Wall clock time and date at job start Wed Apr 1 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81399 * 109.46841 * 2 1 4 4 O 1.42098 * 110.54332 * 68.37653 * 3 2 1 5 5 O 1.42098 * 110.54539 * 291.62622 * 3 2 1 6 6 N 1.65603 * 104.44980 * 180.02562 * 3 2 1 7 7 C 1.46503 * 119.99943 * 270.00295 * 6 3 2 8 8 C 1.46498 * 120.00112 * 90.00109 * 6 3 2 9 9 C 1.53001 * 109.47359 * 95.00239 * 8 6 3 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.46570 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99287 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00583 * 5.05598 * 12 11 10 14 14 N 1.34779 * 119.99490 * 185.04752 * 12 11 10 15 15 C 1.46506 * 119.99939 * 175.18512 * 14 12 11 16 16 C 1.53000 * 109.47160 * 185.07825 * 15 14 12 17 17 C 1.50699 * 115.54936 * 64.84254 * 16 15 14 18 18 H 1.07998 * 120.00225 * 266.80144 * 17 16 15 19 19 C 1.37876 * 119.99634 * 86.79934 * 17 16 15 20 20 N 1.31520 * 119.99552 * 178.76525 * 19 17 16 21 21 Si 1.86804 * 120.00281 * 358.77370 * 19 17 16 22 22 H 1.48494 * 109.47406 * 91.37328 * 21 19 17 23 23 H 1.48503 * 109.46840 * 211.37394 * 21 19 17 24 24 H 1.48494 * 109.46821 * 331.36891 * 21 19 17 25 25 C 1.52996 * 117.49758 * 279.17155 * 16 15 14 26 26 C 1.52998 * 117.49695 * 210.51452 * 16 15 14 27 27 H 1.08996 * 109.46791 * 299.99802 * 1 2 3 28 28 H 1.09000 * 109.46874 * 59.99920 * 1 2 3 29 29 H 1.09003 * 109.46520 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47277 * 240.00547 * 2 1 3 31 31 H 1.08996 * 109.47589 * 120.00151 * 2 1 3 32 32 H 1.09004 * 109.46922 * 269.99596 * 7 6 3 33 33 H 1.09002 * 109.47218 * 29.99383 * 7 6 3 34 34 H 1.09001 * 109.47173 * 149.99874 * 7 6 3 35 35 H 1.08998 * 109.47204 * 334.99679 * 8 6 3 36 36 H 1.09003 * 109.46890 * 215.00387 * 8 6 3 37 37 H 1.08998 * 109.46665 * 60.00112 * 9 8 6 38 38 H 1.08997 * 109.46558 * 299.99866 * 9 8 6 39 39 H 1.08996 * 109.46976 * 60.00116 * 10 9 8 40 40 H 1.09000 * 109.46797 * 299.99523 * 10 9 8 41 41 H 0.96996 * 120.00033 * 359.97438 * 11 10 9 42 42 H 0.96999 * 120.00377 * 354.92014 * 14 12 11 43 43 H 1.08998 * 109.46889 * 305.07936 * 15 14 12 44 44 H 1.09002 * 109.46788 * 65.07769 * 15 14 12 45 45 H 0.97005 * 119.99719 * 180.02562 * 20 19 17 46 46 H 1.09004 * 117.50109 * 0.02562 * 25 16 15 47 47 H 1.08996 * 117.49781 * 145.02314 * 25 16 15 48 48 H 1.09002 * 117.49646 * 214.98153 * 26 16 15 49 49 H 1.09004 * 117.49998 * 359.97122 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5654 -0.0007 7 6 4.5145 1.5011 1.2677 8 6 4.5135 1.5015 -1.2697 9 6 5.0016 2.9012 -1.6485 10 6 5.7626 2.8346 -2.9742 11 7 6.2294 4.1750 -3.3371 12 6 6.9288 4.3599 -4.4743 13 8 7.0936 3.4334 -5.2442 14 7 7.4455 5.5719 -4.7580 15 6 8.2938 5.7483 -5.9393 16 6 8.8480 7.1743 -5.9609 17 6 9.7812 7.5261 -4.8311 18 1 9.3944 7.9904 -3.9360 19 6 11.1286 7.2552 -4.9403 20 7 11.9466 7.5844 -3.9644 21 14 11.7925 6.4210 -6.4742 22 1 12.2030 7.4525 -7.4604 23 1 12.9661 5.5852 -6.1145 24 1 10.7361 5.5620 -7.0669 25 6 7.9332 8.2797 -6.4919 26 6 9.1242 7.8041 -7.3276 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.7856 2.5089 1.5824 33 1 3.8830 1.0407 2.0276 34 1 5.4183 0.9059 1.1369 35 1 3.8527 1.1237 -2.0499 36 1 5.3691 0.8346 -1.1639 37 1 5.6624 3.2790 -0.8684 38 1 4.1459 3.5681 -1.7543 39 1 5.1013 2.4570 -3.7541 40 1 6.6182 2.1676 -2.8688 41 1 6.0351 4.9292 -2.7591 42 1 7.2525 6.3283 -4.1822 43 1 9.1198 5.0380 -5.9027 44 1 7.7042 5.5739 -6.8393 45 1 12.8947 7.3941 -4.0413 46 1 6.9364 7.9911 -6.8255 47 1 8.0066 9.2615 -6.0244 48 1 9.9807 8.4733 -7.4095 49 1 8.9116 7.2025 -8.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430174373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:23 Heat of formation + Delta-G solvation = -77.633803 kcal Electronic energy + Delta-G solvation = -28352.407834 eV Core-core repulsion = 24249.805457 eV Total energy + Delta-G solvation = -4102.602378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.48949 -37.68378 -37.43583 -37.04004 -36.29816 -34.81730 -33.68587 -33.35263 -32.10771 -31.36657 -27.56804 -26.46379 -25.35144 -24.65848 -23.97212 -21.90615 -21.69824 -20.34624 -19.29979 -19.18575 -18.15315 -17.70025 -16.99277 -16.80672 -16.47346 -15.82496 -15.62671 -15.24010 -14.99736 -14.66625 -14.53293 -14.35027 -14.02036 -13.79953 -13.71823 -13.36111 -13.18536 -13.04840 -12.89192 -12.70152 -12.59461 -12.45817 -12.38890 -12.17625 -12.12394 -12.09094 -11.88122 -11.56814 -11.14744 -11.12919 -10.94969 -10.73192 -10.49388 -10.15272 -9.82905 -9.61014 -9.47848 -9.15822 -8.85751 -8.61549 -8.56964 -8.09878 -6.13877 -4.17901 -0.22732 2.15704 3.15561 3.30621 3.40372 3.40612 3.47368 3.64770 3.75293 3.98312 4.21130 4.23713 4.42148 4.59705 4.62122 4.68421 4.84843 4.92052 4.99465 5.05779 5.11455 5.12855 5.16196 5.17768 5.24573 5.35344 5.41481 5.53731 5.63296 5.72769 5.95373 6.00157 6.05042 6.10226 6.11268 6.30860 6.44880 6.52540 6.72370 6.77259 7.03490 7.11175 7.23601 7.47500 7.70355 8.43254 8.59468 8.86235 9.14010 9.49487 10.97455 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.001857 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.245274 B =15074.639769 C =15412.903652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.634 4.634 3 S 2.605 3.395 4 O -0.953 6.953 5 O -0.946 6.946 6 N -1.003 6.003 7 C 0.092 3.908 8 C 0.128 3.872 9 C -0.154 4.154 10 C 0.144 3.856 11 N -0.752 5.752 12 C 0.701 3.299 13 O -0.605 6.605 14 N -0.720 5.720 15 C 0.175 3.825 16 C -0.017 4.017 17 C -0.487 4.487 18 H 0.077 0.923 19 C 0.078 3.922 20 N -0.897 5.897 21 Si 0.879 3.121 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.256 1.256 25 C -0.178 4.178 26 C -0.192 4.192 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.396 0.604 42 H 0.399 0.601 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.265 0.735 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.319 -16.425 10.483 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.763 4.763 3 S 2.697 3.303 4 O -0.943 6.943 5 O -0.936 6.936 6 N -0.841 5.841 7 C -0.053 4.053 8 C 0.003 3.997 9 C -0.194 4.194 10 C 0.019 3.981 11 N -0.409 5.409 12 C 0.401 3.599 13 O -0.485 6.485 14 N -0.373 5.373 15 C 0.051 3.949 16 C -0.018 4.018 17 C -0.524 4.524 18 H 0.095 0.905 19 C -0.124 4.124 20 N -0.533 5.533 21 Si 0.707 3.293 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.180 1.180 25 C -0.216 4.216 26 C -0.230 4.230 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.229 0.771 42 H 0.233 0.767 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.376 -16.507 9.856 28.015 hybrid contribution 0.637 -0.454 -0.178 0.802 sum -19.739 -16.961 9.678 27.767 Atomic orbital electron populations 1.21514 0.90449 1.05136 1.03591 1.30563 1.07305 1.26876 1.11558 1.05375 0.72972 0.77501 0.74457 1.93605 1.83125 1.72244 1.45322 1.93630 1.82972 1.72052 1.44944 1.57497 1.24717 1.89855 1.12021 1.21510 0.97549 1.02846 0.83376 1.21214 0.97554 0.97364 0.83610 1.22239 1.01347 0.98341 0.97440 1.20958 0.97958 0.84079 0.95127 1.45022 1.60731 1.10476 1.24695 1.15982 0.78674 0.83759 0.81485 1.90861 1.65735 1.42025 1.49903 1.44980 1.52692 1.09019 1.30577 1.21001 0.91815 0.97401 0.84653 1.19651 0.98882 0.89196 0.94108 1.20166 0.90563 1.40803 1.00857 0.90467 1.24974 0.96814 0.94453 0.96204 1.69892 1.04060 1.46919 1.32469 0.86851 0.78718 0.80131 0.83608 1.20460 1.22090 1.18005 1.22837 0.93239 1.00298 1.05200 1.22948 1.00275 1.04964 0.94833 0.90947 0.90793 0.89968 0.84995 0.85187 0.91950 0.91211 0.90655 0.89678 0.89648 0.90568 0.90170 0.91617 0.91801 0.77082 0.76712 0.91862 0.94208 0.92546 0.90848 0.89447 0.89175 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.92 37.16 0.37 -0.28 16 2 C -0.63 -2.63 6.90 37.16 0.26 -2.37 16 3 S 2.60 20.13 5.32 -107.50 -0.57 19.56 16 4 O -0.95 -10.28 17.09 -57.54 -0.98 -11.27 16 5 O -0.95 -10.44 16.74 -57.54 -0.96 -11.40 16 6 N -1.00 -6.54 3.12 -121.75 -0.38 -6.92 16 7 C 0.09 0.48 10.24 59.85 0.61 1.09 16 8 C 0.13 0.86 5.28 -4.04 -0.02 0.84 16 9 C -0.15 -1.38 5.65 -26.73 -0.15 -1.53 16 10 C 0.14 1.70 5.68 -4.04 -0.02 1.68 16 11 N -0.75 -10.75 5.56 -65.22 -0.36 -11.11 16 12 C 0.70 13.31 8.55 -86.92 -0.74 12.56 16 13 O -0.61 -13.64 16.36 5.29 0.09 -13.55 16 14 N -0.72 -13.83 5.46 -65.22 -0.36 -14.18 16 15 C 0.18 3.80 5.12 -4.04 -0.02 3.77 16 16 C -0.02 -0.38 0.81 -155.66 -0.13 -0.51 16 17 C -0.49 -12.85 9.29 -34.44 -0.32 -13.17 16 18 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 21 Si 0.88 21.61 24.88 -169.99 -4.23 17.38 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.26 -6.07 5.73 56.52 0.32 -5.75 16 25 C -0.18 -3.45 9.96 -26.70 -0.27 -3.72 16 26 C -0.19 -3.98 7.60 -26.70 -0.20 -4.18 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.27 7.79 -51.93 -0.40 -0.14 16 34 H 0.07 0.26 7.94 -51.93 -0.41 -0.15 16 35 H 0.08 0.50 7.61 -51.93 -0.39 0.11 16 36 H 0.09 0.41 7.96 -51.93 -0.41 0.00 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.40 4.71 8.49 -40.82 -0.35 4.37 16 42 H 0.40 6.99 8.47 -40.82 -0.35 6.65 16 43 H 0.06 1.52 6.65 -51.93 -0.35 1.18 16 44 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 48 H 0.09 1.95 7.27 -51.93 -0.38 1.57 16 49 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 411.17 15.07 6.20 6.20 Total: -1.00 -37.05 411.17 -10.10 -47.15 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.58 Total: 7.73 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.73 Total: -3.74 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.32 Total: -58.07 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.86 Total: -36.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.23 Total: 17.38 kcal Atomic # 16 Polarization: 20.13 SS G_CDS: -0.57 Total: 19.56 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.05 -10.10 -47.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430174373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.480 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds