Wall clock time and date at job start Wed Apr 1 2020 05:59:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46501 * 120.00098 * 2 1
4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1
5 5 H 1.07995 * 120.00302 * 0.02562 * 4 3 2
6 6 C 1.37877 * 119.99909 * 179.97438 * 4 3 2
7 7 N 1.31516 * 120.00052 * 0.02562 * 6 4 3
8 8 Si 1.86796 * 120.00263 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.46960 * 0.02562 * 8 6 4
10 10 H 1.48497 * 109.47261 * 120.00377 * 8 6 4
11 11 H 1.48500 * 109.47416 * 240.00817 * 8 6 4
12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3
13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1
14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1
15 15 N 1.65600 * 107.21815 * 89.99936 * 12 2 1
16 16 C 1.46924 * 120.63297 * 90.00135 * 15 12 2
17 17 C 1.53190 * 108.77593 * 126.36566 * 16 15 12
18 18 C 1.53043 * 109.31131 * 54.63996 * 17 16 15
19 19 C 1.53041 * 109.53387 * 298.62854 * 18 17 16
20 20 H 1.08999 * 109.50368 * 301.41705 * 19 18 17
21 21 N 1.46906 * 109.49907 * 181.35310 * 19 18 17
22 22 C 1.47006 * 111.00209 * 183.63959 * 21 19 18
23 23 C 1.53097 * 109.25669 * 177.60789 * 22 21 19
24 24 O 1.43015 * 109.26015 * 56.84350 * 23 22 21
25 25 C 1.43011 * 113.74091 * 301.33098 * 24 23 22
26 26 C 1.47019 * 110.99759 * 59.99724 * 21 19 18
27 27 C 1.46933 * 120.62824 * 269.71746 * 15 12 2
28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3
29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3
30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3
31 31 H 1.09001 * 109.47135 * 205.00098 * 3 2 1
32 32 H 1.09001 * 109.46893 * 325.00392 * 3 2 1
33 33 H 0.97000 * 119.99965 * 179.97438 * 7 6 4
34 34 H 1.08998 * 109.58392 * 246.15496 * 16 15 12
35 35 H 1.08994 * 109.58378 * 6.57796 * 16 15 12
36 36 H 1.09002 * 109.49598 * 174.58330 * 17 16 15
37 37 H 1.08997 * 109.49957 * 294.65394 * 17 16 15
38 38 H 1.08998 * 109.46215 * 58.65359 * 18 17 16
39 39 H 1.09004 * 109.45926 * 178.61376 * 18 17 16
40 40 H 1.09002 * 109.50381 * 297.54011 * 22 21 19
41 41 H 1.09001 * 109.50863 * 57.67298 * 22 21 19
42 42 H 1.09003 * 109.50601 * 296.90909 * 23 22 21
43 43 H 1.09005 * 109.50805 * 176.77997 * 23 22 21
44 44 H 1.08998 * 109.50641 * 298.73557 * 25 24 23
45 45 H 1.09002 * 109.50722 * 178.60501 * 25 24 23
46 46 H 1.08993 * 109.50788 * 302.33247 * 26 21 19
47 47 H 1.08999 * 109.50224 * 62.46550 * 26 21 19
48 48 H 1.09001 * 109.58560 * 353.42094 * 27 15 12
49 49 H 1.08996 * 109.58285 * 113.84684 * 27 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.3415 1.7656 1.4154
5 1 1.9290 1.1934 2.2332
6 6 3.0007 2.9503 1.6665
7 7 3.5035 3.6468 0.6707
8 14 3.1798 3.5659 3.4209
9 1 2.5322 2.6060 4.3508
10 1 4.6208 3.6861 3.7587
11 1 2.5290 4.8946 3.5482
12 16 2.2930 -1.4342 -0.0006
13 8 3.5760 -1.1571 0.5439
14 8 1.4113 -2.4067 0.5434
15 7 2.5381 -1.8580 -1.5826
16 6 3.7437 -1.4176 -2.2975
17 6 4.4361 -2.6445 -2.8991
18 6 3.4375 -3.4148 -3.7662
19 6 2.2711 -3.8949 -2.8995
20 1 2.6503 -4.5282 -2.0974
21 7 1.3293 -4.6618 -3.7260
22 6 0.1514 -5.0663 -2.9449
23 6 -0.8285 -5.8090 -3.8570
24 8 -0.1640 -6.9265 -4.4528
25 6 0.9876 -6.5686 -5.2216
26 6 1.9860 -5.8337 -4.3233
27 6 1.5569 -2.6869 -2.2962
28 1 -0.3633 0.0000 1.0277
29 1 -0.3633 0.8900 -0.5138
30 1 -0.3634 -0.8900 -0.5139
31 1 3.1859 1.1177 -0.4343
32 1 1.6502 2.0043 -0.5894
33 1 3.9670 4.4805 0.8473
34 1 3.4646 -0.7281 -3.0943
35 1 4.4200 -0.9208 -1.6018
36 1 5.2779 -2.3230 -3.5123
37 1 4.7954 -3.2893 -2.0971
38 1 3.0604 -2.7617 -4.5531
39 1 3.9343 -4.2748 -4.2152
40 1 0.4617 -5.7233 -2.1323
41 1 -0.3338 -4.1814 -2.5332
42 1 -1.1801 -5.1355 -4.6386
43 1 -1.6770 -6.1608 -3.2700
44 1 0.6888 -5.9172 -6.0429
45 1 1.4526 -7.4697 -5.6216
46 1 2.8398 -5.5088 -4.9178
47 1 2.3255 -6.5029 -3.5328
48 1 0.7907 -3.0273 -1.5995
49 1 1.0959 -2.1030 -3.0928
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601424486.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:59:53
Heat of formation + Delta-G solvation = -105.260486 kcal
Electronic energy + Delta-G solvation = -30797.961845 eV
Core-core repulsion = 26694.161485 eV
Total energy + Delta-G solvation = -4103.800360 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.20145 -38.32112 -36.73839 -35.50707 -35.47082 -35.18619 -32.46612 -32.38390
-31.34258 -30.40636 -27.80257 -26.63237 -25.35776 -25.01351 -23.44317 -22.64261
-22.26748 -20.78002 -20.23645 -18.57716 -17.58325 -16.79094 -16.64346 -16.38467
-16.31740 -15.89160 -15.45669 -15.21445 -15.11805 -14.63714 -14.54560 -14.33830
-14.07964 -13.72579 -13.52602 -13.35030 -13.21204 -12.83177 -12.57027 -12.41046
-12.12813 -12.07843 -11.70421 -11.65900 -11.61542 -11.55699 -11.45717 -11.21613
-11.12500 -11.05038 -10.76159 -10.72905 -10.71208 -10.54543 -10.38345 -10.03201
-9.93711 -9.76528 -8.91063 -8.66604 -8.46010 -8.07202 -6.08197 -4.11943
1.11876 3.26522 3.29979 3.37551 3.43139 3.52982 3.62602 4.05244
4.41817 4.43598 4.60519 4.65939 4.72401 4.84776 4.87418 4.94505
4.95103 5.03005 5.14214 5.19445 5.23007 5.26251 5.31205 5.34976
5.42479 5.50199 5.51422 5.59491 5.67273 5.73919 5.77251 5.80890
5.89115 5.93340 6.03131 6.19986 6.21518 6.33175 6.46316 6.60513
6.66809 6.82461 6.85486 7.18969 7.37006 7.57895 7.89489 8.18614
8.90616 9.53391 11.00418
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023505 B = 0.002881 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1190.957879 B = 9716.717255 C =10285.300672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.109 3.891
2 N -0.997 5.997
3 C 0.258 3.742
4 C -0.528 4.528
5 H 0.060 0.940
6 C 0.062 3.938
7 N -0.896 5.896
8 Si 0.897 3.103
9 H -0.272 1.272
10 H -0.282 1.282
11 H -0.283 1.283
12 S 2.780 3.220
13 O -0.960 6.960
14 O -0.996 6.996
15 N -1.010 6.010
16 C 0.117 3.883
17 C -0.130 4.130
18 C -0.109 4.109
19 C 0.073 3.927
20 H 0.047 0.953
21 N -0.530 5.530
22 C 0.009 3.991
23 C 0.065 3.935
24 O -0.388 6.388
25 C 0.065 3.935
26 C 0.015 3.985
27 C 0.127 3.873
28 H 0.050 0.950
29 H 0.067 0.933
30 H 0.049 0.951
31 H 0.037 0.963
32 H 0.035 0.965
33 H 0.263 0.737
34 H 0.069 0.931
35 H 0.098 0.902
36 H 0.078 0.922
37 H 0.066 0.934
38 H 0.074 0.926
39 H 0.063 0.937
40 H 0.046 0.954
41 H 0.093 0.907
42 H 0.060 0.940
43 H 0.098 0.902
44 H 0.059 0.941
45 H 0.096 0.904
46 H 0.090 0.910
47 H 0.042 0.958
48 H 0.088 0.912
49 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.460 -16.527 -14.290 22.299
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 N -0.840 5.840
3 C 0.136 3.864
4 C -0.567 4.567
5 H 0.078 0.922
6 C -0.140 4.140
7 N -0.535 5.535
8 Si 0.724 3.276
9 H -0.196 1.196
10 H -0.208 1.208
11 H -0.209 1.209
12 S 2.789 3.211
13 O -0.944 6.944
14 O -0.980 6.980
15 N -0.849 5.849
16 C -0.008 4.008
17 C -0.170 4.170
18 C -0.146 4.146
19 C -0.036 4.036
20 H 0.065 0.935
21 N -0.256 5.256
22 C -0.119 4.119
23 C -0.012 4.012
24 O -0.306 6.306
25 C -0.012 4.012
26 C -0.114 4.114
27 C 0.001 3.999
28 H 0.069 0.931
29 H 0.086 0.914
30 H 0.068 0.932
31 H 0.055 0.945
32 H 0.053 0.947
33 H 0.073 0.927
34 H 0.087 0.913
35 H 0.116 0.884
36 H 0.097 0.903
37 H 0.084 0.916
38 H 0.093 0.907
39 H 0.082 0.918
40 H 0.065 0.935
41 H 0.111 0.889
42 H 0.079 0.921
43 H 0.116 0.884
44 H 0.078 0.922
45 H 0.114 0.886
46 H 0.109 0.891
47 H 0.061 0.939
48 H 0.106 0.894
49 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -4.315 -16.709 -13.911 22.166
hybrid contribution 0.438 0.482 1.271 1.428
sum -3.877 -16.227 -12.640 20.931
Atomic orbital electron populations
1.21200 0.80062 1.01041 1.01432 1.57706 1.14285 1.23440 1.88518
1.19074 0.90953 0.78701 0.97715 1.21522 1.35935 1.06314 0.92946
0.92193 1.24928 0.95098 0.96492 0.97505 1.69924 1.37419 1.15313
1.30853 0.86461 0.78009 0.78517 0.84596 1.19648 1.20775 1.20929
1.02056 0.73512 0.72793 0.72757 1.93615 1.40467 1.84914 1.75361
1.93514 1.67480 1.60515 1.76518 1.58460 1.29487 1.64373 1.32563
1.21441 0.85744 0.96065 0.97544 1.21881 0.97989 0.97514 0.99609
1.21570 0.94915 1.00083 0.98075 1.21894 0.92765 0.94632 0.94339
0.93483 1.62221 1.07676 1.21493 1.34195 1.22905 0.92685 1.00515
0.95809 1.22679 0.94292 0.88208 0.96002 1.87980 1.42271 1.32291
1.68092 1.22654 0.85929 0.99498 0.93137 1.22843 0.98010 0.91655
0.98847 1.21254 0.90547 0.90971 0.97155 0.93125 0.91421 0.93209
0.94541 0.94708 0.92732 0.91282 0.88397 0.90339 0.91569 0.90695
0.91818 0.93538 0.88927 0.92135 0.88360 0.92225 0.88602 0.89150
0.93923 0.89395 0.90663
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.88 10.33 59.85 0.62 2.50 16
2 N -1.00 -20.73 3.23 -123.04 -0.40 -21.13 16
3 C 0.26 6.40 5.12 -5.19 -0.03 6.38 16
4 C -0.53 -14.84 9.38 -34.44 -0.32 -15.17 16
5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16
6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
7 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16
8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16
9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16
10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
12 S 2.78 55.56 6.05 -107.50 -0.65 54.91 16
13 O -0.96 -22.81 15.70 -57.17 -0.90 -23.71 16
14 O -1.00 -20.67 15.79 -57.17 -0.90 -21.57 16
15 N -1.01 -15.45 3.35 -113.77 -0.38 -15.83 16
16 C 0.12 1.61 6.48 -3.71 -0.02 1.59 16
17 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16
18 C -0.11 -1.06 4.98 -26.69 -0.13 -1.19 16
19 C 0.07 0.82 2.08 -67.81 -0.14 0.68 16
20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
21 N -0.53 -5.26 4.60 -226.45 -1.04 -6.31 16
22 C 0.01 0.09 5.25 -3.72 -0.02 0.07 16
23 C 0.07 0.56 7.01 37.21 0.26 0.82 16
24 O -0.39 -3.93 10.83 -35.23 -0.38 -4.31 16
25 C 0.06 0.52 7.01 37.21 0.26 0.78 16
26 C 0.01 0.13 5.34 -3.71 -0.02 0.11 16
27 C 0.13 1.61 5.19 -3.93 -0.02 1.59 16
28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
29 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16
30 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16
31 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16
32 H 0.03 0.88 7.96 -51.93 -0.41 0.46 16
33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.10 1.54 6.92 -51.93 -0.36 1.18 16
36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.06 0.53 6.28 -51.93 -0.33 0.21 16
40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
41 H 0.09 0.87 6.25 -51.93 -0.32 0.54 16
42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
46 H 0.09 0.66 6.16 -51.93 -0.32 0.34 16
47 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
48 H 0.09 1.16 5.41 -51.93 -0.28 0.87 16
49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
LS Contribution 387.68 15.07 5.84 5.84
Total: -1.00 -33.68 387.68 -11.20 -44.88
By element:
Atomic # 1 Polarization: 5.65 SS G_CDS: -8.28 Total: -2.63 kcal
Atomic # 6 Polarization: -1.96 SS G_CDS: 0.17 Total: -1.78 kcal
Atomic # 7 Polarization: -67.37 SS G_CDS: -1.08 Total: -68.45 kcal
Atomic # 8 Polarization: -47.41 SS G_CDS: -2.18 Total: -49.60 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Atomic # 16 Polarization: 55.56 SS G_CDS: -0.65 Total: 54.91 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.68 -11.20 -44.88 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601424486.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.384 kcal
(2) G-P(sol) polarization free energy of solvation -33.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds