Wall clock time and date at job start Wed Apr 1 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00052 * 2 1 4 4 C 1.50702 * 109.46836 * 274.99672 * 3 2 1 5 5 H 1.08006 * 120.00036 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00210 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99560 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00158 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47354 * 60.00001 * 8 6 4 10 10 H 1.48506 * 109.47005 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47027 * 299.99480 * 8 6 4 12 12 S 1.65595 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40373 * 336.46392 * 12 2 1 14 14 O 1.42099 * 106.40433 * 203.54277 * 12 2 1 15 15 N 1.65605 * 107.21825 * 90.00603 * 12 2 1 16 16 C 1.47421 * 125.64985 * 90.02204 * 15 12 2 17 17 C 1.54917 * 104.92673 * 204.15892 * 16 15 12 18 18 C 1.55161 * 101.58076 * 322.93473 * 17 16 15 19 19 H 1.08997 * 110.71949 * 276.96175 * 18 17 16 20 20 C 1.53001 * 110.71923 * 153.86674 * 18 17 16 21 21 N 1.46897 * 109.47163 * 64.46011 * 20 18 17 22 22 C 1.47010 * 111.00011 * 199.27990 * 21 20 18 23 23 C 1.53106 * 109.25954 * 177.60394 * 22 21 20 24 24 O 1.43024 * 109.25330 * 56.85024 * 23 22 21 25 25 C 1.43013 * 113.73627 * 301.32766 * 24 23 22 26 26 C 1.47016 * 110.99952 * 75.64319 * 21 20 18 27 27 C 1.47290 * 125.78800 * 270.02695 * 15 12 2 28 28 H 1.09002 * 109.47187 * 270.00193 * 1 2 3 29 29 H 1.08999 * 109.46938 * 30.00525 * 1 2 3 30 30 H 1.08998 * 109.46940 * 150.00218 * 1 2 3 31 31 H 1.08995 * 109.47043 * 34.99511 * 3 2 1 32 32 H 1.08997 * 109.47342 * 154.99901 * 3 2 1 33 33 H 0.97006 * 119.99997 * 180.02562 * 7 6 4 34 34 H 1.08993 * 110.36963 * 85.26633 * 16 15 12 35 35 H 1.08995 * 110.36371 * 323.04659 * 16 15 12 36 36 H 1.08997 * 111.00700 * 81.00947 * 17 16 15 37 37 H 1.08997 * 111.00134 * 204.86364 * 17 16 15 38 38 H 1.09001 * 109.46982 * 184.46119 * 20 18 17 39 39 H 1.09001 * 109.47140 * 304.46042 * 20 18 17 40 40 H 1.08992 * 109.51195 * 297.54111 * 22 21 20 41 41 H 1.09003 * 109.50985 * 57.67697 * 22 21 20 42 42 H 1.08992 * 109.50813 * 296.91761 * 23 22 21 43 43 H 1.09000 * 109.50815 * 176.78067 * 23 22 21 44 44 H 1.08999 * 109.50892 * 298.73857 * 25 24 23 45 45 H 1.09005 * 109.50748 * 178.60424 * 25 24 23 46 46 H 1.09001 * 109.50616 * 302.32651 * 26 21 20 47 47 H 1.08993 * 109.50276 * 62.46217 * 26 21 20 48 48 H 1.09002 * 109.86137 * 59.49799 * 27 15 12 49 49 H 1.09002 * 109.87478 * 298.35374 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9290 1.1933 -2.2333 6 6 3.0007 2.9502 -1.6666 7 7 3.5035 3.6468 -0.6708 8 14 3.1785 3.5664 -3.4210 9 1 1.8320 3.7730 -4.0120 10 1 3.9212 4.8524 -3.4211 11 1 3.9235 2.5641 -4.2245 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5454 14 8 3.5759 -1.1566 0.5450 15 7 2.5382 -1.8593 -1.5810 16 6 3.7031 -1.4813 -2.4016 17 6 3.2009 -1.5548 -3.8653 18 6 2.2579 -2.7858 -3.8096 19 1 2.8251 -3.7110 -3.9115 20 6 1.1804 -2.6917 -4.8917 21 7 1.8112 -2.7493 -6.2171 22 6 0.9131 -2.2160 -7.2517 23 6 1.6305 -2.2393 -8.6041 24 8 2.0536 -3.5752 -8.8905 25 6 2.9301 -4.1255 -7.9035 26 6 2.2260 -4.1213 -6.5440 27 6 1.6307 -2.6773 -2.4037 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6502 2.0043 0.5893 32 1 3.1858 1.1177 0.4343 33 1 3.9670 4.4805 -0.8474 34 1 4.5213 -2.1843 -2.2456 35 1 4.0237 -0.4677 -2.1611 36 1 2.6510 -0.6534 -4.1355 37 1 4.0280 -1.7272 -4.5539 38 1 0.4840 -3.5233 -4.7843 39 1 0.6412 -1.7502 -4.7866 40 1 0.0146 -2.8306 -7.3057 41 1 0.6392 -1.1908 -7.0027 42 1 2.4994 -1.5825 -8.5665 43 1 0.9490 -1.8984 -9.3835 44 1 3.8369 -3.5234 -7.8456 45 1 3.1887 -5.1488 -8.1762 46 1 2.9104 -4.4868 -5.7785 47 1 1.3484 -4.7663 -6.5867 48 1 0.6550 -2.1959 -2.4692 49 1 1.5278 -3.6703 -1.9661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408239261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:56 Heat of formation + Delta-G solvation = -108.842191 kcal Electronic energy + Delta-G solvation = -30723.410232 eV Core-core repulsion = 26619.454557 eV Total energy + Delta-G solvation = -4103.955675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.91122 -38.34181 -36.63758 -35.81028 -35.46472 -35.19773 -32.49268 -31.62095 -31.29891 -29.21112 -27.80140 -27.50018 -25.07965 -24.31295 -23.99943 -22.39623 -21.83369 -20.75147 -20.03921 -18.41804 -17.28338 -17.04728 -16.74963 -16.38796 -16.29566 -15.84493 -15.36869 -15.27532 -15.19878 -14.77735 -14.53911 -13.96270 -13.80069 -13.52184 -13.33370 -13.21501 -12.99478 -12.63072 -12.50169 -12.31769 -12.17049 -12.08162 -11.69083 -11.65978 -11.53040 -11.37882 -11.17965 -11.14801 -11.12833 -11.02659 -10.85350 -10.76571 -10.71550 -10.52247 -10.35101 -10.12054 -9.89955 -9.79246 -8.63269 -8.59822 -8.49658 -8.03370 -6.11979 -4.18731 1.24874 3.24321 3.30522 3.30676 3.42280 3.54052 3.63717 4.15517 4.34956 4.54996 4.63157 4.66431 4.70156 4.84821 4.88837 4.98916 4.99856 5.13057 5.22057 5.25275 5.35613 5.37312 5.44887 5.50872 5.52917 5.57259 5.61470 5.62969 5.70612 5.72249 5.90887 6.05861 6.11638 6.16300 6.23320 6.30167 6.49868 6.54844 6.58849 6.70867 6.74502 6.82130 6.87312 7.33299 7.43474 7.63585 7.84966 8.14525 8.86147 9.47123 10.96030 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.003975 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.604722 B = 7042.149541 C = 8845.162559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.273 1.273 12 S 2.801 3.199 13 O -0.999 6.999 14 O -0.974 6.974 15 N -1.014 6.014 16 C 0.120 3.880 17 C -0.106 4.106 18 C -0.092 4.092 19 H 0.080 0.920 20 C 0.065 3.935 21 N -0.533 5.533 22 C 0.018 3.982 23 C 0.064 3.936 24 O -0.389 6.389 25 C 0.063 3.937 26 C 0.017 3.983 27 C 0.132 3.868 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.060 0.940 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -13.350 -12.583 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.838 5.838 3 C 0.122 3.878 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.198 1.198 12 S 2.810 3.190 13 O -0.983 6.983 14 O -0.958 6.958 15 N -0.853 5.853 16 C -0.005 4.005 17 C -0.145 4.145 18 C -0.112 4.112 19 H 0.098 0.902 20 C -0.063 4.063 21 N -0.258 5.258 22 C -0.110 4.110 23 C -0.013 4.013 24 O -0.307 6.307 25 C -0.014 4.014 26 C -0.112 4.112 27 C 0.005 3.995 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.106 0.894 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.683 -13.431 -11.802 18.254 hybrid contribution -0.760 0.426 -1.036 1.353 sum -4.442 -13.005 -12.837 18.806 Atomic orbital electron populations 1.21199 0.80229 1.01907 1.00558 1.57701 1.14152 1.23573 1.88411 1.19217 0.92149 0.78883 0.97562 1.21507 1.36574 1.06802 0.92876 0.91917 1.24950 0.95220 0.96513 0.97131 1.69928 1.36695 1.15184 1.30978 0.86656 0.78217 0.78291 0.84851 1.20352 1.21273 1.19834 1.01306 0.73029 0.72535 0.72108 1.93525 1.67454 1.60561 1.76752 1.93575 1.40882 1.85252 1.76098 1.59154 1.30373 1.65239 1.30545 1.22006 0.87069 1.01560 0.89906 1.22649 0.98921 0.97466 0.95456 1.22184 0.96668 0.99912 0.92424 0.90183 1.22150 0.95073 1.01631 0.87449 1.62119 1.41096 1.20557 1.01984 1.22796 0.94490 1.01262 0.92469 1.22673 0.98981 0.84077 0.95613 1.87972 1.66308 1.29592 1.46841 1.22666 0.92551 0.99276 0.86867 1.22835 1.00207 0.89669 0.98446 1.21588 0.92853 0.94709 0.90367 0.93788 0.90880 0.93105 0.94506 0.93162 0.92534 0.92427 0.89018 0.90360 0.90381 0.94300 0.90069 0.94078 0.89347 0.92062 0.88562 0.92125 0.88642 0.89369 0.94080 0.92151 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 10.31 59.85 0.62 2.48 16 2 N -1.00 -20.78 3.23 -123.05 -0.40 -21.17 16 3 C 0.24 6.04 5.41 -5.19 -0.03 6.01 16 4 C -0.54 -13.75 9.35 -34.44 -0.32 -14.08 16 5 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 8 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 S 2.80 57.01 6.32 -107.50 -0.68 56.33 16 13 O -1.00 -20.83 16.80 -57.17 -0.96 -21.79 16 14 O -0.97 -23.02 16.28 -57.17 -0.93 -23.95 16 15 N -1.01 -17.26 3.77 -111.22 -0.42 -17.68 16 16 C 0.12 1.94 6.98 -2.53 -0.02 1.93 16 17 C -0.11 -1.42 6.31 -24.58 -0.16 -1.58 16 18 C -0.09 -1.04 2.98 -88.78 -0.26 -1.30 16 19 H 0.08 0.82 6.93 -51.93 -0.36 0.46 16 20 C 0.06 0.66 4.30 -3.83 -0.02 0.64 16 21 N -0.53 -5.25 4.42 -234.31 -1.04 -6.29 16 22 C 0.02 0.16 5.60 -3.71 -0.02 0.14 16 23 C 0.06 0.56 7.01 37.21 0.26 0.82 16 24 O -0.39 -4.02 10.83 -35.23 -0.38 -4.40 16 25 C 0.06 0.54 7.01 37.21 0.26 0.80 16 26 C 0.02 0.14 5.47 -3.71 -0.02 0.12 16 27 C 0.13 1.78 6.61 -2.92 -0.02 1.76 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 31 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.75 8.11 -51.93 -0.42 1.33 16 36 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.36 7.99 -51.93 -0.42 -0.05 16 39 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.78 8.02 -51.93 -0.42 0.36 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.70 6.83 -51.93 -0.35 0.34 16 47 H 0.04 0.36 8.13 -51.93 -0.42 -0.06 16 48 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -31.95 398.59 -11.48 -43.43 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.57 Total: -0.67 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.18 Total: -0.62 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.12 Total: -69.55 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.27 Total: -50.15 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 57.01 SS G_CDS: -0.68 Total: 56.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.95 -11.48 -43.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408239261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.409 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds