Wall clock time and date at job start Wed Apr 1 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 H 1.07995 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00052 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00263 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46960 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47261 * 120.00377 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00817 * 8 6 4 12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1 14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1 15 15 N 1.65600 * 107.21815 * 89.99936 * 12 2 1 16 16 C 1.46924 * 120.63297 * 90.00135 * 15 12 2 17 17 C 1.53190 * 108.77593 * 126.36566 * 16 15 12 18 18 C 1.53043 * 109.31131 * 54.63996 * 17 16 15 19 19 C 1.53041 * 109.53387 * 298.62854 * 18 17 16 20 20 H 1.08999 * 109.50368 * 301.41705 * 19 18 17 21 21 N 1.46906 * 109.49907 * 181.35310 * 19 18 17 22 22 C 1.47006 * 111.00209 * 183.63959 * 21 19 18 23 23 C 1.53097 * 109.25669 * 177.60789 * 22 21 19 24 24 O 1.43015 * 109.26015 * 56.84350 * 23 22 21 25 25 C 1.43011 * 113.74091 * 301.33098 * 24 23 22 26 26 C 1.47019 * 110.99759 * 59.99724 * 21 19 18 27 27 C 1.46933 * 120.62824 * 269.71746 * 15 12 2 28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 31 31 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 32 32 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 33 33 H 0.97000 * 119.99965 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.58392 * 246.15496 * 16 15 12 35 35 H 1.08994 * 109.58378 * 6.57796 * 16 15 12 36 36 H 1.09002 * 109.49598 * 174.58330 * 17 16 15 37 37 H 1.08997 * 109.49957 * 294.65394 * 17 16 15 38 38 H 1.08998 * 109.46215 * 58.65359 * 18 17 16 39 39 H 1.09004 * 109.45926 * 178.61376 * 18 17 16 40 40 H 1.09002 * 109.50381 * 297.54011 * 22 21 19 41 41 H 1.09001 * 109.50863 * 57.67298 * 22 21 19 42 42 H 1.09003 * 109.50601 * 296.90909 * 23 22 21 43 43 H 1.09005 * 109.50805 * 176.77997 * 23 22 21 44 44 H 1.08998 * 109.50641 * 298.73557 * 25 24 23 45 45 H 1.09002 * 109.50722 * 178.60501 * 25 24 23 46 46 H 1.08993 * 109.50788 * 302.33247 * 26 21 19 47 47 H 1.08999 * 109.50224 * 62.46550 * 26 21 19 48 48 H 1.09001 * 109.58560 * 353.42094 * 27 15 12 49 49 H 1.08996 * 109.58285 * 113.84684 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5035 3.6468 0.6707 8 14 3.1798 3.5659 3.4209 9 1 2.5322 2.6060 4.3508 10 1 4.6208 3.6861 3.7587 11 1 2.5290 4.8946 3.5482 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1571 0.5439 14 8 1.4113 -2.4067 0.5434 15 7 2.5381 -1.8580 -1.5826 16 6 3.7437 -1.4176 -2.2975 17 6 4.4361 -2.6445 -2.8991 18 6 3.4375 -3.4148 -3.7662 19 6 2.2711 -3.8949 -2.8995 20 1 2.6503 -4.5282 -2.0974 21 7 1.3293 -4.6618 -3.7260 22 6 0.1514 -5.0663 -2.9449 23 6 -0.8285 -5.8090 -3.8570 24 8 -0.1640 -6.9265 -4.4528 25 6 0.9876 -6.5686 -5.2216 26 6 1.9860 -5.8337 -4.3233 27 6 1.5569 -2.6869 -2.2962 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.1859 1.1177 -0.4343 32 1 1.6502 2.0043 -0.5894 33 1 3.9670 4.4805 0.8473 34 1 3.4646 -0.7281 -3.0943 35 1 4.4200 -0.9208 -1.6018 36 1 5.2779 -2.3230 -3.5123 37 1 4.7954 -3.2893 -2.0971 38 1 3.0604 -2.7617 -4.5531 39 1 3.9343 -4.2748 -4.2152 40 1 0.4617 -5.7233 -2.1323 41 1 -0.3338 -4.1814 -2.5332 42 1 -1.1801 -5.1355 -4.6386 43 1 -1.6770 -6.1608 -3.2700 44 1 0.6888 -5.9172 -6.0429 45 1 1.4526 -7.4697 -5.6216 46 1 2.8398 -5.5088 -4.9178 47 1 2.3255 -6.5029 -3.5328 48 1 0.7907 -3.0273 -1.5995 49 1 1.0959 -2.1030 -3.0928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601424486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:53 Heat of formation + Delta-G solvation = -105.260486 kcal Electronic energy + Delta-G solvation = -30797.961845 eV Core-core repulsion = 26694.161485 eV Total energy + Delta-G solvation = -4103.800360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.20145 -38.32112 -36.73839 -35.50707 -35.47082 -35.18619 -32.46612 -32.38390 -31.34258 -30.40636 -27.80257 -26.63237 -25.35776 -25.01351 -23.44317 -22.64261 -22.26748 -20.78002 -20.23645 -18.57716 -17.58325 -16.79094 -16.64346 -16.38467 -16.31740 -15.89160 -15.45669 -15.21445 -15.11805 -14.63714 -14.54560 -14.33830 -14.07964 -13.72579 -13.52602 -13.35030 -13.21204 -12.83177 -12.57027 -12.41046 -12.12813 -12.07843 -11.70421 -11.65900 -11.61542 -11.55699 -11.45717 -11.21613 -11.12500 -11.05038 -10.76159 -10.72905 -10.71208 -10.54543 -10.38345 -10.03201 -9.93711 -9.76528 -8.91063 -8.66604 -8.46010 -8.07202 -6.08197 -4.11943 1.11876 3.26522 3.29979 3.37551 3.43139 3.52982 3.62602 4.05244 4.41817 4.43598 4.60519 4.65939 4.72401 4.84776 4.87418 4.94505 4.95103 5.03005 5.14214 5.19445 5.23007 5.26251 5.31205 5.34976 5.42479 5.50199 5.51422 5.59491 5.67273 5.73919 5.77251 5.80890 5.89115 5.93340 6.03131 6.19986 6.21518 6.33175 6.46316 6.60513 6.66809 6.82461 6.85486 7.18969 7.37006 7.57895 7.89489 8.18614 8.90616 9.53391 11.00418 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.002881 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.957879 B = 9716.717255 C =10285.300672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.997 5.997 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.283 1.283 12 S 2.780 3.220 13 O -0.960 6.960 14 O -0.996 6.996 15 N -1.010 6.010 16 C 0.117 3.883 17 C -0.130 4.130 18 C -0.109 4.109 19 C 0.073 3.927 20 H 0.047 0.953 21 N -0.530 5.530 22 C 0.009 3.991 23 C 0.065 3.935 24 O -0.388 6.388 25 C 0.065 3.935 26 C 0.015 3.985 27 C 0.127 3.873 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.088 0.912 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 -16.527 -14.290 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.840 5.840 3 C 0.136 3.864 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.209 1.209 12 S 2.789 3.211 13 O -0.944 6.944 14 O -0.980 6.980 15 N -0.849 5.849 16 C -0.008 4.008 17 C -0.170 4.170 18 C -0.146 4.146 19 C -0.036 4.036 20 H 0.065 0.935 21 N -0.256 5.256 22 C -0.119 4.119 23 C -0.012 4.012 24 O -0.306 6.306 25 C -0.012 4.012 26 C -0.114 4.114 27 C 0.001 3.999 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.061 0.939 48 H 0.106 0.894 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.315 -16.709 -13.911 22.166 hybrid contribution 0.438 0.482 1.271 1.428 sum -3.877 -16.227 -12.640 20.931 Atomic orbital electron populations 1.21200 0.80062 1.01041 1.01432 1.57706 1.14285 1.23440 1.88518 1.19074 0.90953 0.78701 0.97715 1.21522 1.35935 1.06314 0.92946 0.92193 1.24928 0.95098 0.96492 0.97505 1.69924 1.37419 1.15313 1.30853 0.86461 0.78009 0.78517 0.84596 1.19648 1.20775 1.20929 1.02056 0.73512 0.72793 0.72757 1.93615 1.40467 1.84914 1.75361 1.93514 1.67480 1.60515 1.76518 1.58460 1.29487 1.64373 1.32563 1.21441 0.85744 0.96065 0.97544 1.21881 0.97989 0.97514 0.99609 1.21570 0.94915 1.00083 0.98075 1.21894 0.92765 0.94632 0.94339 0.93483 1.62221 1.07676 1.21493 1.34195 1.22905 0.92685 1.00515 0.95809 1.22679 0.94292 0.88208 0.96002 1.87980 1.42271 1.32291 1.68092 1.22654 0.85929 0.99498 0.93137 1.22843 0.98010 0.91655 0.98847 1.21254 0.90547 0.90971 0.97155 0.93125 0.91421 0.93209 0.94541 0.94708 0.92732 0.91282 0.88397 0.90339 0.91569 0.90695 0.91818 0.93538 0.88927 0.92135 0.88360 0.92225 0.88602 0.89150 0.93923 0.89395 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.88 10.33 59.85 0.62 2.50 16 2 N -1.00 -20.73 3.23 -123.04 -0.40 -21.13 16 3 C 0.26 6.40 5.12 -5.19 -0.03 6.38 16 4 C -0.53 -14.84 9.38 -34.44 -0.32 -15.17 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 S 2.78 55.56 6.05 -107.50 -0.65 54.91 16 13 O -0.96 -22.81 15.70 -57.17 -0.90 -23.71 16 14 O -1.00 -20.67 15.79 -57.17 -0.90 -21.57 16 15 N -1.01 -15.45 3.35 -113.77 -0.38 -15.83 16 16 C 0.12 1.61 6.48 -3.71 -0.02 1.59 16 17 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 18 C -0.11 -1.06 4.98 -26.69 -0.13 -1.19 16 19 C 0.07 0.82 2.08 -67.81 -0.14 0.68 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 N -0.53 -5.26 4.60 -226.45 -1.04 -6.31 16 22 C 0.01 0.09 5.25 -3.72 -0.02 0.07 16 23 C 0.07 0.56 7.01 37.21 0.26 0.82 16 24 O -0.39 -3.93 10.83 -35.23 -0.38 -4.31 16 25 C 0.06 0.52 7.01 37.21 0.26 0.78 16 26 C 0.01 0.13 5.34 -3.71 -0.02 0.11 16 27 C 0.13 1.61 5.19 -3.93 -0.02 1.59 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 30 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 31 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 32 H 0.03 0.88 7.96 -51.93 -0.41 0.46 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.54 6.92 -51.93 -0.36 1.18 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.53 6.28 -51.93 -0.33 0.21 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.87 6.25 -51.93 -0.32 0.54 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.66 6.16 -51.93 -0.32 0.34 16 47 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 1.16 5.41 -51.93 -0.28 0.87 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -33.68 387.68 -11.20 -44.88 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.28 Total: -2.63 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.17 Total: -1.78 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.08 Total: -68.45 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -2.18 Total: -49.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -0.65 Total: 54.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.68 -11.20 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.384 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds