Wall clock time and date at job start Wed Apr 1 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99612 * 2 1 4 4 C 1.53000 * 109.47482 * 273.69674 * 3 2 1 5 5 H 1.09001 * 109.53443 * 306.06248 * 4 3 2 6 6 C 1.53116 * 109.50301 * 66.16486 * 4 3 2 7 7 C 1.53119 * 109.16109 * 177.59690 * 6 4 3 8 8 C 1.53033 * 109.27781 * 302.34174 * 7 6 4 9 9 N 1.46851 * 109.52312 * 59.18157 * 8 7 6 10 10 C 1.46889 * 111.00347 * 174.15686 * 9 8 7 11 11 C 1.50702 * 109.47376 * 294.21413 * 10 9 8 12 12 O 1.21278 * 119.99975 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00046 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99877 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46991 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99849 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99787 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46963 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47286 * 300.00390 * 19 17 15 22 22 H 1.48492 * 109.47269 * 60.00828 * 19 17 15 23 23 C 1.46850 * 111.19787 * 298.25834 * 9 8 7 24 24 S 1.65595 * 120.00102 * 180.02562 * 2 1 3 25 25 C 1.81408 * 104.44614 * 274.92356 * 24 2 1 26 26 O 1.42097 * 104.27935 * 30.99091 * 24 2 1 27 27 O 1.42104 * 104.27806 * 158.85603 * 24 2 1 28 28 H 1.09003 * 109.47300 * 90.00015 * 1 2 3 29 29 H 1.08999 * 109.46962 * 209.99567 * 1 2 3 30 30 H 1.09003 * 109.47258 * 329.99795 * 1 2 3 31 31 H 1.09005 * 109.46764 * 153.69824 * 3 2 1 32 32 H 1.08997 * 109.47348 * 33.70014 * 3 2 1 33 33 H 1.09006 * 109.51886 * 297.50281 * 6 4 3 34 34 H 1.09000 * 109.52090 * 57.68859 * 6 4 3 35 35 H 1.08995 * 109.50494 * 62.28774 * 7 6 4 36 36 H 1.09006 * 109.50042 * 182.36354 * 7 6 4 37 37 H 1.08994 * 109.46465 * 299.16504 * 8 7 6 38 38 H 1.08998 * 109.45931 * 179.19150 * 8 7 6 39 39 H 1.08996 * 109.47486 * 174.20862 * 10 9 8 40 40 H 1.09010 * 109.47082 * 54.20874 * 10 9 8 41 41 H 0.96995 * 120.00533 * 359.97438 * 13 11 10 42 42 H 1.09004 * 109.46804 * 59.99892 * 14 13 11 43 43 H 1.08996 * 109.46827 * 299.99943 * 14 13 11 44 44 H 0.96998 * 120.00373 * 359.97438 * 18 17 15 45 45 H 1.08994 * 109.46588 * 181.75640 * 23 9 8 46 46 H 1.08995 * 109.45908 * 301.72424 * 23 9 8 47 47 H 1.09001 * 109.46752 * 55.01451 * 25 24 2 48 48 H 1.09006 * 109.46969 * 175.01398 * 25 24 2 49 49 H 1.09000 * 109.47070 * 295.00892 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3719 1.7570 -1.4395 5 1 2.8349 0.9718 -2.0371 6 6 1.0034 2.1088 -2.0293 7 6 1.1925 2.6529 -3.4481 8 6 2.1174 3.8712 -3.4029 9 7 3.4133 3.4827 -2.8317 10 6 4.3729 4.5927 -2.9000 11 6 4.6874 4.8968 -4.3422 12 8 4.1640 4.2520 -5.2260 13 7 5.5510 5.8847 -4.6497 14 6 5.8571 6.1800 -6.0517 15 6 6.8415 7.3189 -6.1218 16 1 7.2033 7.7767 -5.2129 17 6 7.2811 7.7758 -7.3461 18 7 6.8409 7.2180 -8.4528 19 14 8.5018 9.1870 -7.4330 20 1 8.8120 9.4864 -8.8540 21 1 7.9141 10.3902 -6.7909 22 1 9.7494 8.8067 -6.7232 23 6 3.2628 3.0013 -1.4525 24 16 2.2930 -1.4341 -0.0006 25 6 2.3887 -1.9022 1.7494 26 8 1.4459 -2.3275 -0.7101 27 8 3.5806 -1.0951 -0.4972 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 3.1770 1.1228 0.4554 32 1 1.6387 2.0109 0.5702 33 1 0.3802 1.2151 -2.0619 34 1 0.5235 2.8663 -1.4096 35 1 1.6368 1.8817 -4.0773 36 1 0.2254 2.9444 -3.8579 37 1 1.6661 4.6472 -2.7847 38 1 2.2656 4.2523 -4.4133 39 1 5.2890 4.3137 -2.3794 40 1 3.9414 5.4756 -2.4283 41 1 5.9699 6.4003 -3.9429 42 1 4.9412 6.4593 -6.5725 43 1 6.2884 5.2970 -6.5231 44 1 6.2073 6.4849 -8.4077 45 1 4.2426 2.7507 -1.0463 46 1 2.8060 3.7814 -0.8435 47 1 1.3852 -1.9275 2.1741 48 1 2.8456 -2.8880 1.8374 49 1 2.9930 -1.1724 2.2882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796128377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:02 Heat of formation + Delta-G solvation = -104.503994 kcal Electronic energy + Delta-G solvation = -29163.434467 eV Core-core repulsion = 25059.666911 eV Total energy + Delta-G solvation = -4103.767556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.79076 -38.49744 -37.49799 -36.66047 -36.22529 -34.37731 -33.26905 -32.38418 -31.59742 -29.95969 -28.23595 -27.75420 -26.02129 -24.87923 -23.30081 -22.45221 -21.85591 -19.79816 -19.67093 -19.20366 -17.93432 -17.42258 -16.94153 -16.66122 -16.21745 -15.85591 -15.29943 -15.19370 -14.84627 -14.46893 -14.33335 -14.10070 -14.00753 -13.81939 -13.73784 -13.64096 -13.48202 -13.23199 -12.76466 -12.63095 -12.47125 -12.46538 -12.40736 -12.20768 -12.16789 -11.89247 -11.73942 -11.49159 -11.43723 -11.11161 -10.99990 -10.78523 -10.67807 -10.56948 -10.33105 -10.15105 -9.44115 -9.04750 -8.76290 -8.65810 -8.18161 -7.93948 -6.49787 -4.23274 -0.18621 2.18630 3.33637 3.38258 3.40525 3.47807 3.59150 3.62717 3.70376 4.09077 4.28437 4.33700 4.41930 4.48042 4.57089 4.70000 4.79752 4.99304 5.03789 5.08493 5.14607 5.21227 5.28832 5.29279 5.32571 5.36125 5.40533 5.44591 5.51838 5.57874 5.59587 5.69101 5.76113 5.91765 6.02474 6.03263 6.19896 6.33248 6.42540 6.97366 7.10899 7.20219 7.25487 7.37055 7.69098 8.28819 8.50581 8.73897 9.05062 9.50670 10.90325 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.001864 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.414075 B =15015.676712 C =15338.969121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.000 6.000 3 C 0.132 3.868 4 C -0.105 4.105 5 H 0.090 0.910 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.518 5.518 10 C 0.037 3.963 11 C 0.499 3.501 12 O -0.538 6.538 13 N -0.711 5.711 14 C 0.242 3.758 15 C -0.623 4.623 16 H 0.057 0.943 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 1.076 2.924 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.286 1.286 23 C 0.065 3.935 24 S 2.607 3.393 25 C -0.676 4.676 26 O -0.953 6.953 27 O -0.944 6.944 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.391 0.609 42 H 0.015 0.985 43 H 0.017 0.983 44 H 0.273 0.727 45 H 0.077 0.923 46 H 0.032 0.968 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 -14.320 26.736 33.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.006 3.994 4 C -0.125 4.125 5 H 0.109 0.891 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.076 4.076 9 N -0.242 5.242 10 C -0.094 4.094 11 C 0.283 3.717 12 O -0.416 6.416 13 N -0.360 5.360 14 C 0.120 3.880 15 C -0.661 4.661 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.536 5.536 19 Si 0.903 3.097 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.064 4.064 24 S 2.698 3.302 25 C -0.825 4.825 26 O -0.944 6.944 27 O -0.935 6.935 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.224 0.776 42 H 0.033 0.967 43 H 0.035 0.965 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.050 0.950 47 H 0.144 0.856 48 H 0.145 0.855 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.139 -14.656 23.990 31.031 hybrid contribution -1.089 0.093 2.737 2.947 sum -14.228 -14.563 26.727 33.598 Atomic orbital electron populations 1.21582 0.78372 1.02562 1.02763 1.57436 1.15159 1.21391 1.89792 1.21335 0.96339 0.84597 0.97154 1.21639 0.96329 0.98382 0.96146 0.89132 1.21769 0.96374 1.00669 0.96629 1.21543 0.98669 0.98311 0.96733 1.22273 0.87903 0.95913 1.01551 1.61463 1.09961 1.34303 1.18485 1.21968 0.97893 0.93674 0.95843 1.20367 0.80170 0.80674 0.90488 1.90625 1.51753 1.49762 1.49461 1.46272 1.44294 1.34373 1.11105 1.19132 0.95735 0.96064 0.77028 1.22066 1.29180 1.19266 0.95630 0.92526 1.25885 0.99384 1.01500 0.91669 1.70753 1.30010 1.23681 1.29170 0.83444 0.75258 0.74712 0.76249 1.20574 1.21336 1.21284 1.22030 0.99764 0.95637 0.88991 1.05146 0.74128 0.73408 0.77476 1.30604 1.11361 1.12427 1.28133 1.93619 1.67479 1.64391 1.68879 1.93656 1.40433 1.82203 1.77176 0.91703 0.91525 0.90878 0.89750 0.90247 0.91347 0.92520 0.90862 0.91743 0.95866 0.88457 0.88262 0.92539 0.77598 0.96690 0.96550 0.91678 0.90441 0.94994 0.85600 0.85502 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 9.11 59.85 0.55 0.97 16 2 N -1.00 -6.17 3.02 -121.76 -0.37 -6.54 16 3 C 0.13 0.85 4.77 -4.04 -0.02 0.83 16 4 C -0.10 -1.04 2.55 -90.54 -0.23 -1.27 16 5 H 0.09 1.17 7.99 -51.93 -0.41 0.75 16 6 C -0.12 -1.11 4.76 -26.61 -0.13 -1.23 16 7 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 8 C 0.05 0.73 5.11 -3.83 -0.02 0.71 16 9 N -0.52 -7.54 4.40 -236.12 -1.04 -8.57 16 10 C 0.04 0.55 5.45 -4.98 -0.03 0.52 16 11 C 0.50 10.08 7.50 -10.98 -0.08 9.99 16 12 O -0.54 -13.00 14.33 5.56 0.08 -12.92 16 13 N -0.71 -15.22 5.55 -61.47 -0.34 -15.56 16 14 C 0.24 6.47 4.74 -5.19 -0.02 6.45 16 15 C -0.62 -17.30 9.28 -34.44 -0.32 -17.62 16 16 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 17 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 18 N -0.90 -27.60 13.65 55.43 0.76 -26.85 16 19 Si 1.08 24.58 29.90 -169.99 -5.08 19.50 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.06 0.69 4.74 -3.83 -0.02 0.67 16 24 S 2.61 19.41 5.97 -107.50 -0.64 18.77 16 25 C -0.68 -2.20 10.99 101.05 1.11 -1.09 16 26 O -0.95 -10.41 17.28 -57.54 -0.99 -11.40 16 27 O -0.94 -10.70 16.68 -57.54 -0.96 -11.66 16 28 H 0.06 0.37 6.33 -51.93 -0.33 0.04 16 29 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 30 H 0.07 0.20 7.93 -51.93 -0.41 -0.21 16 31 H 0.08 0.48 7.51 -51.93 -0.39 0.09 16 32 H 0.08 0.35 7.94 -51.93 -0.41 -0.07 16 33 H 0.07 0.59 5.40 -51.93 -0.28 0.31 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 1.74 5.78 -51.93 -0.30 1.44 16 39 H 0.10 1.26 7.99 -51.93 -0.41 0.84 16 40 H 0.06 0.71 8.12 -51.92 -0.42 0.29 16 41 H 0.39 7.20 8.32 -40.82 -0.34 6.86 16 42 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 43 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 44 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 45 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 46 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 48 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -38.64 397.86 -10.31 -48.95 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.24 Total: 2.41 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 0.53 Total: -2.12 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.99 Total: -57.51 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.87 Total: -35.99 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Atomic # 16 Polarization: 19.41 SS G_CDS: -0.64 Total: 18.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.64 -10.31 -48.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796128377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.554 kcal (2) G-P(sol) polarization free energy of solvation -38.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds