Wall clock time and date at job start Wed Apr 1 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81398 * 109.47372 * 2 1 4 4 O 1.42096 * 110.54176 * 68.37772 * 3 2 1 5 5 O 1.42101 * 110.54200 * 291.62666 * 3 2 1 6 6 N 1.65596 * 104.45031 * 180.02562 * 3 2 1 7 7 C 1.46500 * 120.00132 * 65.00111 * 6 3 2 8 8 H 1.09000 * 109.47070 * 334.99421 * 7 6 3 9 9 C 1.52997 * 109.47343 * 95.00139 * 7 6 3 10 10 C 1.50704 * 109.47172 * 215.00106 * 7 6 3 11 11 O 1.21283 * 119.99934 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00176 * 179.97438 * 10 7 6 13 13 C 1.46496 * 119.99962 * 179.97438 * 12 10 7 14 14 C 1.52999 * 109.47078 * 179.97438 * 13 12 10 15 15 C 1.53035 * 109.46495 * 295.03295 * 14 13 12 16 16 C 1.53188 * 109.31542 * 178.59824 * 15 14 13 17 17 N 1.46931 * 108.76611 * 54.65660 * 16 15 14 18 18 C 1.36932 * 120.63091 * 126.35696 * 17 16 15 19 19 H 1.07993 * 120.00742 * 331.86534 * 18 17 16 20 20 C 1.38820 * 119.99623 * 151.86310 * 18 17 16 21 21 N 1.31614 * 119.99981 * 343.06468 * 20 18 17 22 22 Si 1.86796 * 119.99918 * 163.06231 * 20 18 17 23 23 H 1.48506 * 109.47084 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47090 * 120.00248 * 22 20 18 25 25 H 1.48494 * 109.47484 * 240.00258 * 22 20 18 26 26 C 1.46923 * 118.73325 * 306.38605 * 17 16 15 27 27 C 1.53043 * 109.46118 * 174.97493 * 14 13 12 28 28 H 1.08997 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46833 * 299.99787 * 1 2 3 30 30 H 1.08994 * 109.47419 * 59.99403 * 1 2 3 31 31 H 1.09005 * 109.46833 * 240.00213 * 2 1 3 32 32 H 1.08994 * 109.47419 * 120.00597 * 2 1 3 33 33 H 0.97006 * 120.00058 * 245.00120 * 6 3 2 34 34 H 1.09001 * 109.47282 * 60.00030 * 9 7 6 35 35 H 1.08997 * 109.47164 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.46841 * 300.00258 * 9 7 6 37 37 H 0.96998 * 119.99464 * 0.02562 * 12 10 7 38 38 H 1.09001 * 109.47494 * 300.00059 * 13 12 10 39 39 H 1.09009 * 109.47105 * 60.00279 * 13 12 10 40 40 H 1.09003 * 109.45919 * 55.00426 * 14 13 12 41 41 H 1.09003 * 109.49878 * 298.56576 * 15 14 13 42 42 H 1.08998 * 109.49993 * 58.65432 * 15 14 13 43 43 H 1.08998 * 109.60162 * 294.86659 * 16 15 14 44 44 H 1.09009 * 109.70189 * 174.50301 * 16 15 14 45 45 H 0.97004 * 119.99904 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58818 * 293.81643 * 26 17 16 47 47 H 1.09004 * 109.70169 * 173.46488 * 26 17 16 48 48 H 1.09007 * 109.49703 * 301.34118 * 27 14 13 49 49 H 1.09000 * 109.49798 * 61.40149 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3437 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4666 0.9671 -1.1509 8 1 3.7805 0.3012 -1.6744 9 6 4.9287 2.0733 -2.1016 10 6 5.6618 0.1829 -0.6740 11 8 5.9187 0.1292 0.5101 12 7 6.4453 -0.4589 -1.5633 13 6 7.6075 -1.2208 -1.0996 14 6 8.3192 -1.8466 -2.3008 15 6 7.3975 -2.8744 -2.9611 16 6 8.0999 -3.4733 -4.1836 17 7 9.4013 -4.0115 -3.7645 18 6 9.7425 -5.3080 -4.0433 19 1 8.9733 -6.0595 -4.1430 20 6 11.0774 -5.6565 -4.1977 21 7 11.9808 -4.7232 -4.4098 22 14 11.5912 -7.4500 -4.1046 23 1 10.3951 -8.2956 -3.8603 24 1 12.2264 -7.8501 -5.3859 25 1 12.5605 -7.6302 -2.9941 26 6 10.3291 -3.1323 -3.0402 27 6 9.6016 -2.5370 -1.8306 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.2989 1.8763 0.7605 34 1 5.6148 2.7391 -1.5781 35 1 5.4360 1.6283 -2.9576 36 1 4.0642 2.6405 -2.4465 37 1 6.2400 -0.4157 -2.5103 38 1 8.2937 -0.5546 -0.5768 39 1 7.2786 -2.0086 -0.4218 40 1 8.5693 -1.0675 -3.0210 41 1 7.1671 -3.6669 -2.2491 42 1 6.4744 -2.3869 -3.2746 43 1 8.2499 -2.6983 -4.9353 44 1 7.4905 -4.2747 -4.6016 45 1 12.9136 -4.9667 -4.5173 46 1 10.6610 -2.3295 -3.6985 47 1 11.1912 -3.7070 -2.7015 48 1 10.2476 -1.8091 -1.3395 49 1 9.3504 -3.3323 -1.1289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597294822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:31 Heat of formation + Delta-G solvation = -101.841939 kcal Electronic energy + Delta-G solvation = -29089.644377 eV Core-core repulsion = 24985.992256 eV Total energy + Delta-G solvation = -4103.652121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.24224 -38.02066 -37.50622 -36.37369 -35.86104 -35.09145 -33.64870 -33.01563 -31.05260 -30.23640 -29.68245 -27.01756 -24.81893 -24.55857 -23.68249 -22.29586 -21.18485 -20.61653 -19.82917 -19.22377 -18.53925 -17.58299 -16.84033 -16.77900 -16.38731 -16.07208 -15.60884 -15.16412 -14.89304 -14.58601 -14.28511 -14.04113 -13.86165 -13.71752 -13.58486 -13.35480 -13.20547 -13.01911 -12.82656 -12.52018 -12.46482 -12.42663 -12.37302 -12.17308 -12.13891 -11.99916 -11.92360 -11.40992 -11.15828 -11.04403 -10.77934 -10.57827 -10.36429 -10.30056 -10.24466 -10.00942 -9.83013 -9.62356 -9.48792 -9.16625 -8.51901 -6.72165 -5.83734 -3.26313 -0.18698 2.17705 2.33317 2.97330 3.33614 3.36639 3.41936 3.43677 3.73005 4.06293 4.16756 4.33483 4.41484 4.45545 4.60342 4.68726 4.82367 5.01915 5.07235 5.13298 5.20770 5.28761 5.34222 5.36333 5.41532 5.50972 5.54438 5.76314 5.81656 5.83866 5.94623 6.04219 6.24463 6.27467 6.36519 6.52936 6.54692 6.60951 6.68699 6.73958 6.90543 7.27549 7.33193 7.60692 7.75413 7.95627 8.40524 9.16815 9.80217 10.36575 11.24784 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.001943 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.910228 B =14410.450486 C =14807.615063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.613 3.387 4 O -0.954 6.954 5 O -0.951 6.951 6 N -1.101 6.101 7 C 0.134 3.866 8 H 0.107 0.893 9 C -0.169 4.169 10 C 0.505 3.495 11 O -0.534 6.534 12 N -0.718 5.718 13 C 0.122 3.878 14 C -0.090 4.090 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.171 3.829 27 C -0.133 4.133 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.427 0.573 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.403 0.597 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.289 12.304 6.413 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.705 3.295 4 O -0.944 6.944 5 O -0.941 6.941 6 N -0.861 5.861 7 C 0.022 3.978 8 H 0.125 0.875 9 C -0.229 4.229 10 C 0.288 3.712 11 O -0.410 6.410 12 N -0.371 5.371 13 C -0.001 4.001 14 C -0.109 4.109 15 C -0.167 4.167 16 C 0.018 3.982 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.495 12.956 7.086 24.456 hybrid contribution 0.744 -1.617 -0.104 1.783 sum -18.751 11.339 6.982 22.998 Atomic orbital electron populations 1.21505 0.90229 1.05298 1.03512 1.30534 1.07510 1.26427 1.11978 1.05034 0.72737 0.77294 0.74475 1.93620 1.82785 1.73015 1.44995 1.93615 1.83181 1.71905 1.45414 1.55491 1.25834 1.77030 1.27746 1.20647 0.94387 0.95544 0.87186 0.87526 1.22303 1.03581 0.98448 0.98519 1.20594 0.84276 0.79632 0.86667 1.90713 1.72027 1.61821 1.16444 1.46089 1.28968 1.51560 1.10434 1.21642 0.86094 0.94745 0.97589 1.21323 0.96531 0.97616 0.95476 1.22082 0.96727 0.97954 0.99907 1.20888 0.88356 0.96193 0.92722 1.44052 1.14009 1.10117 1.63344 1.19210 0.91549 0.84355 1.43082 0.91717 1.25051 0.97088 0.97429 1.00115 1.70033 1.01372 1.31478 1.51811 0.86240 0.78363 0.84939 0.77324 1.20278 1.21725 1.21533 1.20759 0.92826 0.92772 0.89089 1.22179 0.95222 0.98941 1.00917 0.89825 0.90895 0.90825 0.85102 0.84589 0.73653 0.91179 0.90623 0.89530 0.76230 0.91580 0.91450 0.91181 0.92168 0.93503 0.96576 0.92876 0.93657 0.96423 0.89398 0.93044 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.92 37.16 0.37 -0.36 16 2 C -0.64 -3.38 6.68 37.16 0.25 -3.13 16 3 S 2.61 20.92 5.38 -107.50 -0.58 20.34 16 4 O -0.95 -10.88 18.08 -57.54 -1.04 -11.92 16 5 O -0.95 -9.73 17.11 -57.54 -0.98 -10.71 16 6 N -1.10 -8.79 5.15 -5.88 -0.03 -8.82 16 7 C 0.13 1.00 3.09 -69.08 -0.21 0.79 16 8 H 0.11 0.48 7.15 -51.93 -0.37 0.11 16 9 C -0.17 -1.15 9.41 37.16 0.35 -0.80 16 10 C 0.51 5.23 7.22 -10.98 -0.08 5.15 16 11 O -0.53 -7.47 15.99 5.55 0.09 -7.38 16 12 N -0.72 -6.99 5.16 -60.29 -0.31 -7.30 16 13 C 0.12 1.51 5.06 -4.04 -0.02 1.49 16 14 C -0.09 -1.28 2.19 -90.58 -0.20 -1.48 16 15 C -0.13 -1.88 5.25 -26.62 -0.14 -2.02 16 16 C 0.14 2.77 6.52 -3.71 -0.02 2.75 16 17 N -0.59 -14.07 2.99 -172.32 -0.52 -14.59 16 18 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 22 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.17 3.85 5.30 -3.71 -0.02 3.83 16 27 C -0.13 -2.30 5.36 -26.61 -0.14 -2.44 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.13 0.47 7.44 -51.92 -0.39 0.08 16 32 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.43 3.60 8.17 -34.47 -0.28 3.32 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.39 7.57 -51.93 -0.39 -0.01 16 36 H 0.09 0.62 7.42 -51.93 -0.39 0.24 16 37 H 0.40 3.00 7.07 -40.82 -0.29 2.71 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.54 7.15 -51.93 -0.37 0.17 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 1.01 7.93 -51.92 -0.41 0.60 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 48 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 400.47 15.07 6.04 6.04 Total: -1.00 -35.09 400.47 -10.09 -45.19 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.25 Total: 1.03 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.10 Total: -3.12 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.24 Total: -55.66 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.94 Total: -30.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: 20.92 SS G_CDS: -0.58 Total: 20.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.09 -10.09 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.656 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds