Wall clock time and date at job start Wed Apr 1 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00129 * 2 1 4 4 C 1.34777 * 119.99525 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 2 1 7 7 H 1.08998 * 109.47585 * 60.27844 * 6 4 2 8 8 C 1.52998 * 109.47092 * 300.27576 * 6 4 2 9 9 C 1.53005 * 109.47342 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.46953 * 60.00128 * 9 8 6 11 11 C 1.52998 * 109.46992 * 300.00086 * 10 9 8 12 12 H 1.09004 * 109.47239 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47555 * 300.00059 * 11 10 9 14 14 S 1.65601 * 120.00219 * 265.00599 * 13 11 10 15 15 O 1.42104 * 106.40367 * 178.53708 * 14 13 11 16 16 O 1.42106 * 106.39925 * 311.45528 * 14 13 11 17 17 N 1.65594 * 107.22196 * 64.99461 * 14 13 11 18 18 C 1.46506 * 119.99894 * 270.00374 * 17 14 13 19 19 C 1.46494 * 120.00094 * 89.99977 * 17 14 13 20 20 C 1.50705 * 109.47000 * 95.00456 * 19 17 14 21 21 H 1.07995 * 120.00175 * 359.97438 * 20 19 17 22 22 C 1.37880 * 119.99654 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00353 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99520 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47122 * 90.00206 * 24 22 20 26 26 H 1.48503 * 109.46885 * 209.99862 * 24 22 20 27 27 H 1.48504 * 109.47206 * 329.99746 * 24 22 20 28 28 C 1.52997 * 109.47441 * 60.00327 * 11 10 9 29 29 H 1.09000 * 109.47193 * 270.00381 * 1 2 3 30 30 H 1.09000 * 109.46889 * 29.99981 * 1 2 3 31 31 H 1.09001 * 109.47460 * 150.00590 * 1 2 3 32 32 H 1.08997 * 109.47115 * 269.99822 * 3 2 1 33 33 H 1.08995 * 109.47364 * 30.00213 * 3 2 1 34 34 H 1.09002 * 109.47090 * 149.99764 * 3 2 1 35 35 H 1.09006 * 109.47458 * 299.99989 * 8 6 4 36 36 H 1.09004 * 109.47239 * 60.00118 * 8 6 4 37 37 H 1.09006 * 109.46726 * 300.00303 * 9 8 6 38 38 H 1.08994 * 109.47101 * 180.02562 * 9 8 6 39 39 H 1.09005 * 109.47125 * 180.02562 * 10 9 8 40 40 H 1.08998 * 109.47408 * 60.00223 * 10 9 8 41 41 H 0.97003 * 119.99953 * 84.99867 * 13 11 10 42 42 H 1.08999 * 109.47056 * 89.99651 * 18 17 14 43 43 H 1.09003 * 109.46951 * 209.99957 * 18 17 14 44 44 H 1.08995 * 109.47358 * 329.99609 * 18 17 14 45 45 H 1.08998 * 109.47349 * 214.99946 * 19 17 14 46 46 H 1.09000 * 109.47414 * 335.00049 * 19 17 14 47 47 H 0.97000 * 119.99792 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.47849 * 179.97438 * 28 11 10 49 49 H 1.08998 * 109.47443 * 59.99604 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5323 -2.2176 0.0005 6 6 3.6457 -1.1673 -0.0057 7 1 4.0129 -0.6553 0.8837 8 6 4.1506 -0.4436 -1.2556 9 6 5.6806 -0.4442 -1.2624 10 6 6.1900 -1.8869 -1.2677 11 6 5.6852 -2.6106 -0.0178 12 1 6.0484 -3.6383 -0.0213 13 7 6.1789 -1.9228 1.1777 14 16 7.5656 -2.4427 1.9188 15 8 7.7919 -1.5615 3.0104 16 8 7.4365 -3.8498 2.0697 17 7 8.8111 -2.1989 0.8550 18 6 9.1815 -3.2526 -0.0930 19 6 9.5423 -0.9295 0.8619 20 6 10.7759 -1.0650 1.7170 21 1 10.9931 -2.0027 2.2066 22 6 11.6265 0.0085 1.8749 23 7 11.3617 1.1506 1.2791 24 14 13.1552 -0.1593 2.9354 25 1 14.2914 -0.6183 2.0968 26 1 13.4856 1.1566 3.5392 27 1 12.9037 -1.1494 4.0133 28 6 4.1552 -2.6100 -0.0111 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 2.3792 1.5833 -1.0276 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5139 35 1 3.7836 -0.9557 -2.1452 36 1 3.7873 0.5841 -1.2521 37 1 6.0480 0.0676 -0.3728 38 1 6.0402 0.0718 -2.1526 39 1 7.2800 -1.8873 -1.2720 40 1 5.8226 -2.3987 -2.1571 41 1 5.6937 -1.1627 1.5352 42 1 8.6120 -3.1291 -1.0142 43 1 10.2471 -3.1854 -0.3128 44 1 8.9612 -4.2271 0.3425 45 1 9.8328 -0.6720 -0.1566 46 1 8.9038 -0.1445 1.2670 47 1 11.9600 1.9059 1.3905 48 1 3.7955 -3.1260 0.8792 49 1 3.7877 -3.1218 -0.9005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408168154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:17 Heat of formation + Delta-G solvation = -139.572704 kcal Electronic energy + Delta-G solvation = -30845.127253 eV Core-core repulsion = 26739.839003 eV Total energy + Delta-G solvation = -4105.288250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.54394 -39.33191 -38.21553 -37.16931 -36.81829 -36.66008 -34.59652 -34.45526 -32.07693 -30.39983 -29.61641 -28.68144 -27.25877 -26.72585 -24.16788 -23.97823 -23.51577 -21.17632 -20.55668 -19.71766 -18.99934 -18.45369 -18.28938 -17.79217 -17.15375 -17.10200 -16.73242 -16.54319 -16.07217 -15.95716 -15.37929 -15.02842 -14.94875 -14.79510 -14.26675 -14.04855 -13.93933 -13.78601 -13.58747 -13.53271 -13.50230 -13.28194 -13.27552 -13.16064 -13.05069 -13.00210 -12.90213 -12.67071 -12.50684 -12.43520 -12.32655 -12.27546 -11.93902 -11.73250 -11.61789 -11.46022 -11.16941 -10.67684 -10.56236 -10.34363 -9.72798 -9.67218 -8.17696 -6.28180 -0.27179 1.39722 1.42013 1.52216 1.57431 2.04729 2.10509 2.42355 2.69148 3.13468 3.39006 3.50750 3.66993 3.81061 3.96172 4.15404 4.17295 4.24890 4.26291 4.39628 4.42641 4.48489 4.51090 4.57026 4.63420 4.68812 4.76255 4.80319 4.87167 4.90845 4.93122 5.03849 5.10704 5.14451 5.18203 5.24152 5.27689 5.35780 5.45410 5.50725 5.52818 5.57623 5.74158 5.91393 6.13711 6.20299 6.31980 6.79946 7.12875 7.40241 8.89331 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.003083 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.972254 B = 9081.257644 C = 9610.794442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.621 5.621 3 C 0.065 3.935 4 C 0.513 3.487 5 O -0.583 6.583 6 C -0.104 4.104 7 H 0.103 0.897 8 C -0.111 4.111 9 C -0.114 4.114 10 C -0.144 4.144 11 C 0.151 3.849 12 H 0.091 0.909 13 N -1.111 6.111 14 S 2.796 3.204 15 O -1.013 7.013 16 O -1.014 7.014 17 N -0.998 5.998 18 C 0.085 3.915 19 C 0.278 3.722 20 C -0.550 4.550 21 H 0.048 0.952 22 C 0.015 3.985 23 N -0.921 5.921 24 Si 0.951 3.049 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.278 1.278 28 C -0.094 4.094 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.417 0.583 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.019 0.981 47 H 0.267 0.733 48 H 0.060 0.940 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 0.954 -9.791 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C -0.077 4.077 4 C 0.302 3.698 5 O -0.464 6.464 6 C -0.126 4.126 7 H 0.121 0.879 8 C -0.149 4.149 9 C -0.152 4.152 10 C -0.183 4.183 11 C 0.044 3.956 12 H 0.109 0.891 13 N -0.875 5.875 14 S 2.804 3.196 15 O -0.997 6.997 16 O -0.997 6.997 17 N -0.840 5.840 18 C -0.060 4.060 19 C 0.154 3.846 20 C -0.589 4.589 21 H 0.066 0.934 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.776 3.224 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.203 1.203 28 C -0.133 4.133 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.164 0.068 -9.021 21.182 hybrid contribution 0.693 0.511 0.718 1.121 sum -18.472 0.579 -8.303 20.260 Atomic orbital electron populations 1.21741 0.78683 1.03604 1.02136 1.47898 1.07733 1.06877 1.72847 1.22279 0.97829 0.84109 1.03489 1.21041 0.90762 0.83122 0.74874 1.90669 1.71252 1.32679 1.51754 1.21324 0.90066 0.98929 1.02242 0.87913 1.21791 0.95912 1.01745 0.95410 1.21439 0.94581 0.96314 1.02825 1.22206 1.01600 0.97097 0.97429 1.20951 0.94718 0.95976 0.83922 0.89129 1.55908 1.42931 1.46380 1.42234 1.01218 0.73017 0.72383 0.72955 1.93570 1.85438 1.67670 1.53003 1.93501 1.87041 1.33066 1.86113 1.57406 1.48155 1.24710 1.53687 1.21650 1.02659 0.89157 0.92569 1.18550 0.90087 0.79197 0.96720 1.21868 1.08845 0.97796 1.30406 0.93404 1.25652 1.00974 0.94875 0.96934 1.69983 1.38937 1.02573 1.44545 0.85674 0.79977 0.77582 0.79176 1.19157 1.20382 1.20275 1.21496 0.92847 0.95322 1.03677 0.92660 0.88327 0.92358 0.90228 0.89161 0.90125 0.91012 0.88539 0.92352 0.90329 0.91261 0.88767 0.74658 0.90420 0.91140 0.91089 0.95030 0.96339 0.92427 0.92154 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.44 127.77 1.33 2.39 16 2 N -0.62 -9.59 3.27 -871.91 -2.85 -12.45 16 3 C 0.06 0.56 8.80 127.77 1.12 1.68 16 4 C 0.51 11.02 7.08 87.66 0.62 11.64 16 5 O -0.58 -17.28 15.56 -3.04 -0.05 -17.33 16 6 C -0.10 -1.88 1.54 -11.54 -0.02 -1.90 16 7 H 0.10 1.73 5.77 -2.39 -0.01 1.72 16 8 C -0.11 -1.55 4.84 30.60 0.15 -1.40 16 9 C -0.11 -1.95 5.77 30.59 0.18 -1.78 16 10 C -0.14 -2.76 5.64 30.59 0.17 -2.58 16 11 C 0.15 3.40 3.14 44.99 0.14 3.54 16 12 H 0.09 2.11 7.50 -2.38 -0.02 2.09 16 13 N -1.11 -30.63 4.80 -169.40 -0.81 -31.45 16 14 S 2.80 108.13 6.08 -56.49 -0.34 107.79 16 15 O -1.01 -48.58 17.11 -128.00 -2.19 -50.77 16 16 O -1.01 -41.75 16.08 -128.00 -2.06 -43.81 16 17 N -1.00 -39.20 2.89 -543.22 -1.57 -40.77 16 18 C 0.08 2.69 10.44 127.77 1.33 4.02 16 19 C 0.28 13.45 5.08 85.64 0.43 13.89 16 20 C -0.55 -30.62 9.38 25.60 0.24 -30.38 16 21 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 22 C 0.02 0.86 5.46 84.66 0.46 1.32 16 23 N -0.92 -52.57 13.29 21.45 0.28 -52.29 16 24 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 28 C -0.09 -1.99 4.20 30.59 0.13 -1.86 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.68 8.07 -2.39 -0.02 0.67 16 31 H 0.06 0.99 7.42 -2.39 -0.02 0.97 16 32 H 0.08 0.46 6.94 -2.39 -0.02 0.45 16 33 H 0.09 0.48 8.07 -2.39 -0.02 0.46 16 34 H 0.08 0.71 6.02 -2.39 -0.01 0.69 16 35 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.10 0.98 4.52 -2.38 -0.01 0.96 16 37 H 0.06 1.17 7.45 -2.38 -0.02 1.15 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.53 5.53 -2.38 -0.01 1.51 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.42 10.12 6.82 -96.74 -0.66 9.46 16 42 H 0.08 1.88 6.22 -2.39 -0.01 1.87 16 43 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 44 H 0.07 2.17 7.02 -2.39 -0.02 2.15 16 45 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 46 H 0.02 0.96 7.61 -2.39 -0.02 0.94 16 47 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 49 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -77.82 387.74 -0.97 -78.78 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.30 Total: 17.43 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.30 Total: -1.43 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -4.95 Total: -136.95 kcal Atomic # 8 Polarization: -107.61 SS G_CDS: -4.30 Total: -111.90 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 108.13 SS G_CDS: -0.34 Total: 107.79 kcal Total: -77.82 -0.97 -78.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408168154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.789 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds