Wall clock time and date at job start Wed Apr 1 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99999 * 2 1 4 4 C 1.50701 * 109.46992 * 85.00120 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 S 1.65593 * 119.99605 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40784 * 23.53826 * 12 2 1 14 14 O 1.42105 * 106.40278 * 156.45824 * 12 2 1 15 15 N 1.65598 * 107.21993 * 269.99784 * 12 2 1 16 16 C 1.47078 * 120.88135 * 269.72651 * 15 12 2 17 17 C 1.53698 * 108.27941 * 128.75484 * 16 15 12 18 18 N 1.46897 * 109.25714 * 54.07702 * 17 16 15 19 19 C 1.46900 * 110.99703 * 172.60714 * 18 17 16 20 20 C 1.53180 * 109.54166 * 59.12940 * 19 18 17 21 21 C 1.53104 * 109.15908 * 183.23544 * 20 19 18 22 22 O 1.42900 * 109.48255 * 57.47567 * 21 20 19 23 23 C 1.42907 * 114.09952 * 298.88732 * 22 21 20 24 24 C 1.53096 * 109.41387 * 61.16028 * 23 22 21 25 25 C 1.46894 * 111.27256 * 296.76024 * 18 17 16 26 26 C 1.47082 * 120.88227 * 90.00099 * 15 12 2 27 27 H 1.09000 * 109.47587 * 89.99812 * 1 2 3 28 28 H 1.08997 * 109.47205 * 209.99963 * 1 2 3 29 29 H 1.09003 * 109.46728 * 329.99785 * 1 2 3 30 30 H 1.09002 * 109.47391 * 325.00111 * 3 2 1 31 31 H 1.09001 * 109.46813 * 205.00167 * 3 2 1 32 32 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.63004 * 248.51935 * 16 15 12 34 34 H 1.09004 * 109.63267 * 9.10028 * 16 15 12 35 35 H 1.09007 * 109.64613 * 294.07652 * 17 16 15 36 36 H 1.09001 * 109.42158 * 173.95090 * 17 16 15 37 37 H 1.09001 * 109.54270 * 179.30337 * 19 18 17 38 38 H 1.08993 * 109.52606 * 303.06032 * 20 19 18 39 39 H 1.09001 * 109.52291 * 63.24266 * 20 19 18 40 40 H 1.09004 * 109.40503 * 297.49697 * 21 20 19 41 41 H 1.08999 * 109.49330 * 177.51170 * 21 20 19 42 42 H 1.09003 * 109.48046 * 301.17430 * 23 22 21 43 43 H 1.09003 * 109.49092 * 181.15172 * 23 22 21 44 44 H 1.08995 * 109.52266 * 182.48566 * 24 23 22 45 45 H 1.08998 * 109.56913 * 62.32568 * 24 23 22 46 46 H 1.08999 * 109.49134 * 303.14872 * 25 18 17 47 47 H 1.08996 * 109.49410 * 183.06542 * 25 18 17 48 48 H 1.09001 * 109.62774 * 350.89792 * 26 15 12 49 49 H 1.09002 * 109.62856 * 111.47888 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5034 3.6468 0.6707 8 14 3.1797 3.5658 3.4210 9 1 4.4348 3.0312 4.0075 10 1 3.2256 5.0502 3.4226 11 1 2.0211 3.1056 4.2277 12 16 2.2929 -1.4341 -0.0006 13 8 1.4112 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8594 1.5809 16 6 3.7458 -1.4272 2.3003 17 6 3.3119 -0.7754 3.6229 18 7 2.4493 -1.7068 4.3619 19 6 2.1543 -1.1963 5.7074 20 6 1.4573 0.1634 5.5981 21 6 1.2268 0.7244 7.0039 22 8 2.4775 0.8258 7.6875 23 6 3.1507 -0.4228 7.8611 24 6 3.4605 -1.0288 6.4897 25 6 1.2116 -1.9879 3.6224 26 6 1.5566 -2.6843 2.3017 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6502 2.0043 -0.5894 31 1 3.1858 1.1176 -0.4343 32 1 3.9669 4.4805 0.8473 33 1 4.3790 -2.2906 2.5047 34 1 4.2927 -0.7034 1.6960 35 1 2.7623 0.1430 3.4159 36 1 4.1942 -0.5449 4.2200 37 1 1.5041 -1.8984 6.2294 38 1 2.0859 0.8504 5.0316 39 1 0.4999 0.0423 5.0912 40 1 0.5640 0.0577 7.5556 41 1 0.7710 1.7118 6.9312 42 1 2.5130 -1.1043 8.4241 43 1 4.0809 -0.2618 8.4059 44 1 3.9343 -2.0016 6.6201 45 1 4.1312 -0.3674 5.9414 46 1 0.6913 -1.0527 3.4153 47 1 0.5706 -2.6368 4.2192 48 1 0.6553 -2.7921 1.6982 49 1 1.9833 -3.6663 2.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408302508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:10 Heat of formation + Delta-G solvation = -104.659366 kcal Electronic energy + Delta-G solvation = -32285.075187 eV Core-core repulsion = 28181.300893 eV Total energy + Delta-G solvation = -4103.774294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.05973 -38.08550 -36.72452 -35.50372 -35.23926 -35.00617 -32.54709 -31.54967 -31.06548 -30.76815 -27.82548 -26.40871 -25.11547 -24.10054 -23.35021 -23.32484 -22.35704 -20.86996 -19.43098 -18.21743 -17.41330 -16.83583 -16.49061 -16.33852 -16.12566 -15.83013 -15.30704 -14.94047 -14.77592 -14.56928 -14.36156 -14.29058 -13.89668 -13.55020 -13.39238 -13.29400 -13.20681 -12.40711 -12.24750 -12.22251 -12.06187 -12.05774 -11.76355 -11.61273 -11.56831 -11.36510 -11.18975 -11.17138 -11.07811 -10.96001 -10.75330 -10.72277 -10.59886 -10.44486 -10.26548 -10.02464 -9.79288 -9.65207 -8.81687 -8.54842 -8.12642 -7.96043 -6.16717 -4.23490 1.23543 3.19344 3.26305 3.29344 3.43443 3.78776 3.92871 4.12971 4.29688 4.65668 4.72599 4.87628 4.90967 4.94313 5.09048 5.11037 5.17396 5.23186 5.32182 5.38109 5.40418 5.48867 5.55597 5.60012 5.62955 5.68428 5.71635 5.80725 5.87404 5.97879 5.98907 6.02408 6.04038 6.16543 6.22960 6.26040 6.42123 6.49135 6.51601 6.89208 7.12218 7.17476 7.19277 7.30820 7.40361 7.60353 7.80650 8.10401 8.80906 9.42181 10.91173 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.005837 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.494323 B = 4796.138178 C = 6500.149455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.997 5.997 3 C 0.244 3.756 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.271 1.271 12 S 2.786 3.214 13 O -1.000 7.000 14 O -0.976 6.976 15 N -1.005 6.005 16 C 0.139 3.861 17 C 0.025 3.975 18 N -0.527 5.527 19 C 0.088 3.912 20 C -0.196 4.196 21 C 0.068 3.932 22 O -0.384 6.384 23 C 0.063 3.937 24 C -0.152 4.152 25 C 0.040 3.960 26 C 0.132 3.868 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -10.080 11.203 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.711 3.289 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.196 1.196 12 S 2.795 3.205 13 O -0.984 6.984 14 O -0.960 6.960 15 N -0.844 5.844 16 C 0.013 3.987 17 C -0.103 4.103 18 N -0.251 5.251 19 C -0.021 4.021 20 C -0.235 4.235 21 C -0.010 4.010 22 O -0.302 6.302 23 C -0.014 4.014 24 C -0.189 4.189 25 C -0.089 4.089 26 C 0.006 3.994 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.927 -10.668 10.449 15.440 hybrid contribution -0.624 1.331 1.164 1.875 sum -4.551 -9.337 11.613 15.580 Atomic orbital electron populations 1.21193 0.80267 1.01829 1.00577 1.57685 1.14104 1.23556 1.88595 1.19214 0.92159 0.78901 0.97526 1.21551 1.36617 1.06722 0.92821 0.91774 1.24919 0.95279 0.96518 0.96897 1.69925 1.36593 1.15176 1.30806 0.86762 0.78907 0.78410 0.84846 1.20193 1.21182 1.19604 1.01785 0.73116 0.72655 0.72960 1.93525 1.67438 1.60416 1.76986 1.93571 1.40761 1.85248 1.76448 1.58264 1.29451 1.64933 1.31751 1.21453 0.85651 0.99115 0.92489 1.22858 0.97751 0.95287 0.94428 1.62153 1.15990 1.45057 1.01861 1.21708 0.96122 0.93873 0.90398 1.22980 1.02619 0.99331 0.98614 1.22489 0.85490 1.01609 0.91384 1.87949 1.34659 1.30287 1.77350 1.22568 0.97174 0.85775 0.95923 1.22320 0.97944 1.02280 0.96399 1.22451 0.91592 0.99943 0.94920 1.21354 0.91816 0.94037 0.92189 0.93776 0.93153 0.90949 0.94525 0.93166 0.92547 0.91613 0.88267 0.91062 0.90118 0.90214 0.89885 0.90639 0.93406 0.89077 0.93361 0.88876 0.90091 0.90442 0.93628 0.90414 0.89704 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 10.31 59.85 0.62 2.44 16 2 N -1.00 -20.25 3.23 -123.05 -0.40 -20.64 16 3 C 0.24 5.90 5.41 -5.19 -0.03 5.87 16 4 C -0.54 -13.29 9.16 -34.44 -0.32 -13.61 16 5 H 0.06 1.51 5.65 -52.49 -0.30 1.22 16 6 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 8 Si 0.88 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -5.95 7.09 56.52 0.40 -5.55 16 12 S 2.79 55.40 6.07 -107.50 -0.65 54.75 16 13 O -1.00 -20.37 15.99 -57.17 -0.91 -21.28 16 14 O -0.98 -22.57 15.46 -57.17 -0.88 -23.45 16 15 N -1.01 -16.85 3.38 -112.97 -0.38 -17.23 16 16 C 0.14 2.30 6.56 -3.36 -0.02 2.28 16 17 C 0.03 0.40 4.78 -3.46 -0.02 0.38 16 18 N -0.53 -6.98 4.62 -225.83 -1.04 -8.02 16 19 C 0.09 1.04 2.31 -67.53 -0.16 0.89 16 20 C -0.20 -2.63 4.74 -26.58 -0.13 -2.76 16 21 C 0.07 0.83 6.84 37.21 0.25 1.08 16 22 O -0.38 -5.24 10.77 -35.23 -0.38 -5.62 16 23 C 0.06 0.66 6.84 37.21 0.25 0.92 16 24 C -0.15 -1.70 5.31 -26.59 -0.14 -1.85 16 25 C 0.04 0.51 5.14 -3.70 -0.02 0.49 16 26 C 0.13 1.81 6.53 -3.60 -0.02 1.78 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.87 7.21 -51.93 -0.37 1.50 16 35 H 0.07 1.32 4.19 -51.93 -0.22 1.10 16 36 H 0.08 1.21 5.91 -51.93 -0.31 0.91 16 37 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.08 1.40 6.39 -51.93 -0.33 1.06 16 39 H 0.08 0.98 6.87 -51.93 -0.36 0.62 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.01 6.12 -51.93 -0.32 0.69 16 46 H 0.05 0.64 6.90 -51.93 -0.36 0.28 16 47 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 48 H 0.08 1.11 7.22 -51.93 -0.37 0.73 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -30.75 379.95 -10.92 -41.67 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.89 Total: 3.43 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.18 Total: -0.43 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -1.09 Total: -69.91 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -2.18 Total: -50.36 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.65 Total: 54.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.75 -10.92 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408302508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.987 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds