Wall clock time and date at job start Wed Apr 1 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 C 1.50696 * 109.47005 * 275.00355 * 3 2 1 5 5 H 1.07999 * 120.00504 * 359.97438 * 4 3 2 6 6 C 1.37885 * 120.00164 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99538 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00254 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47043 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.46913 * 119.99585 * 8 6 4 11 11 H 1.48498 * 109.46937 * 240.00035 * 8 6 4 12 12 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40241 * 336.45887 * 12 2 1 14 14 O 1.42096 * 106.40379 * 203.53509 * 12 2 1 15 15 N 1.65608 * 107.21718 * 89.99671 * 12 2 1 16 16 C 1.46927 * 120.63047 * 269.72167 * 15 12 2 17 17 C 1.52758 * 109.00682 * 233.58217 * 16 15 12 18 18 C 1.53039 * 109.38439 * 305.58958 * 17 16 15 19 19 N 1.46897 * 109.45887 * 181.26113 * 18 17 16 20 20 C 1.47015 * 111.00123 * 183.57137 * 19 18 17 21 21 C 1.53093 * 109.26121 * 177.60932 * 20 19 18 22 22 O 1.43022 * 109.26099 * 56.84172 * 21 20 19 23 23 C 1.43009 * 113.73862 * 301.33485 * 22 21 20 24 24 C 1.47013 * 111.00165 * 59.93105 * 19 18 17 25 25 C 1.53041 * 109.53647 * 61.24252 * 18 17 16 26 26 C 1.46923 * 120.62912 * 89.99934 * 15 12 2 27 27 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 28 28 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 29 29 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 30 30 H 1.09001 * 109.47107 * 35.00108 * 3 2 1 31 31 H 1.08998 * 109.47122 * 155.00223 * 3 2 1 32 32 H 0.97010 * 119.99744 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.58448 * 353.42297 * 16 15 12 34 34 H 1.09005 * 109.57966 * 113.84390 * 16 15 12 35 35 H 1.08998 * 109.56153 * 185.55612 * 17 16 15 36 36 H 1.08997 * 109.35812 * 65.50160 * 17 16 15 37 37 H 1.09005 * 109.46008 * 301.21774 * 18 17 16 38 38 H 1.09006 * 109.50360 * 297.53994 * 20 19 18 39 39 H 1.08997 * 109.51309 * 57.66668 * 20 19 18 40 40 H 1.09000 * 109.50824 * 296.91229 * 21 20 19 41 41 H 1.08998 * 109.54916 * 176.80071 * 21 20 19 42 42 H 1.09003 * 109.50727 * 298.73050 * 23 22 21 43 43 H 1.09004 * 109.54302 * 178.62283 * 23 22 21 44 44 H 1.08993 * 109.50846 * 302.32942 * 24 19 18 45 45 H 1.09005 * 109.50355 * 62.41734 * 24 19 18 46 46 H 1.09004 * 109.49946 * 178.68516 * 25 18 17 47 47 H 1.08997 * 109.50160 * 58.58619 * 25 18 17 48 48 H 1.08998 * 109.59009 * 246.15596 * 26 15 12 49 49 H 1.09006 * 109.58796 * 6.58355 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6469 -0.6707 8 14 3.1795 3.5661 -3.4210 9 1 2.5319 2.6063 -4.3509 10 1 2.5287 4.8948 -3.5481 11 1 4.6205 3.6863 -3.7589 12 16 2.2931 -1.4341 0.0006 13 8 1.4115 -2.4063 0.5455 14 8 3.5760 -1.1564 0.5448 15 7 2.5381 -1.8593 -1.5810 16 6 1.5570 -2.6888 -2.2938 17 6 2.2713 -3.8973 -2.8961 18 6 3.4376 -3.4179 -3.7632 19 7 4.1072 -4.5774 -4.3674 20 6 5.2862 -4.1611 -5.1407 21 6 5.9860 -5.4018 -5.7017 22 8 5.0577 -6.1507 -6.4909 23 6 3.8976 -6.5728 -5.7690 24 6 3.1766 -5.3439 -5.2086 25 6 4.4362 -2.6468 -2.8969 26 6 3.7437 -1.4194 -2.2963 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5895 31 1 3.1857 1.1177 0.4343 32 1 3.9668 4.4807 -0.8473 33 1 0.7909 -3.0287 -1.5969 34 1 1.0959 -2.1056 -3.0910 35 1 1.5722 -4.4663 -3.5090 36 1 2.6505 -4.5299 -2.0936 37 1 3.0605 -2.7655 -4.5508 38 1 4.9736 -3.5167 -5.9624 39 1 5.9735 -3.6175 -4.4924 40 1 6.3460 -6.0199 -4.8792 41 1 6.8280 -5.0961 -6.3228 42 1 4.1968 -7.2249 -4.9484 43 1 3.2284 -7.1136 -6.4382 44 1 2.3238 -5.6638 -4.6098 45 1 2.8296 -4.7182 -6.0310 46 1 5.2781 -2.3257 -3.5103 47 1 4.7951 -3.2911 -2.0943 48 1 3.4646 -0.7306 -3.0937 49 1 4.4200 -0.9220 -1.6010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599501538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:33 Heat of formation + Delta-G solvation = -130.684174 kcal Electronic energy + Delta-G solvation = -30950.587593 eV Core-core repulsion = 26845.684779 eV Total energy + Delta-G solvation = -4104.902814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94955 -39.17791 -38.38593 -37.20462 -36.90333 -36.40058 -34.47690 -32.71695 -32.18744 -31.62768 -29.65551 -27.83067 -26.77065 -25.56247 -24.41774 -24.06050 -23.51864 -21.68787 -21.09988 -19.80977 -18.95769 -18.51341 -18.25511 -17.59039 -17.30540 -17.03045 -16.55107 -16.19345 -15.97267 -15.76988 -15.62868 -15.41304 -15.18797 -15.07855 -14.92322 -14.42594 -14.25833 -14.00034 -13.97246 -13.76958 -13.42599 -13.39985 -13.19290 -13.01393 -12.92355 -12.84486 -12.58216 -12.53888 -12.47505 -12.39828 -12.28864 -12.11667 -11.93877 -11.70266 -11.51451 -11.41476 -11.24782 -10.62783 -10.59324 -10.02788 -9.74009 -9.36965 -8.16561 -6.30418 -0.32790 1.42152 1.44041 1.54751 1.96171 2.42004 2.54901 2.67890 2.98306 3.15369 3.35215 3.67621 3.69117 3.95598 4.00938 4.03850 4.13049 4.19095 4.23025 4.31216 4.32617 4.36793 4.44311 4.51587 4.57622 4.69454 4.71394 4.73649 4.78814 4.82149 4.82625 4.84706 4.93487 4.98205 5.04722 5.05553 5.15552 5.23796 5.28541 5.35918 5.46825 5.64134 5.76430 5.96223 5.98766 6.01301 6.10315 6.20195 6.82066 7.39906 8.91997 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003710 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.391649 B = 7546.334177 C = 9014.029381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.005 6.005 3 C 0.258 3.742 4 C -0.536 4.536 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.930 5.930 8 Si 0.959 3.041 9 H -0.258 1.258 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.797 3.203 13 O -1.003 7.003 14 O -1.015 7.015 15 N -0.998 5.998 16 C 0.116 3.884 17 C -0.117 4.117 18 C 0.093 3.907 19 N -0.540 5.540 20 C 0.012 3.988 21 C 0.065 3.935 22 O -0.407 6.407 23 C 0.063 3.937 24 C 0.014 3.986 25 C -0.119 4.119 26 C 0.128 3.872 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.265 0.735 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.060 0.940 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.037 0.963 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -17.694 -11.347 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.846 5.846 3 C 0.134 3.866 4 C -0.575 4.575 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.569 5.569 8 Si 0.784 3.216 9 H -0.182 1.182 10 H -0.209 1.209 11 H -0.207 1.207 12 S 2.807 3.193 13 O -0.987 6.987 14 O -0.999 6.999 15 N -0.839 5.839 16 C -0.010 4.010 17 C -0.157 4.157 18 C -0.015 4.015 19 N -0.265 5.265 20 C -0.116 4.116 21 C -0.012 4.012 22 O -0.326 6.326 23 C -0.014 4.014 24 C -0.114 4.114 25 C -0.159 4.159 26 C 0.002 3.998 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.056 0.944 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.482 -18.363 -10.328 21.121 hybrid contribution -0.102 1.856 -0.989 2.106 sum -1.583 -16.507 -11.317 20.077 Atomic orbital electron populations 1.21451 0.78069 1.03384 1.01808 1.57614 1.15665 1.22192 1.89148 1.18769 0.90758 0.80138 0.96912 1.21819 1.35717 1.06659 0.93332 0.90923 1.25809 0.94997 0.96873 1.01116 1.70080 1.37968 1.15726 1.33166 0.85494 0.77821 0.78329 0.79953 1.18169 1.20881 1.20749 1.01228 0.72163 0.72293 0.73656 1.93504 1.67352 1.60151 1.77670 1.93510 1.42717 1.85730 1.77927 1.57924 1.30323 1.64585 1.31108 1.21536 0.90449 0.91517 0.97454 1.21851 0.97068 0.97125 0.99608 1.21503 0.94056 0.90415 0.95495 1.62251 1.08072 1.22924 1.33240 1.22889 0.93927 0.98022 0.96773 1.22747 0.91659 0.91255 0.95530 1.87949 1.32831 1.73019 1.38762 1.22794 0.86935 0.94958 0.96726 1.22902 0.96462 0.96018 0.95983 1.21963 0.98218 0.96038 0.99668 1.21338 0.85153 0.96431 0.96888 0.92749 0.90753 0.90286 0.96399 0.96480 0.92599 0.88716 0.90164 0.88218 0.91445 0.93710 0.94514 0.88675 0.92156 0.87108 0.92163 0.86789 0.87896 0.94426 0.89433 0.91448 0.91133 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.24 10.31 127.77 1.32 4.55 16 2 N -1.01 -41.48 3.23 -543.23 -1.75 -43.24 16 3 C 0.26 13.04 5.41 85.63 0.46 13.50 16 4 C -0.54 -27.40 9.38 25.60 0.24 -27.16 16 5 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 6 C 0.01 0.60 5.46 84.66 0.46 1.07 16 7 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 8 Si 0.96 41.09 29.54 68.60 2.03 43.11 16 9 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 S 2.80 111.12 6.11 -56.49 -0.34 110.77 16 13 O -1.00 -39.65 15.79 -128.00 -2.02 -41.67 16 14 O -1.01 -48.27 15.28 -128.00 -1.96 -50.23 16 15 N -1.00 -31.97 3.35 -513.85 -1.72 -33.69 16 16 C 0.12 2.78 6.45 86.22 0.56 3.34 16 17 C -0.12 -2.36 5.15 30.53 0.16 -2.21 16 18 C 0.09 1.97 1.90 44.94 0.09 2.05 16 19 N -0.54 -10.29 4.59 -869.82 -4.00 -14.28 16 20 C 0.01 0.21 5.25 86.31 0.45 0.67 16 21 C 0.06 1.06 7.01 72.01 0.50 1.56 16 22 O -0.41 -7.83 10.83 -148.98 -1.61 -9.44 16 23 C 0.06 0.93 7.01 72.02 0.50 1.44 16 24 C 0.01 0.22 5.34 86.32 0.46 0.68 16 25 C -0.12 -2.96 5.06 30.67 0.16 -2.81 16 26 C 0.13 4.05 6.48 86.36 0.56 4.61 16 27 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 29 H 0.08 2.14 7.79 -2.39 -0.02 2.13 16 30 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 31 H 0.02 0.98 6.91 -2.39 -0.02 0.96 16 32 H 0.27 14.36 8.31 -92.70 -0.77 13.59 16 33 H 0.09 2.23 6.91 -2.39 -0.02 2.21 16 34 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.10 1.47 6.28 -2.39 -0.02 1.46 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.10 1.63 6.08 -2.39 -0.01 1.61 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.10 1.33 6.15 -2.39 -0.01 1.31 16 45 H 0.04 0.63 8.14 -2.38 -0.02 0.62 16 46 H 0.09 1.90 6.22 -2.38 -0.01 1.89 16 47 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.07 2.69 6.92 -2.38 -0.02 2.67 16 Total: -1.00 -68.26 386.81 -4.25 -72.51 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.93 Total: 17.92 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.92 Total: 1.29 kcal Atomic # 7 Polarization: -137.08 SS G_CDS: -7.19 Total: -144.26 kcal Atomic # 8 Polarization: -95.75 SS G_CDS: -5.59 Total: -101.34 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 111.12 SS G_CDS: -0.34 Total: 110.77 kcal Total: -68.26 -4.25 -72.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599501538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.178 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds