Wall clock time and date at job start Wed Apr 1 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00216 * 2 1 4 4 C 1.50704 * 109.46958 * 275.00280 * 3 2 1 5 5 H 1.08004 * 119.99978 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99797 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00405 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46862 * 90.00193 * 8 6 4 10 10 H 1.48498 * 109.47169 * 210.00666 * 8 6 4 11 11 H 1.48502 * 109.46903 * 330.00655 * 8 6 4 12 12 S 1.65596 * 119.99810 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.39996 * 156.45731 * 12 2 1 14 14 O 1.42095 * 106.40316 * 23.54369 * 12 2 1 15 15 N 1.65601 * 107.22291 * 270.00073 * 12 2 1 16 16 C 1.47749 * 125.81930 * 275.64923 * 15 12 2 17 17 C 1.54917 * 104.83805 * 155.82589 * 16 15 12 18 18 C 1.55153 * 101.57843 * 37.09189 * 17 16 15 19 19 C 1.47021 * 125.64775 * 95.73402 * 15 12 2 20 20 H 1.08999 * 109.88502 * 300.60002 * 19 15 12 21 21 C 1.53000 * 109.87818 * 61.61564 * 19 15 12 22 22 N 1.46901 * 109.46950 * 187.72488 * 21 19 15 23 23 C 1.47025 * 110.99514 * 284.67066 * 22 21 19 24 24 C 1.53097 * 109.25296 * 177.60959 * 23 22 21 25 25 O 1.43017 * 109.26376 * 56.84766 * 24 23 22 26 26 C 1.43017 * 113.73556 * 301.32767 * 25 24 23 27 27 C 1.47014 * 111.00159 * 161.03603 * 22 21 19 28 28 H 1.09000 * 109.47089 * 270.00305 * 1 2 3 29 29 H 1.09000 * 109.47024 * 30.00012 * 1 2 3 30 30 H 1.08990 * 109.47258 * 150.00367 * 1 2 3 31 31 H 1.09005 * 109.47359 * 34.99656 * 3 2 1 32 32 H 1.08997 * 109.47333 * 155.00221 * 3 2 1 33 33 H 0.97006 * 119.99350 * 179.97438 * 7 6 4 34 34 H 1.09000 * 110.29168 * 37.02008 * 16 15 12 35 35 H 1.08993 * 110.52691 * 274.74702 * 16 15 12 36 36 H 1.08997 * 111.00378 * 279.01512 * 17 16 15 37 37 H 1.08999 * 111.00021 * 155.16920 * 17 16 15 38 38 H 1.09007 * 110.71877 * 206.12652 * 18 17 16 39 39 H 1.09001 * 110.71931 * 82.86457 * 18 17 16 40 40 H 1.09001 * 109.47641 * 67.72461 * 21 19 15 41 41 H 1.08994 * 109.47218 * 307.71872 * 21 19 15 42 42 H 1.08996 * 109.50820 * 297.53828 * 23 22 21 43 43 H 1.08993 * 109.50363 * 57.67302 * 23 22 21 44 44 H 1.09007 * 109.50397 * 296.91109 * 24 23 22 45 45 H 1.09000 * 109.50783 * 176.78450 * 24 23 22 46 46 H 1.08994 * 109.51028 * 298.73595 * 26 25 24 47 47 H 1.09000 * 109.50675 * 178.60195 * 26 25 24 48 48 H 1.09001 * 109.50721 * 302.32283 * 27 22 21 49 49 H 1.08999 * 109.50252 * 62.41166 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2333 6 6 3.0007 2.9503 -1.6665 7 7 3.1266 3.3836 -2.9018 8 14 3.7149 3.9397 -0.2522 9 1 5.1118 3.5040 0.0009 10 1 3.7020 5.3829 -0.6015 11 1 2.8986 3.7185 0.9685 12 16 2.2929 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5440 14 8 1.4113 -2.4067 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 3.6423 -1.3858 2.4432 17 6 3.1075 -1.5308 3.8899 18 6 2.2866 -2.8434 3.7884 19 6 1.6924 -2.7705 2.3661 20 1 0.6733 -2.3863 2.4093 21 6 1.6974 -4.1612 1.7281 22 7 0.7109 -5.0138 2.4047 23 6 1.2037 -5.4480 3.7200 24 6 0.1236 -6.2824 4.4136 25 8 -0.2297 -7.3867 3.5763 26 6 -0.7144 -6.9999 2.2876 27 6 0.3572 -6.1728 1.5723 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5137 31 1 1.6502 2.0044 0.5894 32 1 3.1858 1.1177 0.4343 33 1 3.5901 4.2173 -3.0784 34 1 3.8710 -0.3424 2.2261 35 1 4.5282 -2.0049 2.3024 36 1 2.4678 -0.6894 4.1561 37 1 3.9272 -1.6365 4.6006 38 1 1.4944 -2.8617 4.5369 39 1 2.9356 -3.7131 3.8912 40 1 2.6888 -4.6032 1.8279 41 1 1.4416 -4.0774 0.6720 42 1 2.1025 -6.0509 3.5911 43 1 1.4352 -4.5739 4.3286 44 1 -0.7562 -5.6638 4.5909 45 1 0.5055 -6.6542 5.3645 46 1 -1.6186 -6.4023 2.4030 47 1 -0.9386 -7.8907 1.7007 48 1 -0.0292 -5.8279 0.6133 49 1 1.2427 -6.7869 1.4084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345236112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:40 Heat of formation + Delta-G solvation = -118.863407 kcal Electronic energy + Delta-G solvation = -30947.493944 eV Core-core repulsion = 26843.103717 eV Total energy + Delta-G solvation = -4104.390227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.88809 -39.45131 -38.42071 -37.33737 -36.95485 -36.50217 -34.53860 -32.46871 -31.84535 -31.20067 -30.31710 -28.26310 -26.84762 -25.21948 -24.75584 -23.84333 -22.79391 -22.10128 -21.28748 -19.86567 -19.23168 -18.62523 -18.51234 -17.56029 -17.28620 -17.12392 -16.54075 -16.27434 -16.26401 -15.94602 -15.59824 -15.50851 -14.94670 -14.85286 -14.61070 -14.58825 -14.42492 -14.31841 -14.07736 -13.56777 -13.46848 -13.32116 -13.21877 -13.17449 -13.05159 -13.00162 -12.66735 -12.47305 -12.40542 -12.30621 -12.28379 -12.00997 -11.82824 -11.72978 -11.58289 -11.53364 -11.32048 -10.81005 -10.63883 -10.11369 -9.80476 -9.43825 -8.31567 -6.38461 -0.49662 1.35225 1.39917 1.48502 1.94390 2.33929 2.41956 2.77485 3.00249 3.01904 3.17835 3.55982 3.72059 3.89586 3.94648 3.99394 4.06603 4.14121 4.21456 4.23688 4.34017 4.37711 4.45546 4.56727 4.60480 4.64206 4.67160 4.74140 4.76737 4.81385 4.83486 4.89198 4.92185 4.96833 4.99498 5.02741 5.04825 5.09665 5.19002 5.29794 5.39505 5.42188 5.45457 5.75564 5.87462 5.99813 6.20688 6.27212 6.64232 7.24772 8.86221 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.003132 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.819358 B = 8936.751455 C = 9578.737898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.000 6.000 3 C 0.236 3.764 4 C -0.547 4.547 5 H 0.024 0.976 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.226 1.226 12 S 2.802 3.198 13 O -1.009 7.009 14 O -0.999 6.999 15 N -1.014 6.014 16 C 0.104 3.896 17 C -0.118 4.118 18 C -0.118 4.118 19 C 0.155 3.845 20 H 0.085 0.915 21 C 0.025 3.975 22 N -0.531 5.531 23 C -0.005 4.005 24 C 0.060 3.940 25 O -0.406 6.406 26 C 0.069 3.931 27 C 0.014 3.986 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.269 0.731 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.125 0.875 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.111 0.889 48 H 0.082 0.918 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -16.468 22.979 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.841 5.841 3 C 0.112 3.888 4 C -0.587 4.587 5 H 0.043 0.957 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.148 1.148 12 S 2.813 3.187 13 O -0.992 6.992 14 O -0.983 6.983 15 N -0.855 5.855 16 C -0.020 4.020 17 C -0.156 4.156 18 C -0.156 4.156 19 C 0.048 3.952 20 H 0.103 0.897 21 C -0.105 4.105 22 N -0.257 5.257 23 C -0.132 4.132 24 C -0.016 4.016 25 O -0.325 6.325 26 C -0.008 4.008 27 C -0.114 4.114 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.142 0.858 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.101 0.899 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.520 -16.699 22.121 28.261 hybrid contribution 1.147 0.656 -1.008 1.662 sum -4.373 -16.043 21.113 26.875 Atomic orbital electron populations 1.21568 0.77756 1.03416 1.02740 1.57422 1.15899 1.21576 1.89202 1.19211 0.91739 0.82469 0.95419 1.21703 1.36649 1.06976 0.93327 0.95745 1.26000 0.95653 0.98595 0.98985 1.70084 1.43952 1.22927 1.21923 0.85755 0.79896 0.77583 0.80084 1.19218 1.20300 1.14819 1.01040 0.72356 0.72400 0.72898 1.93567 1.43042 1.85546 1.77094 1.93465 1.67342 1.59958 1.77518 1.59120 1.38118 1.58323 1.29979 1.22349 0.88875 0.99395 0.91409 1.22819 1.00868 0.98187 0.93768 1.22981 1.00428 0.98538 0.93668 1.21394 0.94663 0.87101 0.91992 0.89731 1.22829 0.94069 0.93913 0.99642 1.62059 1.41384 1.18333 1.03902 1.23475 0.97100 1.01351 0.91319 1.22874 0.97279 0.87805 0.93682 1.87948 1.84933 1.33137 1.26511 1.22707 0.95081 0.99357 0.83684 1.22851 0.99087 0.91750 0.97743 0.90115 0.91184 0.91256 0.92480 0.95017 0.92260 0.91587 0.91041 0.89744 0.87346 0.87013 0.89554 0.94288 0.90728 0.94662 0.85753 0.91664 0.86485 0.91746 0.87087 0.89937 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.01 10.68 127.77 1.36 4.37 16 2 N -1.00 -40.83 3.23 -543.23 -1.75 -42.58 16 3 C 0.24 10.98 4.15 85.63 0.36 11.34 16 4 C -0.55 -32.39 9.94 25.60 0.25 -32.13 16 5 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 6 C 0.01 0.32 5.47 84.65 0.46 0.78 16 7 N -0.95 -60.63 13.96 21.45 0.30 -60.34 16 8 Si 0.95 42.47 27.47 68.60 1.88 44.35 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.23 -8.67 6.54 99.48 0.65 -8.02 16 12 S 2.80 112.56 6.24 -56.49 -0.35 112.21 16 13 O -1.01 -50.09 16.78 -128.00 -2.15 -52.23 16 14 O -1.00 -41.44 13.87 -128.00 -1.77 -43.22 16 15 N -1.01 -28.80 3.47 -483.51 -1.68 -30.48 16 16 C 0.10 2.41 7.07 86.80 0.61 3.02 16 17 C -0.12 -1.59 7.09 31.99 0.23 -1.37 16 18 C -0.12 -1.52 4.43 31.78 0.14 -1.38 16 19 C 0.15 3.37 3.24 45.34 0.15 3.52 16 20 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 21 C 0.03 0.61 4.76 86.30 0.41 1.02 16 22 N -0.53 -10.64 4.66 -895.20 -4.17 -14.82 16 23 C -0.01 -0.08 4.77 86.31 0.41 0.34 16 24 C 0.06 0.80 7.01 72.01 0.50 1.30 16 25 O -0.41 -7.51 10.83 -148.98 -1.61 -9.13 16 26 C 0.07 1.13 7.01 72.02 0.50 1.64 16 27 C 0.01 0.28 5.60 86.32 0.48 0.77 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 30 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 31 H 0.06 2.39 7.17 -2.38 -0.02 2.37 16 32 H 0.03 1.45 7.04 -2.39 -0.02 1.43 16 33 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.91 7.17 -2.38 -0.02 0.89 16 39 H 0.09 0.98 6.54 -2.39 -0.02 0.96 16 40 H 0.04 0.93 7.81 -2.39 -0.02 0.91 16 41 H 0.07 2.31 5.30 -2.39 -0.01 2.30 16 42 H 0.04 0.57 8.13 -2.39 -0.02 0.55 16 43 H 0.12 1.25 3.92 -2.39 -0.01 1.24 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.08 1.76 8.02 -2.39 -0.02 1.74 16 49 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -81.24 384.58 -4.55 -85.80 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.88 Total: 17.22 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.88 Total: -6.78 kcal Atomic # 7 Polarization: -140.91 SS G_CDS: -7.30 Total: -148.21 kcal Atomic # 8 Polarization: -99.04 SS G_CDS: -5.54 Total: -104.58 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Atomic # 16 Polarization: 112.56 SS G_CDS: -0.35 Total: 112.21 kcal Total: -81.24 -4.55 -85.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345236112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.068 kcal (2) G-P(sol) polarization free energy of solvation -81.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds