Wall clock time and date at job start Wed Apr 1 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00052 * 2 1 4 4 C 1.50702 * 109.46836 * 274.99672 * 3 2 1 5 5 H 1.08006 * 120.00036 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00210 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99560 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00158 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47354 * 60.00001 * 8 6 4 10 10 H 1.48506 * 109.47005 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47027 * 299.99480 * 8 6 4 12 12 S 1.65595 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40373 * 336.46392 * 12 2 1 14 14 O 1.42099 * 106.40433 * 203.54277 * 12 2 1 15 15 N 1.65605 * 107.21825 * 90.00603 * 12 2 1 16 16 C 1.47421 * 125.64985 * 90.02204 * 15 12 2 17 17 C 1.54917 * 104.92673 * 204.15892 * 16 15 12 18 18 C 1.55161 * 101.58076 * 322.93473 * 17 16 15 19 19 H 1.08997 * 110.71949 * 276.96175 * 18 17 16 20 20 C 1.53001 * 110.71923 * 153.86674 * 18 17 16 21 21 N 1.46897 * 109.47163 * 64.46011 * 20 18 17 22 22 C 1.47010 * 111.00011 * 199.27990 * 21 20 18 23 23 C 1.53106 * 109.25954 * 177.60394 * 22 21 20 24 24 O 1.43024 * 109.25330 * 56.85024 * 23 22 21 25 25 C 1.43013 * 113.73627 * 301.32766 * 24 23 22 26 26 C 1.47016 * 110.99952 * 75.64319 * 21 20 18 27 27 C 1.47290 * 125.78800 * 270.02695 * 15 12 2 28 28 H 1.09002 * 109.47187 * 270.00193 * 1 2 3 29 29 H 1.08999 * 109.46938 * 30.00525 * 1 2 3 30 30 H 1.08998 * 109.46940 * 150.00218 * 1 2 3 31 31 H 1.08995 * 109.47043 * 34.99511 * 3 2 1 32 32 H 1.08997 * 109.47342 * 154.99901 * 3 2 1 33 33 H 0.97006 * 119.99997 * 180.02562 * 7 6 4 34 34 H 1.08993 * 110.36963 * 85.26633 * 16 15 12 35 35 H 1.08995 * 110.36371 * 323.04659 * 16 15 12 36 36 H 1.08997 * 111.00700 * 81.00947 * 17 16 15 37 37 H 1.08997 * 111.00134 * 204.86364 * 17 16 15 38 38 H 1.09001 * 109.46982 * 184.46119 * 20 18 17 39 39 H 1.09001 * 109.47140 * 304.46042 * 20 18 17 40 40 H 1.08992 * 109.51195 * 297.54111 * 22 21 20 41 41 H 1.09003 * 109.50985 * 57.67697 * 22 21 20 42 42 H 1.08992 * 109.50813 * 296.91761 * 23 22 21 43 43 H 1.09000 * 109.50815 * 176.78067 * 23 22 21 44 44 H 1.08999 * 109.50892 * 298.73857 * 25 24 23 45 45 H 1.09005 * 109.50748 * 178.60424 * 25 24 23 46 46 H 1.09001 * 109.50616 * 302.32651 * 26 21 20 47 47 H 1.08993 * 109.50276 * 62.46217 * 26 21 20 48 48 H 1.09002 * 109.86137 * 59.49799 * 27 15 12 49 49 H 1.09002 * 109.87478 * 298.35374 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9290 1.1933 -2.2333 6 6 3.0007 2.9502 -1.6666 7 7 3.5035 3.6468 -0.6708 8 14 3.1785 3.5664 -3.4210 9 1 1.8320 3.7730 -4.0120 10 1 3.9212 4.8524 -3.4211 11 1 3.9235 2.5641 -4.2245 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5454 14 8 3.5759 -1.1566 0.5450 15 7 2.5382 -1.8593 -1.5810 16 6 3.7031 -1.4813 -2.4016 17 6 3.2009 -1.5548 -3.8653 18 6 2.2579 -2.7858 -3.8096 19 1 2.8251 -3.7110 -3.9115 20 6 1.1804 -2.6917 -4.8917 21 7 1.8112 -2.7493 -6.2171 22 6 0.9131 -2.2160 -7.2517 23 6 1.6305 -2.2393 -8.6041 24 8 2.0536 -3.5752 -8.8905 25 6 2.9301 -4.1255 -7.9035 26 6 2.2260 -4.1213 -6.5440 27 6 1.6307 -2.6773 -2.4037 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6502 2.0043 0.5893 32 1 3.1858 1.1177 0.4343 33 1 3.9670 4.4805 -0.8474 34 1 4.5213 -2.1843 -2.2456 35 1 4.0237 -0.4677 -2.1611 36 1 2.6510 -0.6534 -4.1355 37 1 4.0280 -1.7272 -4.5539 38 1 0.4840 -3.5233 -4.7843 39 1 0.6412 -1.7502 -4.7866 40 1 0.0146 -2.8306 -7.3057 41 1 0.6392 -1.1908 -7.0027 42 1 2.4994 -1.5825 -8.5665 43 1 0.9490 -1.8984 -9.3835 44 1 3.8369 -3.5234 -7.8456 45 1 3.1887 -5.1488 -8.1762 46 1 2.9104 -4.4868 -5.7785 47 1 1.3484 -4.7663 -6.5867 48 1 0.6550 -2.1959 -2.4692 49 1 1.5278 -3.6703 -1.9661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408239261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:55 Heat of formation + Delta-G solvation = -132.825061 kcal Electronic energy + Delta-G solvation = -30724.450208 eV Core-core repulsion = 26619.454557 eV Total energy + Delta-G solvation = -4104.995650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65373 -39.38313 -38.34583 -37.21039 -36.92299 -36.62738 -34.47117 -32.56905 -32.03184 -30.37126 -29.63894 -28.35336 -26.77808 -24.99674 -24.86156 -24.20348 -23.15103 -21.48775 -20.94256 -19.94095 -18.85922 -18.64190 -18.15933 -17.72042 -17.21156 -17.04868 -16.57805 -16.35189 -16.03542 -15.91905 -15.60538 -15.32393 -14.99195 -14.75061 -14.65100 -14.49996 -14.17042 -14.05155 -13.95365 -13.63692 -13.38455 -13.35250 -13.24396 -13.00716 -12.91281 -12.85588 -12.56720 -12.44322 -12.36861 -12.28813 -12.20800 -11.98942 -11.92996 -11.84594 -11.71629 -11.53302 -11.28791 -10.60580 -10.56257 -9.97886 -9.73186 -9.31142 -8.15335 -6.29178 -0.35559 1.44745 1.46576 1.53775 1.97702 2.43954 2.57146 2.73007 3.00048 3.16503 3.28136 3.69910 3.78301 3.88503 3.99509 4.05182 4.08394 4.24989 4.28626 4.35930 4.41872 4.47673 4.54140 4.59956 4.67263 4.68836 4.75338 4.75961 4.79178 4.81122 4.87125 4.94578 5.01190 5.02551 5.07708 5.13385 5.16197 5.23039 5.27662 5.42892 5.48407 5.56077 5.76286 5.94244 6.01406 6.03530 6.11072 6.22109 6.82556 7.41024 8.92897 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.003975 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.604722 B = 7042.149541 C = 8845.162559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.004 6.004 3 C 0.259 3.741 4 C -0.536 4.536 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.931 5.931 8 Si 0.957 3.043 9 H -0.267 1.267 10 H -0.291 1.291 11 H -0.261 1.261 12 S 2.813 3.187 13 O -1.003 7.003 14 O -1.014 7.014 15 N -1.014 6.014 16 C 0.114 3.886 17 C -0.096 4.096 18 C -0.077 4.077 19 H 0.099 0.901 20 C 0.070 3.930 21 N -0.543 5.543 22 C 0.020 3.980 23 C 0.063 3.937 24 O -0.406 6.406 25 C 0.061 3.939 26 C 0.018 3.982 27 C 0.121 3.879 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.041 0.959 48 H 0.069 0.931 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 -14.909 -15.009 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.845 5.845 3 C 0.135 3.865 4 C -0.575 4.575 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.570 5.570 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.216 1.216 11 H -0.185 1.185 12 S 2.823 3.177 13 O -0.987 6.987 14 O -0.998 6.998 15 N -0.856 5.856 16 C -0.011 4.011 17 C -0.136 4.136 18 C -0.097 4.097 19 H 0.117 0.883 20 C -0.058 4.058 21 N -0.268 5.268 22 C -0.108 4.108 23 C -0.014 4.014 24 O -0.325 6.325 25 C -0.016 4.016 26 C -0.110 4.110 27 C -0.004 4.004 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.076 0.924 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.700 -15.017 -14.226 21.213 hybrid contribution -0.468 0.843 -0.258 0.998 sum -5.168 -14.174 -14.484 20.914 Atomic orbital electron populations 1.21439 0.78061 1.03249 1.01818 1.57624 1.15655 1.22210 1.88989 1.18765 0.90676 0.80087 0.96977 1.21745 1.35860 1.06656 0.93254 0.90925 1.25803 0.94921 0.96831 1.01154 1.70070 1.37931 1.15723 1.33323 0.85625 0.78637 0.77615 0.79994 1.19171 1.21638 1.18510 1.00704 0.72061 0.72213 0.72739 1.93508 1.67353 1.60338 1.77510 1.93519 1.42895 1.85745 1.77673 1.58884 1.31398 1.65419 1.29864 1.22110 0.87431 0.99913 0.91640 1.22563 0.99670 0.97903 0.93419 1.22119 0.96530 0.99572 0.91474 0.88305 1.22055 0.94640 1.01892 0.87225 1.62103 1.41352 1.21409 1.01954 1.22789 0.94396 1.01293 0.92368 1.22751 0.99097 0.83547 0.96014 1.87951 1.66685 1.30199 1.47705 1.22792 0.92112 1.00101 0.86590 1.22865 1.00365 0.88987 0.98759 1.21919 0.92680 0.94732 0.91095 0.92666 0.90730 0.90522 0.96326 0.96634 0.92633 0.90967 0.92627 0.91934 0.88792 0.92994 0.90687 0.94031 0.89239 0.92527 0.87142 0.92397 0.86998 0.88385 0.94104 0.91305 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.34 10.31 127.77 1.32 4.66 16 2 N -1.00 -42.08 3.23 -543.23 -1.75 -43.83 16 3 C 0.26 13.23 5.41 85.63 0.46 13.69 16 4 C -0.54 -27.66 9.35 25.60 0.24 -27.42 16 5 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 6 C 0.01 0.65 5.46 84.65 0.46 1.12 16 7 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 8 Si 0.96 41.29 29.54 68.60 2.03 43.32 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 12 S 2.81 114.46 6.32 -56.49 -0.36 114.11 16 13 O -1.00 -40.75 16.80 -128.00 -2.15 -42.90 16 14 O -1.01 -49.40 16.28 -128.00 -2.08 -51.49 16 15 N -1.01 -33.41 3.77 -505.78 -1.90 -35.32 16 16 C 0.11 3.62 6.98 86.86 0.61 4.23 16 17 C -0.10 -2.39 6.31 31.99 0.20 -2.18 16 18 C -0.08 -1.50 2.98 -9.60 -0.03 -1.53 16 19 H 0.10 1.62 6.93 -2.39 -0.02 1.60 16 20 C 0.07 1.19 4.30 86.30 0.37 1.56 16 21 N -0.54 -9.17 4.42 -895.21 -3.96 -13.13 16 22 C 0.02 0.31 5.60 86.32 0.48 0.79 16 23 C 0.06 0.98 7.01 72.02 0.50 1.48 16 24 O -0.41 -7.55 10.83 -148.98 -1.61 -9.17 16 25 C 0.06 0.88 7.01 72.02 0.50 1.38 16 26 C 0.02 0.26 5.47 86.32 0.47 0.73 16 27 C 0.12 2.95 6.61 86.68 0.57 3.52 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 30 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 31 H 0.02 1.00 8.11 -2.39 -0.02 0.99 16 32 H 0.02 0.90 6.91 -2.39 -0.02 0.89 16 33 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 2.17 8.11 -2.39 -0.02 2.15 16 36 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 0.78 7.99 -2.39 -0.02 0.76 16 39 H 0.07 1.39 7.86 -2.39 -0.02 1.37 16 40 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 41 H 0.09 1.38 8.02 -2.39 -0.02 1.36 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.10 1.20 6.83 -2.39 -0.02 1.18 16 47 H 0.04 0.60 8.13 -2.39 -0.02 0.58 16 48 H 0.07 1.57 7.82 -2.39 -0.02 1.55 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.35 398.59 -4.43 -73.78 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.91 Total: 16.22 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 6.17 Total: 2.03 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -7.33 Total: -145.90 kcal Atomic # 8 Polarization: -97.71 SS G_CDS: -5.85 Total: -103.56 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 114.46 SS G_CDS: -0.36 Total: 114.11 kcal Total: -69.35 -4.43 -73.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408239261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.047 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds