Wall clock time and date at job start Wed Apr 1 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47230 * 60.00308 * 9 7 5 11 11 H 1.48505 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47297 * 300.00046 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 N 1.46904 * 109.47192 * 180.28082 * 15 13 3 17 17 C 1.46901 * 110.99414 * 293.95159 * 16 15 13 18 18 C 1.46895 * 110.99932 * 170.00207 * 16 15 13 19 19 H 1.09001 * 110.64740 * 59.29850 * 18 16 15 20 20 C 1.55156 * 110.71995 * 296.15144 * 18 16 15 21 21 C 1.54915 * 101.58322 * 206.13798 * 20 18 16 22 22 N 1.47420 * 104.82909 * 37.01212 * 21 20 18 23 23 S 1.65605 * 125.64822 * 155.90899 * 22 21 20 24 24 C 1.81398 * 104.45257 * 89.96985 * 23 22 21 25 25 O 1.42102 * 104.27729 * 206.04674 * 23 22 21 26 26 O 1.42107 * 104.27505 * 333.89620 * 23 22 21 27 27 C 1.47320 * 108.74198 * 335.71302 * 22 21 20 28 28 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 29 29 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 30 30 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 32 32 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 33 33 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 34 34 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 35 35 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 37 37 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 38 38 H 1.09002 * 109.47259 * 60.00431 * 17 16 15 39 39 H 1.09002 * 109.47005 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47311 * 299.99546 * 17 16 15 41 41 H 1.09005 * 111.00583 * 324.20959 * 20 18 16 42 42 H 1.08994 * 111.00476 * 88.06044 * 20 18 16 43 43 H 1.09003 * 110.36574 * 155.84774 * 21 20 18 44 44 H 1.08995 * 110.36750 * 278.05776 * 21 20 18 45 45 H 1.09005 * 109.46882 * 59.99781 * 24 23 22 46 46 H 1.08992 * 109.47053 * 180.02562 * 24 23 22 47 47 H 1.08998 * 109.46895 * 300.00566 * 24 23 22 48 48 H 1.08999 * 110.06871 * 241.87952 * 27 22 21 49 49 H 1.08996 * 109.85305 * 120.60964 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.1420 0.6399 -3.5934 11 1 6.1609 2.7955 -4.7034 12 1 6.8408 2.6209 -2.3819 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 7 2.2989 2.2102 3.5888 17 6 3.7355 2.5140 3.6332 18 6 1.8404 1.6463 4.8654 19 1 2.3145 0.6827 5.0523 20 6 0.2949 1.5101 4.8819 21 6 -0.0078 1.5852 6.3993 22 7 0.9542 2.5694 6.9277 23 16 0.7617 3.4613 8.3097 24 6 1.4954 2.4374 9.6151 25 8 1.5468 4.6249 8.0881 26 8 -0.6467 3.5488 8.4770 27 6 2.1177 2.6254 6.0257 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0957 3.1410 -1.1384 35 1 3.6753 3.5162 -4.4439 36 1 0.9376 1.0142 2.5258 37 1 2.6158 0.4209 2.5344 38 1 4.0342 2.9945 2.7015 39 1 3.9397 3.1830 4.4692 40 1 4.2985 1.5896 3.7621 41 1 -0.1758 2.3358 4.3483 42 1 -0.0172 0.5512 4.4682 43 1 -1.0296 1.9263 6.5658 44 1 0.1473 0.6124 6.8657 45 1 2.5467 2.2589 9.3891 46 1 1.4115 2.9532 10.5716 47 1 0.9686 1.4848 9.6688 48 1 3.0190 2.3227 6.5587 49 1 2.2364 3.6367 5.6370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428783237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:09 Heat of formation + Delta-G solvation = -111.377185 kcal Electronic energy + Delta-G solvation = -29701.661144 eV Core-core repulsion = 25597.595544 eV Total energy + Delta-G solvation = -4104.065600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.98510 -39.72384 -38.19574 -37.14054 -37.00953 -36.38982 -34.87840 -31.63482 -31.33789 -30.58530 -30.23410 -29.15332 -28.14213 -25.81617 -24.52609 -23.76364 -23.09385 -21.18267 -19.95300 -19.73769 -18.77320 -18.59337 -17.92241 -17.78822 -17.26526 -17.00811 -16.67252 -16.25431 -16.18567 -15.47271 -15.20041 -15.01959 -14.74861 -14.60426 -14.36074 -14.33289 -14.02817 -13.92851 -13.72415 -13.67434 -13.53947 -13.28944 -13.22081 -13.13836 -13.10234 -12.96044 -12.76309 -12.62276 -12.55835 -12.46289 -12.16793 -12.11627 -11.97332 -11.83266 -11.78162 -11.74857 -11.68594 -10.63038 -10.44619 -9.90926 -9.36764 -9.19892 -8.20407 -6.35575 -0.73496 1.36280 1.40882 1.48033 1.64025 1.93858 2.26498 2.42635 2.94584 3.01171 3.08679 3.12718 3.52870 3.69721 3.81110 4.06577 4.12845 4.16641 4.20917 4.29360 4.36250 4.43261 4.47664 4.49861 4.56772 4.60705 4.68140 4.74484 4.89422 4.91240 4.94693 4.98808 4.99464 5.03615 5.09422 5.16570 5.23127 5.25436 5.28796 5.44159 5.49239 5.60948 5.88543 5.96835 6.09369 6.22359 6.73227 6.89931 7.31241 7.61147 8.86213 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.002312 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.561812 B =12108.799349 C =12812.118638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.582 6.582 15 C 0.055 3.945 16 N -0.541 5.541 17 C 0.021 3.979 18 C 0.076 3.924 19 H 0.090 0.910 20 C -0.126 4.126 21 C 0.116 3.884 22 N -1.017 6.017 23 S 2.625 3.375 24 C -0.643 4.643 25 O -1.002 7.002 26 O -0.994 6.994 27 C 0.125 3.875 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.019 0.981 34 H -0.009 1.009 35 H 0.266 0.734 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.093 0.907 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 -14.014 27.116 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.282 3.718 14 O -0.461 6.461 15 C -0.076 4.076 16 N -0.266 5.266 17 C -0.127 4.127 18 C -0.033 4.033 19 H 0.108 0.892 20 C -0.165 4.165 21 C -0.009 4.009 22 N -0.855 5.855 23 S 2.724 3.276 24 C -0.797 4.797 25 O -0.993 6.993 26 O -0.984 6.984 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.037 0.963 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.130 0.870 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.172 0.828 48 H 0.111 0.889 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.004 -11.969 26.984 30.124 hybrid contribution 1.575 -0.398 -0.800 1.810 sum -4.429 -12.367 26.184 29.295 Atomic orbital electron populations 1.22161 0.94624 1.03502 1.01634 1.21743 0.95278 0.81307 1.03875 1.48298 1.64357 1.15144 1.06118 1.18629 0.95160 0.91327 0.80608 1.21674 0.97862 1.31849 1.06349 0.92788 1.25887 1.02400 0.94556 0.96540 1.70057 1.37863 1.34284 1.14823 0.85474 0.79037 0.79049 0.77280 1.18290 1.20565 1.20316 1.21287 0.77377 0.86702 0.86412 1.90624 1.47203 1.20564 1.87743 1.21989 1.04579 0.93821 0.87180 1.61572 1.17659 1.44830 1.02531 1.22461 0.86795 1.00513 1.02895 1.22797 0.96858 0.96589 0.87079 0.89237 1.22932 0.93665 1.03851 0.96026 1.22213 0.92567 0.92557 0.93557 1.58463 1.29183 1.58405 1.39472 1.04207 0.73649 0.74485 0.75262 1.30310 1.15248 1.16934 1.17236 1.93564 1.72920 1.47810 1.84984 1.93550 1.31637 1.86798 1.86455 1.21789 0.87949 0.99991 0.90381 0.91912 0.94745 0.88459 0.91266 0.87926 0.96321 0.99045 0.92502 0.85527 0.89682 0.93263 0.90398 0.94070 0.92060 0.86979 0.90371 0.87604 0.83429 0.83759 0.82770 0.88912 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.86 5.93 86.38 0.51 3.37 16 3 N -0.61 -25.26 2.46 -826.15 -2.03 -27.29 16 4 C 0.26 14.43 5.16 85.64 0.44 14.88 16 5 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.49 20.16 7.40 87.66 0.65 20.81 16 14 O -0.58 -30.46 13.89 -3.04 -0.04 -30.51 16 15 C 0.05 1.42 3.89 85.56 0.33 1.75 16 16 N -0.54 -14.21 4.33 -894.59 -3.87 -18.09 16 17 C 0.02 0.59 8.97 127.69 1.14 1.74 16 18 C 0.08 1.25 2.64 46.11 0.12 1.37 16 19 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 20 C -0.13 -1.76 5.54 31.99 0.18 -1.59 16 21 C 0.12 1.31 7.07 86.86 0.61 1.92 16 22 N -1.02 -15.35 3.63 -505.70 -1.83 -17.19 16 23 S 2.62 42.18 6.29 -56.49 -0.36 41.83 16 24 C -0.64 -2.64 10.99 113.37 1.25 -1.39 16 25 O -1.00 -25.83 17.61 -127.65 -2.25 -28.07 16 26 O -0.99 -22.85 17.28 -127.65 -2.21 -25.06 16 27 C 0.12 2.17 5.40 86.68 0.47 2.63 16 28 H 0.06 1.30 7.20 -2.39 -0.02 1.28 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.10 2.09 6.45 -2.39 -0.02 2.08 16 33 H 0.02 1.04 8.07 -2.39 -0.02 1.03 16 34 H -0.01 -0.55 7.42 -2.39 -0.02 -0.57 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.13 2.52 5.83 -2.38 -0.01 2.51 16 37 H 0.09 1.75 7.39 -2.39 -0.02 1.73 16 38 H 0.05 1.89 5.88 -2.39 -0.01 1.87 16 39 H 0.08 1.92 6.67 -2.39 -0.02 1.91 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.11 0.90 7.88 -2.39 -0.02 0.88 16 43 H 0.08 1.03 7.67 -2.39 -0.02 1.01 16 44 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 1.30 7.49 -2.39 -0.02 1.29 16 Total: -1.00 -92.25 401.22 -2.20 -94.45 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.93 Total: 7.35 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 7.15 Total: 12.36 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -7.45 Total: -119.52 kcal Atomic # 8 Polarization: -79.14 SS G_CDS: -4.50 Total: -83.64 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 42.18 SS G_CDS: -0.36 Total: 41.83 kcal Total: -92.25 -2.20 -94.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428783237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.926 kcal (2) G-P(sol) polarization free energy of solvation -92.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds