * 109.47359 * 34.99656 * 3 2 1 32 32 H 1.08997 * 109.47333 * 155.00221 * 3 2 1 33 33 H 0.97006 * 119.99350 * 179.97438 * 7 6 4 34 34 H 1.09000 * 110.29168 * 37.02008 * 16 15 12 35 35 H 1.08993 * 110.52691 * 274.74702 * 16 15 12 36 36 H 1.08997 * 111.00378 * 279.01512 * 17 16 15 37 37 H 1.08999 * 111.00021 * 155.16920 * 17 16 15 38 38 H 1.09007 * 110.71877 * 206.12652 * 18 17 16 39 39 H 1.09001 * 110.71931 * 82.86457 * 18 17 16 40 40 H 1.09001 * 109.47641 * 67.72461 * 21 19 15 41 41 H 1.08994 * 109.47218 * 307.71872 * 21 19 15 42 42 H 1.08996 * 109.50820 * 297.53828 * 23 22 21 43 43 H 1.08993 * 109.50363 * 57.67302 * 23 22 21 44 44 H 1.09007 * 109.50397 * 296.91109 * 24 23 22 45 45 H 1.09000 * 109.50783 * 176.78450 * 24 23 22 46 46 H 1.08994 * 109.51028 * 298.73595 * 26 25 24 47 47 H 1.09000 * 109.50675 * 178.60195 * 26 25 24 48 48 H 1.09001 * 109.50721 * 302.32283 * 27 22 21 49 49 H 1.08999 * 109.50252 * 62.41166 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2333 6 6 3.0007 2.9503 -1.6665 7 7 3.1266 3.3836 -2.9018 8 14 3.7149 3.9397 -0.2522 9 1 5.1118 3.5040 0.0009 10 1 3.7020 5.3829 -0.6015 11 1 2.8986 3.7185 0.9685 12 16 2.2929 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5440 14 8 1.4113 -2.4067 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 3.6423 -1.3858 2.4432 17 6 3.1075 -1.5308 3.8899 18 6 2.2866 -2.8434 3.7884 19 6 1.6924 -2.7705 2.3661 20 1 0.6733 -2.3863 2.4093 21 6 1.6974 -4.1612 1.7281 22 7 0.7109 -5.0138 2.4047 23 6 1.2037 -5.4480 3.7200 24 6 0.1236 -6.2824 4.4136 25 8 -0.2297 -7.3867 3.5763 26 6 -0.7144 -6.9999 2.2876 27 6 0.3572 -6.1728 1.5723 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5137 31 1 1.6502 2.0044 0.5894 32 1 3.1858 1.1177 0.4343 33 1 3.5901 4.2173 -3.0784 34 1 3.8710 -0.3424 2.2261 35 1 4.5282 -2.0049 2.3024 36 1 2.4678 -0.6894 4.1561 37 1 3.9272 -1.6365 4.6006 38 1 1.4944 -2.8617 4.5369 39 1 2.9356 -3.7131 3.8912 40 1 2.6888 -4.6032 1.8279 41 1 1.4416 -4.0774 0.6720 42 1 2.1025 -6.0509 3.5911 43 1 1.4352 -4.5739 4.3286 44 1 -0.7562 -5.6638 4.5909 45 1 0.5055 -6.6542 5.3645 46 1 -1.6186 -6.4023 2.4030 47 1 -0.9386 -7.8907 1.7007 48 1 -0.0292 -5.8279 0.6133 49 1 1.2427 -6.7869 1.4084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345236112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:42 Heat of formation + Delta-G solvation = -90.143011 kcal Electronic energy + Delta-G solvation = -30946.248534 eV Core-core repulsion = 26843.103717 eV Total energy + Delta-G solvation = -4103.144818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.08887 -38.59236 -36.78834 -35.69649 -35.64223 -35.26156 -32.40725 -31.70022 -30.97812 -30.32172 -28.41831 -27.45489 -25.20441 -24.44721 -23.91916 -22.04624 -21.71958 -21.21805 -20.55069 -18.49729 -17.51538 -17.13460 -16.89873 -16.50557 -16.39979 -15.90894 -15.47055 -15.34552 -15.24580 -14.80248 -14.32238 -14.09839 -14.02654 -13.66974 -13.62280 -13.32545 -13.07847 -12.64886 -12.60125 -12.48425 -12.42928 -12.23041 -11.90087 -11.77835 -11.64962 -11.50701 -11.38261 -11.31761 -11.26497 -11.06933 -10.87693 -10.73661 -10.68917 -10.56785 -10.44927 -10.26574 -9.90317 -9.58169 -9.00527 -8.62127 -8.58962 -8.14308 -6.10737 -4.10367 1.01863 3.23095 3.26490 3.29356 3.32433 3.55135 3.67532 3.98384 4.33187 4.35577 4.47890 4.59245 4.69655 4.75949 4.83026 4.89810 4.98103 4.99640 5.14233 5.18651 5.19370 5.25058 5.34744 5.37665 5.48857 5.50860 5.54805 5.56602 5.60658 5.67352 5.71089 5.73856 5.87325 5.92979 5.98314 6.07966 6.14539 6.24768 6.37900 6.50396 6.68648 6.72987 6.79865 6.88121 7.04576 7.36064 7.54872 8.46295 8.93826 9.47954 11.02860 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.003132 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.819358 B = 8936.751455 C = 9578.737898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.990 5.990 3 C 0.228 3.772 4 C -0.533 4.533 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.265 1.265 12 S 2.792 3.208 13 O -0.957 6.957 14 O -0.985 6.985 15 N -1.020 6.020 16 C 0.121 3.879 17 C -0.131 4.131 18 C -0.127 4.127 19 C 0.162 3.838 20 H 0.083 0.917 21 C 0.023 3.977 22 N -0.529 5.529 23 C -0.005 4.005 24 C 0.063 3.937 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.017 3.983 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 -16.316 18.118 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.831 5.831 3 C 0.104 3.896 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.189 1.189 12 S 2.802 3.198 13 O -0.941 6.941 14 O -0.970 6.970 15 N -0.858 5.858 16 C -0.005 4.005 17 C -0.170 4.170 18 C -0.165 4.165 19 C 0.054 3.946 20 H 0.101 0.899 21 C -0.106 4.106 22 N -0.254 5.254 23 C -0.133 4.133 24 C -0.014 4.014 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.111 4.111 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.059 0.941 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.115 0.885 48 H 0.110 0.890 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.195 -16.519 17.258 24.448 hybrid contribution 1.106 0.748 0.585 1.458 sum -4.089 -15.771 17.843 24.162 Atomic orbital electron populations 1.21372 0.79541 1.03876 1.00266 1.57442 1.14603 1.22536 1.88530 1.19438 0.90654 0.80840 0.98643 1.21373 1.36925 1.07092 0.91804 0.90444 1.24877 0.95347 0.97179 0.95571 1.69901 1.42474 1.22009 1.18862 0.86920 0.80393 0.79787 0.83051 1.19747 1.20881 1.18923 1.01706 0.73509 0.72713 0.71901 1.93639 1.40629 1.84854 1.74944 1.93483 1.67325 1.59893 1.76264 1.59575 1.36956 1.58093 1.31221 1.22003 0.89173 0.99973 0.89330 1.22824 1.00013 0.97956 0.96231 1.22944 0.99587 0.98126 0.95881 1.21111 0.94674 0.88384 0.90397 0.89918 1.22964 0.93739 0.92852 1.01092 1.62031 1.41986 1.18257 1.03127 1.23359 0.97102 1.00483 0.92357 1.22680 0.97210 0.88185 0.93286 1.87967 1.84820 1.31878 1.26097 1.22676 0.95729 0.98935 0.83883 1.22818 0.98860 0.91730 0.97721 0.94210 0.90163 0.91250 0.94884 0.95584 0.92481 0.90494 0.91446 0.90435 0.90170 0.89859 0.90669 0.94149 0.87463 0.94108 0.87764 0.92239 0.88694 0.92098 0.88492 0.89002 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.68 59.85 0.64 2.26 16 2 N -0.99 -20.18 3.23 -123.05 -0.40 -20.57 16 3 C 0.23 5.35 4.15 -5.19 -0.02 5.33 16 4 C -0.53 -15.23 9.94 -34.44 -0.34 -15.58 16 5 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -27.50 13.96 55.43 0.77 -26.73 16 8 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 12 S 2.79 54.96 6.24 -107.50 -0.67 54.29 16 13 O -0.96 -22.83 16.78 -57.17 -0.96 -23.79 16 14 O -0.99 -19.74 13.87 -57.17 -0.79 -20.53 16 15 N -1.02 -15.09 3.47 -104.18 -0.36 -15.45 16 16 C 0.12 1.52 7.07 -2.35 -0.02 1.51 16 17 C -0.13 -1.18 7.09 -24.58 -0.17 -1.36 16 18 C -0.13 -1.10 4.43 -24.90 -0.11 -1.21 16 19 C 0.16 1.94 3.24 -66.96 -0.22 1.73 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 21 C 0.02 0.28 4.76 -3.82 -0.02 0.26 16 22 N -0.53 -5.70 4.66 -234.30 -1.09 -6.79 16 23 C -0.01 -0.05 4.77 -3.71 -0.02 -0.06 16 24 C 0.06 0.52 7.01 37.21 0.26 0.78 16 25 O -0.39 -4.00 10.83 -35.23 -0.38 -4.38 16 26 C 0.06 0.58 7.01 37.21 0.26 0.84 16 27 C 0.02 0.17 5.60 -3.71 -0.02 0.15 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 30 H 0.07 1.13 7.02 -51.93 -0.36 0.77 16 31 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 32 H 0.03 0.61 7.04 -51.93 -0.37 0.24 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.58 7.17 -51.92 -0.37 0.21 16 39 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 40 H 0.04 0.49 7.81 -51.93 -0.41 0.09 16 41 H 0.11 1.62 5.30 -51.93 -0.28 1.34 16 42 H 0.04 0.38 8.13 -51.93 -0.42 -0.04 16 43 H 0.10 0.75 3.92 -51.93 -0.20 0.55 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.95 8.02 -51.93 -0.42 0.53 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -34.99 384.58 -10.83 -45.82 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.20 Total: -0.54 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.12 Total: -3.33 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.08 Total: -69.54 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -2.13 Total: -48.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.67 Total: 54.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.99 -10.83 -45.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345236112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.325 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds