Wall clock time and date at job start Wed Apr 1 2020 04:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47573 * 2 1 4 4 C 1.36744 * 127.13036 * 265.06069 * 3 2 1 5 5 C 1.50695 * 126.35110 * 0.03483 * 4 3 2 6 6 C 1.52994 * 109.47036 * 270.25063 * 5 4 3 7 7 F 1.39903 * 109.47285 * 60.00085 * 6 5 4 8 8 F 1.39899 * 109.47343 * 180.02562 * 6 5 4 9 9 F 1.39905 * 109.47357 * 299.99992 * 6 5 4 10 10 N 1.30299 * 107.29860 * 180.22408 * 4 3 2 11 11 N 1.28531 * 110.05485 * 359.77747 * 10 4 3 12 12 C 1.31211 * 109.86178 * 359.97438 * 11 10 4 13 13 N 1.38578 * 126.47448 * 179.97438 * 12 11 10 14 14 C 1.46959 * 111.00081 * 295.93188 * 13 12 11 15 15 C 1.53054 * 109.36499 * 183.19080 * 14 13 12 16 16 N 1.46955 * 109.35851 * 301.59586 * 15 14 13 17 17 C 1.46906 * 110.99881 * 183.19140 * 16 15 14 18 18 C 1.50700 * 109.47357 * 170.00107 * 17 16 15 19 19 H 1.07995 * 119.99956 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99741 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00265 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99720 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46979 * 120.00094 * 22 20 18 25 25 H 1.48507 * 109.47230 * 239.99887 * 22 20 18 26 26 C 1.46954 * 110.88194 * 59.32706 * 16 15 14 27 27 C 1.46956 * 110.99977 * 59.72970 * 13 12 11 28 28 H 1.09001 * 109.47137 * 296.83505 * 1 2 3 29 29 H 1.08997 * 109.46706 * 56.82719 * 1 2 3 30 30 H 1.08992 * 109.47223 * 176.83101 * 1 2 3 31 31 H 1.08999 * 109.47243 * 239.99531 * 2 1 3 32 32 H 1.09004 * 109.46790 * 119.99707 * 2 1 3 33 33 H 1.09004 * 109.46901 * 30.25209 * 5 4 3 34 34 H 1.09004 * 109.47074 * 150.25262 * 5 4 3 35 35 H 1.08996 * 109.49209 * 63.21709 * 14 13 12 36 36 H 1.09007 * 109.48621 * 303.15248 * 14 13 12 37 37 H 1.09007 * 109.48721 * 181.63347 * 15 14 13 38 38 H 1.08996 * 109.49033 * 61.56338 * 15 14 13 39 39 H 1.09004 * 109.46883 * 290.00298 * 17 16 15 40 40 H 1.09000 * 109.46848 * 49.99853 * 17 16 15 41 41 H 0.97001 * 119.99969 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.49082 * 60.64012 * 26 16 15 43 43 H 1.09007 * 109.48729 * 180.71084 * 26 16 15 44 44 H 1.08996 * 109.48963 * 296.77821 * 27 13 12 45 45 H 1.08995 * 109.48635 * 56.82432 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3821 2.1281 -1.0862 5 6 2.3559 1.6829 -2.5256 6 6 3.6995 1.0468 -2.8873 7 9 3.9294 -0.0588 -2.0614 8 9 3.6754 0.6340 -4.2238 9 9 4.7226 1.9839 -2.7076 10 7 2.7595 3.2947 -0.6453 11 7 2.6553 3.3369 0.6350 12 6 2.2017 2.1902 1.0834 13 7 1.9604 1.8608 2.4077 14 6 3.2062 1.8665 3.1872 15 6 2.9097 1.4216 4.6212 16 7 1.9155 2.3256 5.2160 17 6 1.6597 1.9765 6.6199 18 6 0.8326 3.0590 7.2642 19 1 0.5270 3.9200 6.6883 20 6 0.4651 2.9496 8.5885 21 7 0.8367 1.9009 9.2896 22 14 -0.5596 4.2918 9.3873 23 1 -0.8441 5.3562 8.3916 24 1 -1.8387 3.7148 9.8735 25 1 0.1888 4.8711 10.5317 26 6 0.6696 2.3199 4.4366 27 6 0.9662 2.7648 3.0026 28 1 -0.3633 0.4639 0.9170 29 1 -0.3633 0.5623 -0.8602 30 1 -0.3633 -1.0260 -0.0568 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5587 0.9527 -2.6656 34 1 2.1768 2.5443 -3.1691 35 1 3.6240 2.8732 3.1978 36 1 3.9218 1.1802 2.7341 37 1 3.8273 1.4529 5.2088 38 1 2.5174 0.4047 4.6127 39 1 1.1201 1.0305 6.6665 40 1 2.6079 1.8803 7.1489 41 1 0.5784 1.8241 10.2215 42 1 0.2520 1.3132 4.4260 43 1 -0.0459 3.0062 4.8897 44 1 1.3585 3.7817 3.0111 45 1 0.0489 2.7338 2.4148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601866484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:37 Heat of formation + Delta-G solvation = -56.370186 kcal Electronic energy + Delta-G solvation = -31674.570476 eV Core-core repulsion = 26927.882218 eV Total energy + Delta-G solvation = -4746.688258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.54301 -48.08842 -47.96491 -43.26421 -38.92987 -36.07935 -35.40448 -33.43416 -32.44811 -30.86628 -30.66053 -29.20238 -27.51361 -25.26865 -24.53908 -24.19133 -23.26557 -22.14492 -21.33205 -20.92553 -19.31860 -18.94713 -18.91413 -18.23967 -17.29399 -16.56946 -16.44504 -16.17940 -15.25857 -15.04377 -14.81675 -14.78441 -14.55344 -14.44092 -14.34436 -14.21028 -14.13854 -14.09704 -14.05759 -13.67913 -13.58668 -13.37804 -13.17250 -12.67159 -12.56080 -12.20895 -11.91860 -11.78931 -11.67920 -11.35001 -11.03334 -10.90185 -10.84526 -10.75664 -10.55591 -10.45336 -10.40136 -9.84436 -9.27926 -9.23289 -8.79311 -8.47120 -7.33635 -6.06522 -4.08075 1.25287 1.88731 2.23346 2.64832 3.23208 3.29099 3.35324 3.37004 3.41758 3.49450 3.61941 4.00908 4.17724 4.34829 4.39162 4.55228 4.66436 4.78653 4.80896 4.87100 5.14007 5.19665 5.26008 5.29184 5.35895 5.44512 5.49623 5.67410 5.68002 5.73274 5.80229 5.89509 6.00384 6.24570 6.29888 6.48215 6.53446 6.76645 7.15313 7.22703 7.27530 7.74932 8.01191 8.11706 8.47083 8.47591 8.99715 9.56679 11.04325 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.002263 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.652267 B =12367.901447 C =12419.311857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 N -0.454 5.454 4 C 0.144 3.856 5 C -0.070 4.070 6 C 0.458 3.542 7 F -0.183 7.183 8 F -0.178 7.178 9 F -0.170 7.170 10 N -0.255 5.255 11 N -0.304 5.304 12 C 0.374 3.626 13 N -0.469 5.469 14 C 0.072 3.928 15 C 0.059 3.941 16 N -0.537 5.537 17 C 0.194 3.806 18 C -0.508 4.508 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.070 3.930 27 C 0.070 3.930 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.033 0.967 39 H -0.007 1.007 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.031 0.969 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -7.000 -26.195 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.147 5.147 4 C -0.123 4.123 5 C -0.111 4.111 6 C 0.402 3.598 7 F -0.164 7.164 8 F -0.160 7.160 9 F -0.151 7.151 10 N -0.097 5.097 11 N -0.149 5.149 12 C 0.018 3.982 13 N -0.196 5.196 14 C -0.055 4.055 15 C -0.070 4.070 16 N -0.263 5.263 17 C 0.069 3.931 18 C -0.547 4.547 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.059 4.059 27 C -0.056 4.056 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.010 0.990 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.608 -5.711 -25.984 26.652 hybrid contribution -0.847 -1.012 0.534 1.424 sum 0.762 -6.724 -25.449 26.334 Atomic orbital electron populations 1.22138 0.93291 1.03561 1.03552 1.21973 0.96196 0.78403 1.05338 1.46424 1.48406 1.13785 1.06067 1.23575 1.07527 0.91020 0.90156 1.21081 0.94285 1.05192 0.90511 1.20312 0.88074 0.76850 0.74533 1.93195 1.95573 1.55334 1.72320 1.93217 1.96842 1.90862 1.35046 1.93270 1.62253 1.64670 1.94897 1.74071 1.16091 1.15773 1.03804 1.74780 1.18853 1.18458 1.02765 1.22592 0.99703 0.86780 0.89076 1.59092 1.13039 1.52428 0.94999 1.22296 0.88109 1.01865 0.93275 1.22086 0.97854 0.94824 0.92275 1.62301 1.08780 1.50293 1.04885 1.19718 0.96816 0.95331 0.81197 1.21181 1.32049 1.05931 0.95490 0.91765 1.24986 0.96424 0.95895 0.97275 1.69964 1.46311 1.28603 1.08893 0.86454 0.79789 0.81879 0.79380 1.19608 1.21139 1.20987 1.22024 0.93616 1.00309 0.89968 1.22370 0.92955 0.94613 0.95706 0.90875 0.92203 0.90021 0.88864 0.87616 0.85475 0.83634 0.91964 0.91087 0.90118 0.94913 0.98951 0.95031 0.92949 0.95087 0.88691 0.91943 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.10 0.78 6.67 -4.04 -0.03 0.76 16 3 N -0.45 -5.01 2.81 -114.09 -0.32 -5.33 16 4 C 0.14 1.57 6.79 -154.01 -1.05 0.53 16 5 C -0.07 -0.44 5.43 -27.89 -0.15 -0.59 16 6 C 0.46 3.61 3.15 37.15 0.12 3.73 16 7 F -0.18 -1.61 15.89 2.25 0.04 -1.57 16 8 F -0.18 -1.30 17.32 2.25 0.04 -1.26 16 9 F -0.17 -1.80 17.02 2.25 0.04 -1.76 16 10 N -0.26 -3.76 12.18 32.99 0.40 -3.36 16 11 N -0.30 -4.99 12.18 30.31 0.37 -4.62 16 12 C 0.37 5.33 6.46 -318.89 -2.06 3.27 16 13 N -0.47 -6.82 4.73 -174.36 -0.82 -7.65 16 14 C 0.07 1.09 5.54 -3.76 -0.02 1.07 16 15 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 16 N -0.54 -11.12 4.70 -235.90 -1.11 -12.23 16 17 C 0.19 4.88 4.72 -4.97 -0.02 4.86 16 18 C -0.51 -13.86 8.47 -34.44 -0.29 -14.15 16 19 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 22 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 27 C 0.07 1.10 5.51 -3.77 -0.02 1.08 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.51 6.48 -51.93 -0.34 0.17 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.13 0.39 7.80 -51.93 -0.40 -0.02 16 34 H 0.15 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.96 8.13 -51.92 -0.42 0.54 16 37 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 40 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.87 6.79 -51.92 -0.35 1.52 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -32.45 380.70 -9.71 -42.16 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -6.51 Total: -4.47 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.28 Total: 3.53 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.75 Total: -58.63 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.11 Total: -4.59 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.45 -9.71 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601866484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.210 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds