Wall clock time and date at job start Wed Apr 1 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46509 * 119.99992 * 2 1 4 4 C 1.50703 * 109.46867 * 275.00236 * 3 2 1 5 5 H 1.07998 * 120.00073 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99552 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00548 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99793 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.47004 * 89.99453 * 8 6 4 10 10 H 1.48494 * 109.47294 * 209.99132 * 8 6 4 11 11 H 1.48499 * 109.47243 * 329.99940 * 8 6 4 12 12 S 1.65606 * 120.00370 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40178 * 156.45797 * 12 2 1 14 14 O 1.42102 * 106.39797 * 23.53893 * 12 2 1 15 15 N 1.65595 * 107.21597 * 270.00177 * 12 2 1 16 16 C 1.47080 * 120.88319 * 90.00049 * 15 12 2 17 17 C 1.53234 * 108.51919 * 231.20321 * 16 15 12 18 18 N 1.46902 * 109.34471 * 306.16779 * 17 16 15 19 19 C 1.46896 * 111.00159 * 187.25490 * 18 17 16 20 20 C 1.53008 * 109.46677 * 163.93472 * 19 18 17 21 21 H 1.09000 * 110.43326 * 53.28956 * 20 19 18 22 22 C 1.54809 * 110.48913 * 290.59648 * 20 19 18 23 23 C 1.55001 * 102.09082 * 220.44514 * 22 20 19 24 24 O 1.44382 * 103.48864 * 37.02412 * 23 22 20 25 25 C 1.43738 * 106.97507 * 319.93716 * 24 23 22 26 26 C 1.46894 * 111.26789 * 63.10394 * 18 17 16 27 27 C 1.47080 * 120.87901 * 270.01615 * 15 12 2 28 28 H 1.08997 * 109.47075 * 269.99977 * 1 2 3 29 29 H 1.09003 * 109.47206 * 30.00263 * 1 2 3 30 30 H 1.08997 * 109.47167 * 149.99901 * 1 2 3 31 31 H 1.08996 * 109.46614 * 34.99844 * 3 2 1 32 32 H 1.08998 * 109.47360 * 155.00068 * 3 2 1 33 33 H 0.97000 * 120.00431 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.62761 * 111.49377 * 16 15 12 35 35 H 1.08997 * 109.62709 * 350.91216 * 16 15 12 36 36 H 1.09001 * 109.49244 * 186.20648 * 17 16 15 37 37 H 1.08999 * 109.51618 * 66.14399 * 17 16 15 38 38 H 1.08997 * 109.47140 * 43.94110 * 19 18 17 39 39 H 1.08994 * 109.47344 * 283.93342 * 19 18 17 40 40 H 1.08992 * 110.90744 * 338.64247 * 22 20 19 41 41 H 1.09002 * 110.90479 * 102.25056 * 22 20 19 42 42 H 1.09002 * 110.61371 * 278.52320 * 23 22 20 43 43 H 1.08997 * 110.75287 * 155.59273 * 23 22 20 44 44 H 1.08997 * 109.88250 * 267.08850 * 25 24 23 45 45 H 1.09006 * 109.99820 * 146.01094 * 25 24 23 46 46 H 1.08995 * 109.49408 * 56.85552 * 26 18 17 47 47 H 1.08992 * 109.49807 * 176.93892 * 26 18 17 48 48 H 1.09000 * 109.63046 * 248.50557 * 27 15 12 49 49 H 1.08996 * 109.63377 * 8.89619 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 3.0006 2.9504 -1.6664 7 7 3.5034 3.6470 -0.6707 8 14 3.1795 3.5661 -3.4210 9 1 2.0191 4.4270 -3.7643 10 1 4.4329 4.3527 -3.5442 11 1 3.2285 2.4081 -4.3494 12 16 2.2931 -1.4341 0.0006 13 8 3.5759 -1.1569 -0.5439 14 8 1.4114 -2.4067 -0.5434 15 7 2.5381 -1.8579 1.5826 16 6 1.5567 -2.6823 2.3040 17 6 1.2114 -1.9845 3.6238 18 7 2.4488 -1.7023 4.3634 19 6 2.1533 -1.1903 5.7082 20 6 3.4088 -1.2859 6.5775 21 1 4.2501 -0.7972 6.0860 22 6 3.7428 -2.7657 6.8862 23 6 4.1733 -2.6979 8.3737 24 8 3.2855 -1.7081 8.9364 25 6 3.1550 -0.6593 7.9623 26 6 3.3113 -0.7715 3.6235 27 6 3.7428 -1.4195 2.3036 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6501 2.0043 0.5894 32 1 3.1858 1.1178 0.4343 33 1 3.9668 4.4806 -0.8473 34 1 1.9837 -3.6639 2.5096 35 1 0.6556 -2.7909 1.7005 36 1 0.5704 -2.6329 4.2212 37 1 0.6906 -1.0498 3.4161 38 1 1.3557 -1.7834 6.1556 39 1 1.8374 -0.1494 5.6394 40 1 2.8625 -3.3967 6.7644 41 1 4.5623 -3.1183 6.2598 42 1 5.2110 -2.3754 8.4585 43 1 4.0313 -3.6624 8.8611 44 1 3.8910 0.1209 8.1566 45 1 2.1502 -0.2383 8.0001 46 1 2.7616 0.1464 3.4153 47 1 4.1934 -0.5401 4.2205 48 1 4.3799 -2.2798 2.5091 49 1 4.2888 -0.6959 1.6984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408382813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:17 Heat of formation + Delta-G solvation = -130.969466 kcal Electronic energy + Delta-G solvation = -30507.250722 eV Core-core repulsion = 26402.335537 eV Total energy + Delta-G solvation = -4104.915185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.67339 -39.54249 -38.37193 -37.22984 -36.87256 -36.04379 -34.52243 -33.08035 -32.13033 -30.44816 -29.68408 -28.02801 -26.80201 -24.88555 -24.79782 -24.17804 -23.36710 -21.72998 -21.06090 -19.79287 -19.06340 -18.47619 -18.27754 -17.51050 -17.32177 -16.96024 -16.56746 -16.09216 -15.90998 -15.90077 -15.78139 -15.40580 -15.30550 -15.09214 -14.95536 -14.25691 -14.06544 -13.93280 -13.79288 -13.65755 -13.43747 -13.35985 -13.10010 -13.07007 -12.95164 -12.83827 -12.50348 -12.44384 -12.36486 -12.28827 -12.15195 -12.10653 -12.01860 -11.85252 -11.78444 -11.70265 -11.35654 -10.61849 -10.57071 -10.15944 -9.78423 -9.27046 -8.22618 -6.34400 -0.38786 1.36992 1.39373 1.49865 1.98749 2.37686 2.54129 2.81417 3.08178 3.11539 3.34021 3.65647 3.73421 3.76342 4.05093 4.07488 4.09061 4.21617 4.28338 4.32516 4.34656 4.40808 4.44624 4.54421 4.66050 4.69868 4.71523 4.74945 4.77866 4.81736 4.89187 4.91436 4.95377 5.00696 5.02506 5.06120 5.11474 5.16008 5.23679 5.33495 5.41118 5.57726 5.68777 5.93639 5.96721 6.04296 6.08595 6.10649 6.73399 7.34558 8.84664 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002977 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.188020 B = 9403.710240 C =10398.321381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.005 6.005 3 C 0.278 3.722 4 C -0.550 4.550 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.276 1.276 12 S 2.792 3.208 13 O -1.007 7.007 14 O -1.006 7.006 15 N -1.005 6.005 16 C 0.123 3.877 17 C 0.045 3.955 18 N -0.529 5.529 19 C 0.068 3.932 20 C -0.116 4.116 21 H 0.084 0.916 22 C -0.128 4.128 23 C 0.038 3.962 24 O -0.404 6.404 25 C 0.049 3.951 26 C 0.047 3.953 27 C 0.126 3.874 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.026 0.974 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -12.079 17.905 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.846 5.846 3 C 0.154 3.846 4 C -0.590 4.590 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.201 1.201 12 S 2.801 3.199 13 O -0.991 6.991 14 O -0.990 6.990 15 N -0.847 5.847 16 C -0.002 4.002 17 C -0.084 4.084 18 N -0.254 5.254 19 C -0.060 4.060 20 C -0.135 4.135 21 H 0.103 0.897 22 C -0.165 4.165 23 C -0.038 4.038 24 O -0.324 6.324 25 C -0.028 4.028 26 C -0.082 4.082 27 C 0.000 4.000 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.044 0.956 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.662 -12.851 17.415 21.806 hybrid contribution -0.106 1.789 -1.118 2.112 sum -2.769 -11.062 16.296 19.890 Atomic orbital electron populations 1.21521 0.78234 1.03479 1.02170 1.57605 1.15675 1.22100 1.89216 1.18534 0.90196 0.80153 0.95697 1.21817 1.36320 1.06676 0.94164 0.93274 1.25705 0.94742 0.96722 1.01351 1.69991 1.37767 1.15680 1.32677 0.85618 0.78199 0.78299 0.79986 1.19065 1.20219 1.20075 1.01444 0.72336 0.72404 0.73676 1.93554 1.42694 1.85473 1.77374 1.93486 1.67469 1.60345 1.77676 1.58192 1.30515 1.65166 1.30840 1.21692 0.91424 0.94502 0.92555 1.22506 0.91334 0.99992 0.94593 1.61867 1.16376 1.44713 1.02443 1.22168 0.97178 0.98536 0.88070 1.22525 0.98638 0.97201 0.95121 0.89734 1.22981 1.02640 0.95539 0.95367 1.23762 0.93705 0.92686 0.93608 1.88836 1.67870 1.33963 1.41726 1.23245 1.02412 0.90354 0.86793 1.22423 0.98457 0.93083 0.94251 1.21541 0.85832 1.00081 0.92501 0.91275 0.91265 0.90691 0.95807 0.96612 0.92329 0.89179 0.89038 0.87060 0.94911 0.89398 0.94695 0.90367 0.89710 0.91838 0.88122 0.91977 0.89435 0.95613 0.88068 0.89042 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.02 10.68 127.77 1.36 4.39 16 2 N -1.00 -41.44 3.23 -543.22 -1.75 -43.19 16 3 C 0.28 14.00 5.08 85.63 0.43 14.43 16 4 C -0.55 -31.25 9.38 25.60 0.24 -31.01 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.82 5.46 84.65 0.46 1.29 16 7 N -0.92 -53.49 13.29 21.45 0.28 -53.20 16 8 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 S 2.79 111.09 6.07 -56.49 -0.34 110.75 16 13 O -1.01 -49.18 15.89 -128.00 -2.03 -51.22 16 14 O -1.01 -40.90 15.52 -128.00 -1.99 -42.89 16 15 N -1.01 -29.66 3.39 -512.17 -1.73 -31.40 16 16 C 0.12 2.70 6.53 86.35 0.56 3.26 16 17 C 0.05 0.81 5.60 86.38 0.48 1.29 16 18 N -0.53 -9.62 4.46 -895.28 -3.99 -13.61 16 19 C 0.07 1.03 4.09 86.31 0.35 1.38 16 20 C -0.12 -1.64 3.08 -9.80 -0.03 -1.67 16 21 H 0.08 1.24 6.49 -2.39 -0.02 1.22 16 22 C -0.13 -1.67 6.58 31.90 0.21 -1.46 16 23 C 0.04 0.52 7.72 72.67 0.56 1.09 16 24 O -0.40 -7.63 11.52 -148.98 -1.72 -9.35 16 25 C 0.05 0.75 7.37 72.35 0.53 1.28 16 26 C 0.05 1.06 5.47 86.39 0.47 1.54 16 27 C 0.13 3.43 6.53 86.35 0.56 4.00 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 30 H 0.07 2.32 7.02 -2.39 -0.02 2.31 16 31 H 0.02 1.23 8.11 -2.39 -0.02 1.21 16 32 H 0.02 0.85 7.61 -2.39 -0.02 0.84 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.97 7.22 -2.39 -0.02 1.96 16 36 H 0.11 1.41 7.93 -2.39 -0.02 1.39 16 37 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 1.18 7.72 -2.39 -0.02 1.16 16 39 H 0.03 0.58 8.05 -2.39 -0.02 0.56 16 40 H 0.08 1.05 7.78 -2.39 -0.02 1.03 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.23 7.69 -2.38 -0.02 1.21 16 46 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 1.92 6.39 -2.39 -0.02 1.91 16 48 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.07 2.30 7.21 -2.39 -0.02 2.28 16 Total: -1.00 -71.88 394.47 -4.11 -75.99 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.92 Total: 11.69 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.21 Total: -0.21 kcal Atomic # 7 Polarization: -134.21 SS G_CDS: -7.19 Total: -141.40 kcal Atomic # 8 Polarization: -97.72 SS G_CDS: -5.74 Total: -103.46 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 111.09 SS G_CDS: -0.34 Total: 110.75 kcal Total: -71.88 -4.11 -75.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408382813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.981 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds