Wall clock time and date at job start Wed Apr 1 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 H 1.07995 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00052 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00263 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46960 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47261 * 120.00377 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00817 * 8 6 4 12 12 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40401 * 203.53818 * 12 2 1 14 14 O 1.42103 * 106.40122 * 336.45794 * 12 2 1 15 15 N 1.65600 * 107.21815 * 89.99936 * 12 2 1 16 16 C 1.46924 * 120.63297 * 90.00135 * 15 12 2 17 17 C 1.53190 * 108.77593 * 126.36566 * 16 15 12 18 18 C 1.53043 * 109.31131 * 54.63996 * 17 16 15 19 19 C 1.53041 * 109.53387 * 298.62854 * 18 17 16 20 20 H 1.08999 * 109.50368 * 301.41705 * 19 18 17 21 21 N 1.46906 * 109.49907 * 181.35310 * 19 18 17 22 22 C 1.47006 * 111.00209 * 183.63959 * 21 19 18 23 23 C 1.53097 * 109.25669 * 177.60789 * 22 21 19 24 24 O 1.43015 * 109.26015 * 56.84350 * 23 22 21 25 25 C 1.43011 * 113.74091 * 301.33098 * 24 23 22 26 26 C 1.47019 * 110.99759 * 59.99724 * 21 19 18 27 27 C 1.46933 * 120.62824 * 269.71746 * 15 12 2 28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 31 31 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 32 32 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 33 33 H 0.97000 * 119.99965 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.58392 * 246.15496 * 16 15 12 35 35 H 1.08994 * 109.58378 * 6.57796 * 16 15 12 36 36 H 1.09002 * 109.49598 * 174.58330 * 17 16 15 37 37 H 1.08997 * 109.49957 * 294.65394 * 17 16 15 38 38 H 1.08998 * 109.46215 * 58.65359 * 18 17 16 39 39 H 1.09004 * 109.45926 * 178.61376 * 18 17 16 40 40 H 1.09002 * 109.50381 * 297.54011 * 22 21 19 41 41 H 1.09001 * 109.50863 * 57.67298 * 22 21 19 42 42 H 1.09003 * 109.50601 * 296.90909 * 23 22 21 43 43 H 1.09005 * 109.50805 * 176.77997 * 23 22 21 44 44 H 1.08998 * 109.50641 * 298.73557 * 25 24 23 45 45 H 1.09002 * 109.50722 * 178.60501 * 25 24 23 46 46 H 1.08993 * 109.50788 * 302.33247 * 26 21 19 47 47 H 1.08999 * 109.50224 * 62.46550 * 26 21 19 48 48 H 1.09001 * 109.58560 * 353.42094 * 27 15 12 49 49 H 1.08996 * 109.58285 * 113.84684 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.5035 3.6468 0.6707 8 14 3.1798 3.5659 3.4209 9 1 2.5322 2.6060 4.3508 10 1 4.6208 3.6861 3.7587 11 1 2.5290 4.8946 3.5482 12 16 2.2930 -1.4342 -0.0006 13 8 3.5760 -1.1571 0.5439 14 8 1.4113 -2.4067 0.5434 15 7 2.5381 -1.8580 -1.5826 16 6 3.7437 -1.4176 -2.2975 17 6 4.4361 -2.6445 -2.8991 18 6 3.4375 -3.4148 -3.7662 19 6 2.2711 -3.8949 -2.8995 20 1 2.6503 -4.5282 -2.0974 21 7 1.3293 -4.6618 -3.7260 22 6 0.1514 -5.0663 -2.9449 23 6 -0.8285 -5.8090 -3.8570 24 8 -0.1640 -6.9265 -4.4528 25 6 0.9876 -6.5686 -5.2216 26 6 1.9860 -5.8337 -4.3233 27 6 1.5569 -2.6869 -2.2962 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.1859 1.1177 -0.4343 32 1 1.6502 2.0043 -0.5894 33 1 3.9670 4.4805 0.8473 34 1 3.4646 -0.7281 -3.0943 35 1 4.4200 -0.9208 -1.6018 36 1 5.2779 -2.3230 -3.5123 37 1 4.7954 -3.2893 -2.0971 38 1 3.0604 -2.7617 -4.5531 39 1 3.9343 -4.2748 -4.2152 40 1 0.4617 -5.7233 -2.1323 41 1 -0.3338 -4.1814 -2.5332 42 1 -1.1801 -5.1355 -4.6386 43 1 -1.6770 -6.1608 -3.2700 44 1 0.6888 -5.9172 -6.0429 45 1 1.4526 -7.4697 -5.6216 46 1 2.8398 -5.5088 -4.9178 47 1 2.3255 -6.5029 -3.5328 48 1 0.7907 -3.0273 -1.5995 49 1 1.0959 -2.1030 -3.0928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601424486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:52 Heat of formation + Delta-G solvation = -131.234236 kcal Electronic energy + Delta-G solvation = -30799.088151 eV Core-core repulsion = 26694.161485 eV Total energy + Delta-G solvation = -4104.926667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.99212 -39.21623 -38.42162 -37.24455 -36.91268 -36.34648 -34.52960 -33.35038 -32.07168 -31.32996 -29.69700 -27.42577 -26.83752 -26.15639 -24.42769 -24.11786 -23.51535 -21.59122 -21.14859 -19.93143 -19.13251 -18.43142 -18.33220 -17.47970 -17.37171 -17.03421 -16.63778 -16.22100 -16.05992 -15.95470 -15.55708 -15.34495 -15.27718 -15.00921 -14.85809 -14.59443 -14.42011 -14.09944 -14.00204 -13.79841 -13.38304 -13.36431 -13.14478 -13.07779 -13.05123 -12.99495 -12.61706 -12.50855 -12.49573 -12.40118 -12.30509 -12.01165 -11.91437 -11.77106 -11.74937 -11.41959 -11.33789 -10.63796 -10.61668 -10.09092 -9.80293 -9.47240 -8.22505 -6.34126 -0.44523 1.36690 1.39188 1.50700 1.94199 2.36676 2.46247 2.70271 2.98469 3.08229 3.30617 3.55420 3.79311 3.86402 3.94527 4.00873 4.04325 4.08983 4.19806 4.23582 4.29620 4.35846 4.37423 4.45042 4.62514 4.64724 4.69338 4.75053 4.78278 4.80288 4.83530 4.86268 4.92898 4.97857 5.01378 5.04805 5.10228 5.15425 5.19930 5.35751 5.40323 5.53016 5.68164 5.88274 5.91869 5.95890 6.08673 6.20671 6.73552 7.34677 8.85165 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023505 B = 0.002881 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.957879 B = 9716.717255 C =10285.300672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.004 6.004 3 C 0.273 3.727 4 C -0.551 4.551 5 H 0.047 0.953 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.268 1.268 12 S 2.790 3.210 13 O -1.005 7.005 14 O -1.008 7.008 15 N -1.002 6.002 16 C 0.110 3.890 17 C -0.125 4.125 18 C -0.102 4.102 19 C 0.076 3.924 20 H 0.028 0.972 21 N -0.526 5.526 22 C 0.006 3.994 23 C 0.067 3.933 24 O -0.408 6.408 25 C 0.063 3.937 26 C 0.014 3.986 27 C 0.123 3.877 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.018 0.982 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.031 0.969 48 H 0.082 0.918 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -17.132 -15.969 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.846 5.846 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.193 1.193 12 S 2.800 3.200 13 O -0.989 6.989 14 O -0.992 6.992 15 N -0.843 5.843 16 C -0.015 4.015 17 C -0.165 4.165 18 C -0.139 4.139 19 C -0.034 4.034 20 H 0.046 0.954 21 N -0.252 5.252 22 C -0.122 4.122 23 C -0.010 4.010 24 O -0.327 6.327 25 C -0.013 4.013 26 C -0.114 4.114 27 C -0.002 4.002 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.086 0.914 45 H 0.132 0.868 46 H 0.126 0.874 47 H 0.049 0.951 48 H 0.100 0.900 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.826 -17.324 -15.589 23.800 hybrid contribution 0.568 0.599 1.730 1.917 sum -4.258 -16.726 -13.858 22.134 Atomic orbital electron populations 1.21447 0.78025 1.03315 1.01736 1.57623 1.15728 1.22131 1.89098 1.18646 0.90481 0.80101 0.95852 1.21834 1.36279 1.06711 0.94168 0.93435 1.25708 0.94744 0.96701 1.01404 1.69998 1.37773 1.15729 1.32598 0.85565 0.78115 0.78453 0.79938 1.19700 1.20347 1.19283 1.01456 0.72396 0.72425 0.73681 1.93551 1.42601 1.85477 1.77246 1.93488 1.67550 1.60516 1.77614 1.58062 1.30630 1.64424 1.31207 1.21643 0.84857 0.97841 0.97154 1.21879 0.98840 0.96058 0.99726 1.21546 0.93966 1.00808 0.97598 1.21825 0.93408 0.93797 0.94391 0.95433 1.62273 1.07398 1.22078 1.33443 1.22958 0.93067 1.00449 0.95771 1.22743 0.94134 0.88002 0.96093 1.87957 1.43062 1.33204 1.68457 1.22810 0.85214 1.00461 0.92834 1.22939 0.98749 0.90983 0.98731 1.21478 0.89984 0.91519 0.97246 0.93862 0.90066 0.90042 0.96384 0.95198 0.92276 0.89462 0.91118 0.87799 0.92741 0.89620 0.89757 0.95203 0.88703 0.91266 0.87225 0.91448 0.86822 0.87396 0.95064 0.90009 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.38 10.33 127.77 1.32 4.70 16 2 N -1.00 -42.25 3.23 -543.20 -1.75 -44.00 16 3 C 0.27 13.88 5.12 85.63 0.44 14.32 16 4 C -0.55 -31.60 9.38 25.60 0.24 -31.36 16 5 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 6 C 0.01 0.81 5.46 84.65 0.46 1.27 16 7 N -0.92 -53.72 13.29 21.45 0.28 -53.43 16 8 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 S 2.79 113.68 6.05 -56.49 -0.34 113.34 16 13 O -1.00 -49.71 15.70 -128.00 -2.01 -51.72 16 14 O -1.01 -42.18 15.79 -128.00 -2.02 -44.20 16 15 N -1.00 -30.31 3.35 -513.85 -1.72 -32.03 16 16 C 0.11 2.96 6.48 86.36 0.56 3.52 16 17 C -0.13 -2.53 6.08 30.67 0.19 -2.34 16 18 C -0.10 -1.70 4.98 30.62 0.15 -1.55 16 19 C 0.08 1.58 2.08 44.85 0.09 1.67 16 20 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 21 N -0.53 -9.40 4.60 -870.36 -4.00 -13.40 16 22 C 0.01 0.11 5.25 86.32 0.45 0.56 16 23 C 0.07 1.04 7.01 72.01 0.50 1.55 16 24 O -0.41 -7.55 10.83 -148.98 -1.61 -9.16 16 25 C 0.06 0.85 7.01 72.02 0.50 1.36 16 26 C 0.01 0.21 5.34 86.31 0.46 0.67 16 27 C 0.12 2.96 5.19 86.22 0.45 3.40 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.49 7.94 -2.38 -0.02 2.48 16 30 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 31 H 0.02 0.98 7.61 -2.39 -0.02 0.96 16 32 H 0.03 1.53 7.96 -2.39 -0.02 1.51 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.31 6.92 -2.39 -0.02 2.30 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.11 6.28 -2.39 -0.01 1.09 16 40 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 1.66 6.25 -2.39 -0.01 1.65 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.11 1.21 6.16 -2.39 -0.01 1.20 16 47 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 2.07 5.41 -2.39 -0.01 2.06 16 49 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.27 387.68 -4.40 -77.67 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.93 Total: 12.24 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.82 Total: -2.23 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -7.19 Total: -142.87 kcal Atomic # 8 Polarization: -99.44 SS G_CDS: -5.64 Total: -105.08 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 113.68 SS G_CDS: -0.34 Total: 113.34 kcal Total: -73.27 -4.40 -77.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.565 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds