Wall clock time and date at job start Wed Apr 1 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 C 1.50696 * 109.47005 * 275.00355 * 3 2 1 5 5 H 1.07999 * 120.00504 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00164 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99538 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00254 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47043 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.46913 * 119.99585 * 8 6 4 11 11 H 1.48498 * 109.46937 * 240.00035 * 8 6 4 12 12 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40241 * 336.45887 * 12 2 1 14 14 O 1.42096 * 106.40379 * 203.53509 * 12 2 1 15 15 N 1.65608 * 107.21718 * 89.99671 * 12 2 1 16 16 C 1.46927 * 120.63047 * 269.72167 * 15 12 2 17 17 C 1.52758 * 109.00682 * 233.58217 * 16 15 12 18 18 C 1.53039 * 109.38439 * 305.58958 * 17 16 15 19 19 N 1.46897 * 109.45887 * 181.26113 * 18 17 16 20 20 C 1.47015 * 111.00123 * 183.57137 * 19 18 17 21 21 C 1.53093 * 109.26121 * 177.60932 * 20 19 18 22 22 O 1.43022 * 109.26099 * 56.84172 * 21 20 19 23 23 C 1.43009 * 113.73862 * 301.33485 * 22 21 20 24 24 C 1.47013 * 111.00165 * 59.93105 * 19 18 17 25 25 C 1.53041 * 109.53647 * 61.24252 * 18 17 16 26 26 C 1.46923 * 120.62912 * 89.99934 * 15 12 2 27 27 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 28 28 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 29 29 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 30 30 H 1.09001 * 109.47107 * 35.00108 * 3 2 1 31 31 H 1.08998 * 109.47122 * 155.00223 * 3 2 1 32 32 H 0.97010 * 119.99744 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.58448 * 353.42297 * 16 15 12 34 34 H 1.09005 * 109.57966 * 113.84390 * 16 15 12 35 35 H 1.08998 * 109.56153 * 185.55612 * 17 16 15 36 36 H 1.08997 * 109.35812 * 65.50160 * 17 16 15 37 37 H 1.09005 * 109.46008 * 301.21774 * 18 17 16 38 38 H 1.09006 * 109.50360 * 297.53994 * 20 19 18 39 39 H 1.08997 * 109.51309 * 57.66668 * 20 19 18 40 40 H 1.09000 * 109.50824 * 296.91229 * 21 20 19 41 41 H 1.08998 * 109.54916 * 176.80071 * 21 20 19 42 42 H 1.09003 * 109.50727 * 298.73050 * 23 22 21 43 43 H 1.09004 * 109.54302 * 178.62283 * 23 22 21 44 44 H 1.08993 * 109.50846 * 302.32942 * 24 19 18 45 45 H 1.09005 * 109.50355 * 62.41734 * 24 19 18 46 46 H 1.09004 * 109.49946 * 178.68516 * 25 18 17 47 47 H 1.08997 * 109.50160 * 58.58619 * 25 18 17 48 48 H 1.08998 * 109.59009 * 246.15596 * 26 15 12 49 49 H 1.09006 * 109.58796 * 6.58355 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6469 -0.6707 8 14 3.1795 3.5661 -3.4210 9 1 2.5319 2.6063 -4.3509 10 1 2.5287 4.8948 -3.5481 11 1 4.6205 3.6863 -3.7589 12 16 2.2931 -1.4341 0.0006 13 8 1.4115 -2.4063 0.5455 14 8 3.5760 -1.1564 0.5448 15 7 2.5381 -1.8593 -1.5810 16 6 1.5570 -2.6888 -2.2938 17 6 2.2713 -3.8973 -2.8961 18 6 3.4376 -3.4179 -3.7632 19 7 4.1072 -4.5774 -4.3674 20 6 5.2862 -4.1611 -5.1407 21 6 5.9860 -5.4018 -5.7017 22 8 5.0577 -6.1507 -6.4909 23 6 3.8976 -6.5728 -5.7690 24 6 3.1766 -5.3439 -5.2086 25 6 4.4362 -2.6468 -2.8969 26 6 3.7437 -1.4194 -2.2963 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5895 31 1 3.1857 1.1177 0.4343 32 1 3.9668 4.4807 -0.8473 33 1 0.7909 -3.0287 -1.5969 34 1 1.0959 -2.1056 -3.0910 35 1 1.5722 -4.4663 -3.5090 36 1 2.6505 -4.5299 -2.0936 37 1 3.0605 -2.7655 -4.5508 38 1 4.9736 -3.5167 -5.9624 39 1 5.9735 -3.6175 -4.4924 40 1 6.3460 -6.0199 -4.8792 41 1 6.8280 -5.0961 -6.3228 42 1 4.1968 -7.2249 -4.9484 43 1 3.2284 -7.1136 -6.4382 44 1 2.3238 -5.6638 -4.6098 45 1 2.8296 -4.7182 -6.0310 46 1 5.2781 -2.3257 -3.5103 47 1 4.7951 -3.2911 -2.0943 48 1 3.4646 -0.7306 -3.0937 49 1 4.4200 -0.9220 -1.6010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599501538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:34 Heat of formation + Delta-G solvation = -106.942361 kcal Electronic energy + Delta-G solvation = -30949.558071 eV Core-core repulsion = 26845.684779 eV Total energy + Delta-G solvation = -4103.873292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.12268 -38.20877 -36.72657 -35.51138 -35.43786 -35.21285 -32.51590 -31.86095 -31.16272 -30.69016 -27.81184 -26.97632 -25.09700 -24.72222 -23.27509 -22.55115 -22.26704 -20.81067 -20.13602 -18.37115 -17.50436 -16.85408 -16.72609 -16.34865 -16.32610 -15.72407 -15.43534 -15.16758 -14.85007 -14.75795 -14.48722 -14.29414 -14.15399 -13.56686 -13.40444 -13.27480 -13.11496 -12.86123 -12.38909 -12.21794 -12.16380 -12.04586 -11.86114 -11.71818 -11.61635 -11.40625 -11.35549 -11.19800 -11.15446 -10.99908 -10.80985 -10.71095 -10.58327 -10.45299 -10.27917 -10.09137 -9.88279 -9.79527 -8.74610 -8.56091 -8.52991 -8.04692 -6.14788 -4.21457 1.23922 3.19912 3.28410 3.29889 3.41036 3.50763 3.66102 4.09765 4.32305 4.54313 4.66065 4.71957 4.78898 4.89720 4.90837 5.01254 5.10051 5.13478 5.19370 5.26465 5.28717 5.39068 5.39503 5.47524 5.50825 5.55127 5.58294 5.65466 5.72228 5.79195 5.81522 5.90334 6.05326 6.07449 6.17927 6.23354 6.40918 6.45488 6.55341 6.75721 6.84736 6.88423 6.91686 7.31558 7.41545 7.61455 7.82414 8.11952 8.83939 9.44632 10.93237 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003710 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.391649 B = 7546.334177 C = 9014.029381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.998 5.998 3 C 0.244 3.756 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.787 3.213 13 O -0.999 6.999 14 O -0.976 6.976 15 N -1.002 6.002 16 C 0.123 3.877 17 C -0.123 4.123 18 C 0.088 3.912 19 N -0.533 5.533 20 C 0.012 3.988 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.014 3.986 25 C -0.127 4.127 26 C 0.129 3.871 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.041 0.959 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -16.169 -8.891 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.796 3.204 13 O -0.983 6.983 14 O -0.960 6.960 15 N -0.841 5.841 16 C -0.003 4.003 17 C -0.162 4.162 18 C -0.019 4.019 19 N -0.259 5.259 20 C -0.116 4.116 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.114 4.114 25 C -0.166 4.166 26 C 0.003 3.997 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.429 -16.809 -7.875 18.568 hybrid contribution -0.393 1.454 -1.780 2.331 sum -0.822 -15.356 -9.655 18.158 Atomic orbital electron populations 1.21204 0.80195 1.01980 1.00576 1.57679 1.14175 1.23529 1.88566 1.19222 0.92172 0.78922 0.97544 1.21579 1.36420 1.06794 0.92927 0.91901 1.24956 0.95256 0.96534 0.97130 1.69946 1.36793 1.15145 1.30820 0.86542 0.77919 0.78831 0.84697 1.19793 1.20953 1.20833 1.01717 0.73100 0.72622 0.72938 1.93519 1.67455 1.60412 1.76949 1.93562 1.40768 1.85270 1.76430 1.58156 1.29450 1.64427 1.32051 1.21227 0.90889 0.91061 0.97174 1.21880 0.96719 0.97981 0.99633 1.21617 0.94462 0.90102 0.95762 1.62256 1.07623 1.23447 1.32542 1.22859 0.94051 0.97633 0.97014 1.22673 0.91539 0.91745 0.95297 1.87970 1.32099 1.72822 1.37827 1.22655 0.87178 0.95119 0.96301 1.22836 0.96324 0.96135 0.96145 1.22044 0.97620 0.97370 0.99573 1.21343 0.85583 0.95030 0.97788 0.93784 0.90852 0.93040 0.94494 0.93134 0.92624 0.89118 0.91794 0.91059 0.90544 0.93693 0.93944 0.88879 0.92259 0.88555 0.92295 0.88653 0.89193 0.94039 0.90856 0.90639 0.91120 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.83 10.31 59.85 0.62 2.44 16 2 N -1.00 -20.51 3.23 -123.05 -0.40 -20.91 16 3 C 0.24 5.98 5.41 -5.19 -0.03 5.95 16 4 C -0.54 -13.70 9.38 -34.44 -0.32 -14.02 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 8 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 S 2.79 55.16 6.11 -107.50 -0.66 54.51 16 13 O -1.00 -20.19 15.79 -57.17 -0.90 -21.09 16 14 O -0.98 -22.39 15.28 -57.17 -0.87 -23.26 16 15 N -1.00 -16.47 3.35 -113.77 -0.38 -16.85 16 16 C 0.12 1.63 6.45 -3.93 -0.03 1.61 16 17 C -0.12 -1.41 5.15 -26.84 -0.14 -1.54 16 18 C 0.09 1.03 1.90 -67.67 -0.13 0.90 16 19 N -0.53 -5.70 4.59 -226.28 -1.04 -6.74 16 20 C 0.01 0.12 5.25 -3.71 -0.02 0.10 16 21 C 0.06 0.59 7.01 37.21 0.26 0.85 16 22 O -0.39 -4.15 10.83 -35.23 -0.38 -4.53 16 23 C 0.06 0.56 7.01 37.21 0.26 0.82 16 24 C 0.01 0.13 5.34 -3.71 -0.02 0.11 16 25 C -0.13 -1.64 5.06 -26.61 -0.13 -1.77 16 26 C 0.13 2.05 6.48 -3.71 -0.02 2.03 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.82 16 29 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 30 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.67 6.28 -51.93 -0.33 0.34 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.87 6.08 -51.93 -0.32 0.56 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.74 6.15 -51.93 -0.32 0.42 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.84 6.22 -51.93 -0.32 0.52 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.10 1.82 6.92 -51.93 -0.36 1.46 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -31.58 386.81 -11.11 -42.69 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.22 Total: 0.33 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 0.20 Total: -0.92 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -1.08 Total: -68.72 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -2.16 Total: -48.89 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 55.16 SS G_CDS: -0.66 Total: 54.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.58 -11.11 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599501538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.252 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds