Wall clock time and date at job start Wed Apr 1 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00129 * 2 1 4 4 C 1.34777 * 119.99525 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 2 1 7 7 H 1.08998 * 109.47585 * 60.27844 * 6 4 2 8 8 C 1.52998 * 109.47092 * 300.27576 * 6 4 2 9 9 C 1.53005 * 109.47342 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.46953 * 60.00128 * 9 8 6 11 11 C 1.52998 * 109.46992 * 300.00086 * 10 9 8 12 12 H 1.09004 * 109.47239 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47555 * 300.00059 * 11 10 9 14 14 S 1.65601 * 120.00219 * 265.00599 * 13 11 10 15 15 O 1.42104 * 106.40367 * 178.53708 * 14 13 11 16 16 O 1.42106 * 106.39925 * 311.45528 * 14 13 11 17 17 N 1.65594 * 107.22196 * 64.99461 * 14 13 11 18 18 C 1.46506 * 119.99894 * 270.00374 * 17 14 13 19 19 C 1.46494 * 120.00094 * 89.99977 * 17 14 13 20 20 C 1.50705 * 109.47000 * 95.00456 * 19 17 14 21 21 H 1.07995 * 120.00175 * 359.97438 * 20 19 17 22 22 C 1.37880 * 119.99654 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00353 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99520 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47122 * 90.00206 * 24 22 20 26 26 H 1.48503 * 109.46885 * 209.99862 * 24 22 20 27 27 H 1.48504 * 109.47206 * 329.99746 * 24 22 20 28 28 C 1.52997 * 109.47441 * 60.00327 * 11 10 9 29 29 H 1.09000 * 109.47193 * 270.00381 * 1 2 3 30 30 H 1.09000 * 109.46889 * 29.99981 * 1 2 3 31 31 H 1.09001 * 109.47460 * 150.00590 * 1 2 3 32 32 H 1.08997 * 109.47115 * 269.99822 * 3 2 1 33 33 H 1.08995 * 109.47364 * 30.00213 * 3 2 1 34 34 H 1.09002 * 109.47090 * 149.99764 * 3 2 1 35 35 H 1.09006 * 109.47458 * 299.99989 * 8 6 4 36 36 H 1.09004 * 109.47239 * 60.00118 * 8 6 4 37 37 H 1.09006 * 109.46726 * 300.00303 * 9 8 6 38 38 H 1.08994 * 109.47101 * 180.02562 * 9 8 6 39 39 H 1.09005 * 109.47125 * 180.02562 * 10 9 8 40 40 H 1.08998 * 109.47408 * 60.00223 * 10 9 8 41 41 H 0.97003 * 119.99953 * 84.99867 * 13 11 10 42 42 H 1.08999 * 109.47056 * 89.99651 * 18 17 14 43 43 H 1.09003 * 109.46951 * 209.99957 * 18 17 14 44 44 H 1.08995 * 109.47358 * 329.99609 * 18 17 14 45 45 H 1.08998 * 109.47349 * 214.99946 * 19 17 14 46 46 H 1.09000 * 109.47414 * 335.00049 * 19 17 14 47 47 H 0.97000 * 119.99792 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.47849 * 179.97438 * 28 11 10 49 49 H 1.08998 * 109.47443 * 59.99604 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5323 -2.2176 0.0005 6 6 3.6457 -1.1673 -0.0057 7 1 4.0129 -0.6553 0.8837 8 6 4.1506 -0.4436 -1.2556 9 6 5.6806 -0.4442 -1.2624 10 6 6.1900 -1.8869 -1.2677 11 6 5.6852 -2.6106 -0.0178 12 1 6.0484 -3.6383 -0.0213 13 7 6.1789 -1.9228 1.1777 14 16 7.5656 -2.4427 1.9188 15 8 7.7919 -1.5615 3.0104 16 8 7.4365 -3.8498 2.0697 17 7 8.8111 -2.1989 0.8550 18 6 9.1815 -3.2526 -0.0930 19 6 9.5423 -0.9295 0.8619 20 6 10.7759 -1.0650 1.7170 21 1 10.9931 -2.0027 2.2066 22 6 11.6265 0.0085 1.8749 23 7 11.3617 1.1506 1.2791 24 14 13.1552 -0.1593 2.9354 25 1 14.2914 -0.6183 2.0968 26 1 13.4856 1.1566 3.5392 27 1 12.9037 -1.1494 4.0133 28 6 4.1552 -2.6100 -0.0111 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 2.3792 1.5833 -1.0276 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5139 35 1 3.7836 -0.9557 -2.1452 36 1 3.7873 0.5841 -1.2521 37 1 6.0480 0.0676 -0.3728 38 1 6.0402 0.0718 -2.1526 39 1 7.2800 -1.8873 -1.2720 40 1 5.8226 -2.3987 -2.1571 41 1 5.6937 -1.1627 1.5352 42 1 8.6120 -3.1291 -1.0142 43 1 10.2471 -3.1854 -0.3128 44 1 8.9612 -4.2271 0.3425 45 1 9.8328 -0.6720 -0.1566 46 1 8.9038 -0.1445 1.2670 47 1 11.9600 1.9059 1.3905 48 1 3.7955 -3.1260 0.8792 49 1 3.7877 -3.1218 -0.9005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408168154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:18 Heat of formation + Delta-G solvation = -113.017596 kcal Electronic energy + Delta-G solvation = -30843.975737 eV Core-core repulsion = 26739.839003 eV Total energy + Delta-G solvation = -4104.136734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.72381 -38.41716 -36.55665 -35.89740 -35.49506 -35.13302 -33.58043 -32.44209 -31.24810 -29.45638 -28.11164 -27.74857 -26.58355 -25.05049 -23.20294 -22.70373 -22.25882 -20.14166 -19.62642 -18.56537 -17.60716 -17.06075 -16.62335 -16.42823 -16.21532 -15.98755 -15.65613 -15.32748 -14.99460 -14.45659 -14.29717 -14.08854 -13.59480 -13.46094 -13.22267 -13.03538 -12.91883 -12.75156 -12.59215 -12.54272 -12.43395 -12.26171 -12.15387 -11.96450 -11.59591 -11.52708 -11.40533 -11.17242 -11.13741 -11.06398 -10.76640 -10.70732 -10.63131 -10.51978 -10.32522 -10.01978 -9.82019 -9.75012 -9.25018 -8.99603 -8.45050 -8.05458 -6.07252 -4.10646 1.26668 2.40479 2.71724 3.31004 3.37481 3.43538 3.54511 4.14404 4.19072 4.44399 4.46432 4.57541 4.71446 4.83896 4.93198 4.98566 5.01085 5.07873 5.11687 5.18588 5.25483 5.26207 5.28642 5.36760 5.44557 5.48776 5.50038 5.61695 5.69295 5.84452 5.88945 5.91825 5.98237 6.11207 6.13009 6.19208 6.24931 6.36978 6.43552 6.56867 7.02674 7.11575 7.26492 7.43235 7.62512 7.90905 7.92380 8.20677 8.91929 9.54635 11.01223 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.003083 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.972254 B = 9081.257644 C = 9610.794442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.519 3.481 5 O -0.538 6.538 6 C -0.106 4.106 7 H 0.098 0.902 8 C -0.121 4.121 9 C -0.114 4.114 10 C -0.145 4.145 11 C 0.154 3.846 12 H 0.093 0.907 13 N -1.128 6.128 14 S 2.781 3.219 15 O -0.966 6.966 16 O -0.999 6.999 17 N -0.994 5.994 18 C 0.091 3.909 19 C 0.260 3.740 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.896 5.896 24 Si 0.896 3.104 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.272 1.272 28 C -0.099 4.099 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.408 0.592 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.263 0.737 48 H 0.077 0.923 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.570 0.087 -8.532 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.358 5.358 3 C -0.069 4.069 4 C 0.307 3.693 5 O -0.415 6.415 6 C -0.128 4.128 7 H 0.116 0.884 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.184 4.184 11 C 0.046 3.954 12 H 0.111 0.889 13 N -0.886 5.886 14 S 2.788 3.212 15 O -0.950 6.950 16 O -0.982 6.982 17 N -0.837 5.837 18 C -0.055 4.055 19 C 0.138 3.862 20 C -0.568 4.568 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.536 5.536 24 Si 0.723 3.277 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.241 0.759 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.667 -0.822 -7.751 20.229 hybrid contribution 0.642 0.785 0.355 1.074 sum -18.025 -0.037 -7.396 19.483 Atomic orbital electron populations 1.21626 0.79371 1.03007 1.01816 1.47762 1.07025 1.06598 1.74454 1.22031 0.97681 0.85137 1.02083 1.20822 0.90292 0.82975 0.75188 1.90690 1.70440 1.31016 1.49337 1.21333 0.90741 0.99619 1.01088 0.88431 1.21835 0.97078 1.00703 0.96237 1.21443 0.93684 0.97105 1.02965 1.22201 1.02409 0.96305 0.97505 1.20735 0.94143 0.96086 0.84418 0.88873 1.56367 1.44743 1.45964 1.41553 1.01955 0.72485 0.73216 0.73535 1.93639 1.84381 1.66633 1.50340 1.93526 1.86635 1.32207 1.85837 1.57573 1.47833 1.25329 1.52984 1.21428 1.02384 0.89990 0.91719 1.19002 0.91321 0.77930 0.97902 1.21515 1.07280 0.98134 1.29833 0.92229 1.24916 0.98247 0.95035 0.95785 1.69911 1.37907 1.02087 1.43646 0.86532 0.82819 0.77587 0.80734 1.20643 1.21095 1.19720 1.21580 0.93810 0.94300 1.04177 0.92814 0.91312 0.90589 0.91914 0.91039 0.90214 0.91481 0.90557 0.91017 0.91342 0.89986 0.91039 0.75852 0.94067 0.90429 0.91616 0.94774 0.94524 0.92749 0.90453 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.44 59.85 0.62 1.24 16 2 N -0.62 -5.40 3.27 -189.52 -0.62 -6.02 16 3 C 0.07 0.42 8.80 59.84 0.53 0.95 16 4 C 0.52 5.83 7.08 -10.98 -0.08 5.76 16 5 O -0.54 -7.96 15.56 5.55 0.09 -7.87 16 6 C -0.11 -1.04 1.54 -91.77 -0.14 -1.18 16 7 H 0.10 0.89 5.77 -51.93 -0.30 0.59 16 8 C -0.12 -1.00 4.84 -26.73 -0.13 -1.13 16 9 C -0.11 -1.11 5.77 -26.73 -0.15 -1.26 16 10 C -0.15 -1.54 5.64 -26.73 -0.15 -1.69 16 11 C 0.15 1.82 3.14 -67.94 -0.21 1.61 16 12 H 0.09 1.14 7.50 -51.93 -0.39 0.75 16 13 N -1.13 -15.78 4.80 -4.89 -0.02 -15.81 16 14 S 2.78 53.43 6.08 -107.50 -0.65 52.78 16 15 O -0.97 -22.66 17.11 -57.17 -0.98 -23.64 16 16 O -1.00 -20.58 16.08 -57.17 -0.92 -21.50 16 17 N -0.99 -19.56 2.89 -123.05 -0.36 -19.92 16 18 C 0.09 1.49 10.44 59.85 0.62 2.11 16 19 C 0.26 6.24 5.08 -5.19 -0.03 6.21 16 20 C -0.53 -14.56 9.38 -34.44 -0.32 -14.88 16 21 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 24 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 C -0.10 -1.10 4.20 -26.73 -0.11 -1.21 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.08 0.66 7.42 -51.93 -0.39 0.27 16 32 H 0.06 0.30 6.94 -51.93 -0.36 -0.06 16 33 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 34 H 0.08 0.45 6.02 -51.93 -0.31 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.51 4.52 -51.93 -0.23 0.28 16 37 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.98 5.53 -51.93 -0.29 0.70 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.41 5.03 6.82 -34.47 -0.23 4.80 16 42 H 0.04 0.54 6.22 -51.93 -0.32 0.22 16 43 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 45 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 46 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 49 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -35.81 387.74 -9.28 -45.10 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.73 Total: 1.09 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.35 Total: -1.83 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -0.26 Total: -66.61 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.81 Total: -53.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.65 Total: 52.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.81 -9.28 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408168154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.919 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds