Wall clock time and date at job start Wed Apr 1 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81399 * 109.46841 * 2 1 4 4 O 1.42098 * 110.54332 * 68.37653 * 3 2 1 5 5 O 1.42098 * 110.54539 * 291.62622 * 3 2 1 6 6 N 1.65603 * 104.44980 * 180.02562 * 3 2 1 7 7 C 1.46503 * 119.99943 * 270.00295 * 6 3 2 8 8 C 1.46498 * 120.00112 * 90.00109 * 6 3 2 9 9 C 1.53001 * 109.47359 * 95.00239 * 8 6 3 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.46570 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99287 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00583 * 5.05598 * 12 11 10 14 14 N 1.34779 * 119.99490 * 185.04752 * 12 11 10 15 15 C 1.46506 * 119.99939 * 175.18512 * 14 12 11 16 16 C 1.53000 * 109.47160 * 185.07825 * 15 14 12 17 17 C 1.50699 * 115.54936 * 64.84254 * 16 15 14 18 18 H 1.07998 * 120.00225 * 266.80144 * 17 16 15 19 19 C 1.37876 * 119.99634 * 86.79934 * 17 16 15 20 20 N 1.31520 * 119.99552 * 178.76525 * 19 17 16 21 21 Si 1.86804 * 120.00281 * 358.77370 * 19 17 16 22 22 H 1.48494 * 109.47406 * 91.37328 * 21 19 17 23 23 H 1.48503 * 109.46840 * 211.37394 * 21 19 17 24 24 H 1.48494 * 109.46821 * 331.36891 * 21 19 17 25 25 C 1.52996 * 117.49758 * 279.17155 * 16 15 14 26 26 C 1.52998 * 117.49695 * 210.51452 * 16 15 14 27 27 H 1.08996 * 109.46791 * 299.99802 * 1 2 3 28 28 H 1.09000 * 109.46874 * 59.99920 * 1 2 3 29 29 H 1.09003 * 109.46520 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47277 * 240.00547 * 2 1 3 31 31 H 1.08996 * 109.47589 * 120.00151 * 2 1 3 32 32 H 1.09004 * 109.46922 * 269.99596 * 7 6 3 33 33 H 1.09002 * 109.47218 * 29.99383 * 7 6 3 34 34 H 1.09001 * 109.47173 * 149.99874 * 7 6 3 35 35 H 1.08998 * 109.47204 * 334.99679 * 8 6 3 36 36 H 1.09003 * 109.46890 * 215.00387 * 8 6 3 37 37 H 1.08998 * 109.46665 * 60.00112 * 9 8 6 38 38 H 1.08997 * 109.46558 * 299.99866 * 9 8 6 39 39 H 1.08996 * 109.46976 * 60.00116 * 10 9 8 40 40 H 1.09000 * 109.46797 * 299.99523 * 10 9 8 41 41 H 0.96996 * 120.00033 * 359.97438 * 11 10 9 42 42 H 0.96999 * 120.00377 * 354.92014 * 14 12 11 43 43 H 1.08998 * 109.46889 * 305.07936 * 15 14 12 44 44 H 1.09002 * 109.46788 * 65.07769 * 15 14 12 45 45 H 0.97005 * 119.99719 * 180.02562 * 20 19 17 46 46 H 1.09004 * 117.50109 * 0.02562 * 25 16 15 47 47 H 1.08996 * 117.49781 * 145.02314 * 25 16 15 48 48 H 1.09002 * 117.49646 * 214.98153 * 26 16 15 49 49 H 1.09004 * 117.49998 * 359.97122 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5654 -0.0007 7 6 4.5145 1.5011 1.2677 8 6 4.5135 1.5015 -1.2697 9 6 5.0016 2.9012 -1.6485 10 6 5.7626 2.8346 -2.9742 11 7 6.2294 4.1750 -3.3371 12 6 6.9288 4.3599 -4.4743 13 8 7.0936 3.4334 -5.2442 14 7 7.4455 5.5719 -4.7580 15 6 8.2938 5.7483 -5.9393 16 6 8.8480 7.1743 -5.9609 17 6 9.7812 7.5261 -4.8311 18 1 9.3944 7.9904 -3.9360 19 6 11.1286 7.2552 -4.9403 20 7 11.9466 7.5844 -3.9644 21 14 11.7925 6.4210 -6.4742 22 1 12.2030 7.4525 -7.4604 23 1 12.9661 5.5852 -6.1145 24 1 10.7361 5.5620 -7.0669 25 6 7.9332 8.2797 -6.4919 26 6 9.1242 7.8041 -7.3276 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.7856 2.5089 1.5824 33 1 3.8830 1.0407 2.0276 34 1 5.4183 0.9059 1.1369 35 1 3.8527 1.1237 -2.0499 36 1 5.3691 0.8346 -1.1639 37 1 5.6624 3.2790 -0.8684 38 1 4.1459 3.5681 -1.7543 39 1 5.1013 2.4570 -3.7541 40 1 6.6182 2.1676 -2.8688 41 1 6.0351 4.9292 -2.7591 42 1 7.2525 6.3283 -4.1822 43 1 9.1198 5.0380 -5.9027 44 1 7.7042 5.5739 -6.8393 45 1 12.8947 7.3941 -4.0413 46 1 6.9364 7.9911 -6.8255 47 1 8.0066 9.2615 -6.0244 48 1 9.9807 8.4733 -7.4095 49 1 8.9116 7.2025 -8.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430174373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:22 Heat of formation + Delta-G solvation = -107.502033 kcal Electronic energy + Delta-G solvation = -28353.703018 eV Core-core repulsion = 24249.805457 eV Total energy + Delta-G solvation = -4103.897561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.96448 -38.88516 -38.30609 -37.97573 -36.99454 -35.90429 -34.96572 -34.19573 -34.02852 -32.27410 -28.65917 -27.81147 -26.86902 -25.43028 -24.56646 -23.33844 -22.69294 -21.77910 -21.06192 -19.82690 -19.20829 -18.70427 -18.33268 -17.57187 -17.40208 -17.07075 -16.94654 -16.61718 -15.99268 -15.72970 -15.54572 -15.23779 -15.11835 -14.86866 -14.80899 -14.68324 -14.32700 -14.10041 -13.93219 -13.72027 -13.41834 -13.37715 -13.27787 -13.15222 -13.07442 -12.85995 -12.72632 -12.60834 -12.41846 -12.28763 -12.17328 -11.96561 -11.76195 -11.59682 -11.49363 -11.34278 -10.97072 -10.64417 -10.37559 -10.23382 -10.01860 -9.59047 -8.28593 -6.34365 -0.76795 1.34815 1.40677 1.51555 1.60888 1.85251 2.25185 2.37926 2.88168 3.06366 3.11877 3.16034 3.53378 3.59029 3.79176 3.88937 3.98629 4.05992 4.15601 4.26126 4.35946 4.38179 4.43892 4.54190 4.57079 4.63013 4.67361 4.73585 4.75051 4.83232 4.85501 4.88581 4.94434 5.05032 5.09299 5.11259 5.20274 5.25143 5.32735 5.50319 5.55269 5.60300 5.67698 5.71962 6.12795 6.29975 6.73445 7.19557 7.35702 7.66251 8.86000 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.001857 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.245274 B =15074.639769 C =15412.903652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.608 4.608 3 S 2.599 3.401 4 O -0.993 6.993 5 O -0.989 6.989 6 N -1.002 6.002 7 C 0.084 3.916 8 C 0.125 3.875 9 C -0.146 4.146 10 C 0.142 3.858 11 N -0.739 5.739 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.720 5.720 15 C 0.185 3.815 16 C -0.042 4.042 17 C -0.474 4.474 18 H 0.044 0.956 19 C 0.023 3.977 20 N -0.945 5.945 21 Si 0.930 3.070 22 H -0.266 1.266 23 H -0.303 1.303 24 H -0.241 1.241 25 C -0.152 4.152 26 C -0.191 4.191 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.408 0.592 42 H 0.406 0.594 43 H 0.034 0.966 44 H 0.053 0.947 45 H 0.264 0.736 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.711 -18.358 9.791 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.741 4.741 3 S 2.696 3.304 4 O -0.984 6.984 5 O -0.979 6.979 6 N -0.839 5.839 7 C -0.061 4.061 8 C -0.001 4.001 9 C -0.186 4.186 10 C 0.018 3.982 11 N -0.396 5.396 12 C 0.397 3.603 13 O -0.525 6.525 14 N -0.373 5.373 15 C 0.060 3.940 16 C -0.043 4.043 17 C -0.511 4.511 18 H 0.063 0.937 19 C -0.174 4.174 20 N -0.585 5.585 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.230 1.230 24 H -0.165 1.165 25 C -0.189 4.189 26 C -0.228 4.228 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.243 0.757 42 H 0.241 0.759 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.104 0.896 48 H 0.097 0.903 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.801 -18.378 9.195 29.960 hybrid contribution 0.965 0.132 0.134 0.983 sum -20.835 -18.246 9.329 29.225 Atomic orbital electron populations 1.21703 0.90543 1.06448 1.03521 1.30334 1.07067 1.22612 1.14064 1.05277 0.73179 0.79064 0.72835 1.93549 1.83767 1.74579 1.46460 1.93572 1.83668 1.74457 1.46192 1.57303 1.24202 1.90037 1.12372 1.21696 0.98657 1.02639 0.83105 1.21315 0.98710 0.96080 0.83988 1.22186 1.00444 1.00005 0.95970 1.21129 0.98111 0.82628 0.96370 1.45017 1.59195 1.12103 1.23247 1.16160 0.78878 0.83075 0.82214 1.90828 1.67238 1.42999 1.51393 1.44897 1.52496 1.09586 1.30363 1.20730 0.91372 0.95868 0.86016 1.19484 1.00272 0.90590 0.93976 1.20326 0.91044 1.38784 1.00993 0.93749 1.25724 0.97447 0.95488 0.98790 1.70022 1.04326 1.49419 1.34700 0.86022 0.78071 0.79544 0.80792 1.19172 1.23026 1.16460 1.22866 0.94104 0.98856 1.03062 1.23019 1.00608 1.04604 0.94605 0.91053 0.91176 0.87833 0.82722 0.82567 0.93384 0.89877 0.88498 0.88838 0.87124 0.90094 0.91606 0.92067 0.91692 0.75681 0.75884 0.94756 0.92905 0.92730 0.87922 0.89601 0.90272 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.92 71.98 0.71 -0.37 16 2 C -0.61 -3.33 6.90 71.98 0.50 -2.84 16 3 S 2.60 38.29 5.32 -56.49 -0.30 37.98 16 4 O -0.99 -21.58 17.09 -127.65 -2.18 -23.77 16 5 O -0.99 -21.97 16.74 -127.65 -2.14 -24.10 16 6 N -1.00 -11.56 3.12 -539.11 -1.68 -13.24 16 7 C 0.08 0.73 10.24 127.77 1.31 2.04 16 8 C 0.12 1.44 5.28 86.38 0.46 1.90 16 9 C -0.15 -2.49 5.65 30.60 0.17 -2.32 16 10 C 0.14 3.23 5.68 86.38 0.49 3.72 16 11 N -0.74 -20.60 5.56 -478.53 -2.66 -23.26 16 12 C 0.70 26.03 8.55 179.05 1.53 27.56 16 13 O -0.64 -28.62 16.36 -3.99 -0.07 -28.69 16 14 N -0.72 -27.12 5.46 -478.52 -2.61 -29.73 16 15 C 0.19 7.77 5.12 86.38 0.44 8.21 16 16 C -0.04 -1.81 0.81 -52.93 -0.04 -1.85 16 17 C -0.47 -25.24 9.29 25.60 0.24 -25.00 16 18 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 19 C 0.02 1.32 5.47 84.65 0.46 1.78 16 20 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 21 Si 0.93 44.48 24.88 68.60 1.71 46.19 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 24 H -0.24 -10.89 5.73 99.48 0.57 -10.32 16 25 C -0.15 -5.45 9.96 30.62 0.30 -5.15 16 26 C -0.19 -7.37 7.60 30.62 0.23 -7.14 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.08 0.49 7.79 -2.39 -0.02 0.47 16 34 H 0.10 0.42 7.94 -2.39 -0.02 0.40 16 35 H 0.09 0.93 7.61 -2.39 -0.02 0.91 16 36 H 0.11 0.74 7.96 -2.39 -0.02 0.73 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.41 9.41 8.49 -92.71 -0.79 8.63 16 42 H 0.41 13.97 8.47 -92.71 -0.79 13.19 16 43 H 0.03 1.63 6.65 -2.39 -0.02 1.61 16 44 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 45 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 46 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 47 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 48 H 0.08 3.25 7.27 -2.39 -0.02 3.23 16 49 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 Total: -1.00 -82.16 411.17 -3.58 -85.75 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.76 Total: 29.68 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 6.81 Total: 0.54 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.65 Total: -123.58 kcal Atomic # 8 Polarization: -72.17 SS G_CDS: -4.38 Total: -76.55 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.71 Total: 46.19 kcal Atomic # 16 Polarization: 38.29 SS G_CDS: -0.30 Total: 37.98 kcal Total: -82.16 -3.58 -85.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430174373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.757 kcal (2) G-P(sol) polarization free energy of solvation -82.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds