Wall clock time and date at job start Wed Apr 1 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81398 * 109.47372 * 2 1 4 4 O 1.42096 * 110.54176 * 68.37772 * 3 2 1 5 5 O 1.42101 * 110.54200 * 291.62666 * 3 2 1 6 6 N 1.65596 * 104.45031 * 180.02562 * 3 2 1 7 7 C 1.46500 * 120.00132 * 65.00111 * 6 3 2 8 8 H 1.09000 * 109.47070 * 334.99421 * 7 6 3 9 9 C 1.52997 * 109.47343 * 95.00139 * 7 6 3 10 10 C 1.50704 * 109.47172 * 215.00106 * 7 6 3 11 11 O 1.21283 * 119.99934 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00176 * 179.97438 * 10 7 6 13 13 C 1.46496 * 119.99962 * 179.97438 * 12 10 7 14 14 C 1.52999 * 109.47078 * 179.97438 * 13 12 10 15 15 C 1.53035 * 109.46495 * 295.03295 * 14 13 12 16 16 C 1.53188 * 109.31542 * 178.59824 * 15 14 13 17 17 N 1.46931 * 108.76611 * 54.65660 * 16 15 14 18 18 C 1.36932 * 120.63091 * 126.35696 * 17 16 15 19 19 H 1.07993 * 120.00742 * 331.86534 * 18 17 16 20 20 C 1.38820 * 119.99623 * 151.86310 * 18 17 16 21 21 N 1.31614 * 119.99981 * 343.06468 * 20 18 17 22 22 Si 1.86796 * 119.99918 * 163.06231 * 20 18 17 23 23 H 1.48506 * 109.47084 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47090 * 120.00248 * 22 20 18 25 25 H 1.48494 * 109.47484 * 240.00258 * 22 20 18 26 26 C 1.46923 * 118.73325 * 306.38605 * 17 16 15 27 27 C 1.53043 * 109.46118 * 174.97493 * 14 13 12 28 28 H 1.08997 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46833 * 299.99787 * 1 2 3 30 30 H 1.08994 * 109.47419 * 59.99403 * 1 2 3 31 31 H 1.09005 * 109.46833 * 240.00213 * 2 1 3 32 32 H 1.08994 * 109.47419 * 120.00597 * 2 1 3 33 33 H 0.97006 * 120.00058 * 245.00120 * 6 3 2 34 34 H 1.09001 * 109.47282 * 60.00030 * 9 7 6 35 35 H 1.08997 * 109.47164 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.46841 * 300.00258 * 9 7 6 37 37 H 0.96998 * 119.99464 * 0.02562 * 12 10 7 38 38 H 1.09001 * 109.47494 * 300.00059 * 13 12 10 39 39 H 1.09009 * 109.47105 * 60.00279 * 13 12 10 40 40 H 1.09003 * 109.45919 * 55.00426 * 14 13 12 41 41 H 1.09003 * 109.49878 * 298.56576 * 15 14 13 42 42 H 1.08998 * 109.49993 * 58.65432 * 15 14 13 43 43 H 1.08998 * 109.60162 * 294.86659 * 16 15 14 44 44 H 1.09009 * 109.70189 * 174.50301 * 16 15 14 45 45 H 0.97004 * 119.99904 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58818 * 293.81643 * 26 17 16 47 47 H 1.09004 * 109.70169 * 173.46488 * 26 17 16 48 48 H 1.09007 * 109.49703 * 301.34118 * 27 14 13 49 49 H 1.09000 * 109.49798 * 61.40149 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3437 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4666 0.9671 -1.1509 8 1 3.7805 0.3012 -1.6744 9 6 4.9287 2.0733 -2.1016 10 6 5.6618 0.1829 -0.6740 11 8 5.9187 0.1292 0.5101 12 7 6.4453 -0.4589 -1.5633 13 6 7.6075 -1.2208 -1.0996 14 6 8.3192 -1.8466 -2.3008 15 6 7.3975 -2.8744 -2.9611 16 6 8.0999 -3.4733 -4.1836 17 7 9.4013 -4.0115 -3.7645 18 6 9.7425 -5.3080 -4.0433 19 1 8.9733 -6.0595 -4.1430 20 6 11.0774 -5.6565 -4.1977 21 7 11.9808 -4.7232 -4.4098 22 14 11.5912 -7.4500 -4.1046 23 1 10.3951 -8.2956 -3.8603 24 1 12.2264 -7.8501 -5.3859 25 1 12.5605 -7.6302 -2.9941 26 6 10.3291 -3.1323 -3.0402 27 6 9.6016 -2.5370 -1.8306 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.2989 1.8763 0.7605 34 1 5.6148 2.7391 -1.5781 35 1 5.4360 1.6283 -2.9576 36 1 4.0642 2.6405 -2.4465 37 1 6.2400 -0.4157 -2.5103 38 1 8.2937 -0.5546 -0.5768 39 1 7.2786 -2.0086 -0.4218 40 1 8.5693 -1.0675 -3.0210 41 1 7.1671 -3.6669 -2.2491 42 1 6.4744 -2.3869 -3.2746 43 1 8.2499 -2.6983 -4.9353 44 1 7.4905 -4.2747 -4.6016 45 1 12.9136 -4.9667 -4.5173 46 1 10.6610 -2.3295 -3.6985 47 1 11.1912 -3.7070 -2.7015 48 1 10.2476 -1.8091 -1.3395 49 1 9.3504 -3.3323 -1.1289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597294822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:30 Heat of formation + Delta-G solvation = -129.202572 kcal Electronic energy + Delta-G solvation = -29090.830823 eV Core-core repulsion = 24985.992256 eV Total energy + Delta-G solvation = -4104.838567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.08529 -39.39130 -38.23091 -37.08670 -36.67681 -36.22954 -34.50893 -34.04114 -32.59659 -31.45490 -30.78312 -28.38072 -26.08717 -24.97348 -24.81334 -23.76086 -22.60601 -21.45333 -20.66380 -20.40184 -19.26379 -18.65189 -18.25100 -17.37084 -17.22336 -16.89850 -16.68400 -16.41528 -15.84713 -15.70627 -15.28157 -15.14385 -15.10013 -14.80561 -14.74624 -14.23979 -14.05601 -13.98894 -13.80797 -13.51579 -13.41925 -13.32621 -13.24309 -13.12943 -12.99538 -12.80860 -12.76297 -12.66700 -12.57371 -12.38474 -12.21997 -11.97978 -11.81461 -11.70452 -11.58299 -11.23240 -11.07526 -10.95037 -10.54685 -10.47517 -10.06403 -8.64684 -7.86219 -5.30688 -0.77263 1.45530 1.48253 1.54918 1.57729 1.58100 2.20228 2.51979 2.78808 3.18839 3.28491 3.51706 3.71345 3.74318 3.81656 3.88386 3.94551 3.98718 4.05465 4.12424 4.29018 4.39412 4.56031 4.58172 4.71428 4.74188 4.76640 4.82716 4.85333 4.87209 4.97243 5.00362 5.06075 5.12461 5.18053 5.32250 5.32663 5.34662 5.41070 5.48270 5.58613 5.68462 5.82224 5.90340 6.41629 6.54819 7.17605 7.19893 7.90745 8.40503 9.19801 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.001943 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.910228 B =14410.450486 C =14807.615063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.618 4.618 3 S 2.619 3.381 4 O -0.995 6.995 5 O -0.977 6.977 6 N -1.105 6.105 7 C 0.133 3.867 8 H 0.144 0.856 9 C -0.171 4.171 10 C 0.508 3.492 11 O -0.572 6.572 12 N -0.708 5.708 13 C 0.136 3.864 14 C -0.079 4.079 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.613 5.613 18 C -0.258 4.258 19 H 0.065 0.935 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.177 3.823 27 C -0.123 4.123 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.423 0.577 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.417 0.583 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.051 0.949 45 H 0.249 0.751 46 H -0.002 1.002 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.463 11.982 6.144 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.751 4.751 3 S 2.715 3.285 4 O -0.986 6.986 5 O -0.967 6.967 6 N -0.864 5.864 7 C 0.022 3.978 8 H 0.161 0.839 9 C -0.230 4.230 10 C 0.293 3.707 11 O -0.451 6.451 12 N -0.361 5.361 13 C 0.012 3.988 14 C -0.098 4.098 15 C -0.153 4.153 16 C 0.013 3.987 17 N -0.337 5.337 18 C -0.388 4.388 19 H 0.083 0.917 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.051 3.949 27 C -0.162 4.162 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.175 0.825 32 H 0.165 0.835 33 H 0.259 0.741 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.255 0.745 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.016 0.984 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.701 12.680 6.789 26.034 hybrid contribution 1.379 -1.531 -0.063 2.062 sum -20.322 11.148 6.726 24.135 Atomic orbital electron populations 1.21684 0.89899 1.06460 1.03854 1.30389 1.07756 1.23051 1.13892 1.04706 0.72394 0.78402 0.73037 1.93564 1.83362 1.75120 1.46547 1.93577 1.83480 1.73727 1.45952 1.55441 1.25747 1.77263 1.27919 1.20852 0.93895 0.95958 0.87089 0.83888 1.22341 1.03459 0.98212 0.98956 1.21032 0.84590 0.79076 0.86017 1.90707 1.73058 1.63139 1.18222 1.45912 1.28019 1.50959 1.11245 1.21276 0.86746 0.94569 0.96196 1.21154 0.94894 0.97414 0.96309 1.21940 0.97965 0.97872 0.97537 1.21105 0.86500 0.96297 0.94818 1.44346 1.15649 1.09660 1.63998 1.19525 0.91654 0.85920 1.41735 0.91724 1.25764 0.97307 1.00938 1.00800 1.70177 1.01257 1.33147 1.53554 0.85279 0.77989 0.80899 0.76726 1.19120 1.22030 1.21878 1.20558 0.92355 0.91544 0.90464 1.21974 0.96816 0.99134 0.98300 0.88152 0.91097 0.90271 0.82462 0.83513 0.74103 0.92119 0.88481 0.89869 0.74501 0.92007 0.92275 0.90296 0.93079 0.89073 0.96332 0.93065 0.94224 0.98393 0.93340 0.91478 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.92 71.98 0.71 -0.46 16 2 C -0.62 -4.65 6.68 71.98 0.48 -4.17 16 3 S 2.62 38.39 5.38 -56.49 -0.30 38.09 16 4 O -1.00 -22.65 18.08 -127.65 -2.31 -24.96 16 5 O -0.98 -18.65 17.11 -127.65 -2.18 -20.84 16 6 N -1.11 -15.87 5.15 -172.52 -0.89 -16.76 16 7 C 0.13 1.58 3.09 44.25 0.14 1.72 16 8 H 0.14 0.63 7.15 -2.39 -0.02 0.61 16 9 C -0.17 -1.85 9.41 71.98 0.68 -1.18 16 10 C 0.51 9.05 7.22 87.66 0.63 9.68 16 11 O -0.57 -15.01 15.99 -3.04 -0.05 -15.06 16 12 N -0.71 -11.17 5.16 -463.05 -2.39 -13.56 16 13 C 0.14 2.96 5.06 86.38 0.44 3.40 16 14 C -0.08 -2.02 2.19 -10.77 -0.02 -2.04 16 15 C -0.11 -3.01 5.25 30.67 0.16 -2.85 16 16 C 0.14 5.05 6.52 86.36 0.56 5.61 16 17 N -0.61 -29.15 2.99 -699.09 -2.09 -31.24 16 18 C -0.26 -13.79 9.58 84.04 0.81 -12.98 16 19 H 0.07 3.38 7.88 -2.91 -0.02 3.36 16 20 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 21 N -0.93 -54.52 11.19 21.65 0.24 -54.28 16 22 Si 0.96 44.24 29.59 68.60 2.03 46.27 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 26 C 0.18 8.08 5.30 86.36 0.46 8.54 16 27 C -0.12 -4.15 5.36 30.67 0.16 -3.98 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.16 0.38 7.44 -2.39 -0.02 0.37 16 32 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.42 6.89 8.17 -96.74 -0.79 6.10 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.62 7.57 -2.39 -0.02 0.60 16 36 H 0.08 1.01 7.42 -2.39 -0.02 0.99 16 37 H 0.42 4.18 7.07 -92.71 -0.66 3.53 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.64 7.15 -2.39 -0.02 1.62 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 1.86 7.93 -2.38 -0.02 1.84 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.05 2.58 6.06 -2.38 -0.01 2.57 16 48 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 49 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -78.71 400.47 -2.81 -81.52 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.49 Total: 12.02 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.62 Total: -1.21 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.13 Total: -115.84 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -4.54 Total: -60.85 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 38.39 SS G_CDS: -0.30 Total: 38.09 kcal Total: -78.71 -2.81 -81.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.682 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds