Wall clock time and date at job start Wed Apr 1 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99422 * 2 1 4 4 C 1.53003 * 109.47413 * 274.99799 * 3 2 1 5 5 H 1.09004 * 109.49741 * 55.00080 * 4 3 2 6 6 C 1.53123 * 109.53583 * 294.90628 * 4 3 2 7 7 C 1.53115 * 109.16205 * 182.38133 * 6 4 3 8 8 C 1.53039 * 109.27570 * 57.65232 * 7 6 4 9 9 N 1.46848 * 109.52718 * 300.82017 * 8 7 6 10 10 C 1.46899 * 110.99992 * 185.83760 * 9 8 7 11 11 C 1.50700 * 109.46774 * 169.43483 * 10 9 8 12 12 O 1.21284 * 119.99992 * 353.78312 * 11 10 9 13 13 N 1.34779 * 119.99892 * 173.78658 * 11 10 9 14 14 C 1.46509 * 119.99902 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46898 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99966 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99965 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47333 * 89.99813 * 19 17 15 21 21 H 1.48500 * 109.47162 * 210.00024 * 19 17 15 22 22 H 1.48507 * 109.47126 * 330.00065 * 19 17 15 23 23 C 1.46852 * 111.19322 * 61.74326 * 9 8 7 24 24 S 1.65602 * 120.00321 * 179.97438 * 2 1 3 25 25 C 1.81397 * 104.44815 * 269.99966 * 24 2 1 26 26 O 1.42104 * 104.27507 * 26.07277 * 24 2 1 27 27 O 1.42098 * 104.27399 * 153.92927 * 24 2 1 28 28 H 1.09002 * 109.47157 * 90.00544 * 1 2 3 29 29 H 1.09008 * 109.46664 * 209.99772 * 1 2 3 30 30 H 1.08992 * 109.47519 * 329.99976 * 1 2 3 31 31 H 1.09004 * 109.47010 * 155.00302 * 3 2 1 32 32 H 1.08997 * 109.47575 * 35.00067 * 3 2 1 33 33 H 1.09000 * 109.51895 * 302.29080 * 6 4 3 34 34 H 1.09004 * 109.52337 * 62.47279 * 6 4 3 35 35 H 1.09000 * 109.50228 * 297.71765 * 7 6 4 36 36 H 1.08997 * 109.53830 * 177.61202 * 7 6 4 37 37 H 1.08997 * 109.46373 * 180.80253 * 8 7 6 38 38 H 1.09000 * 109.46370 * 60.83827 * 8 7 6 39 39 H 1.08997 * 109.47248 * 289.43148 * 10 9 8 40 40 H 1.08996 * 109.46950 * 49.43872 * 10 9 8 41 41 H 0.96995 * 120.00172 * 359.97438 * 13 11 10 42 42 H 1.08999 * 109.46738 * 299.99471 * 14 13 11 43 43 H 1.08997 * 109.47213 * 59.99589 * 14 13 11 44 44 H 0.96993 * 120.00516 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.45778 * 178.24303 * 23 9 8 46 46 H 1.08998 * 109.46338 * 58.27454 * 23 9 8 47 47 H 1.09005 * 109.47035 * 60.00081 * 25 24 2 48 48 H 1.09001 * 109.46982 * 180.02562 * 25 24 2 49 49 H 1.09004 * 109.47351 * 300.00064 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3436 1.7734 -1.4370 5 1 1.3595 1.8399 -1.9011 6 6 3.2200 0.8030 -2.2338 7 6 3.4096 1.3462 -3.6527 8 6 4.0343 2.7414 -3.5803 9 7 3.1579 3.6322 -2.8089 10 6 3.6568 5.0136 -2.8352 11 6 2.6116 5.9360 -2.2628 12 8 1.5144 5.5057 -1.9762 13 7 2.8960 7.2392 -2.0694 14 6 1.8800 8.1359 -1.5124 15 6 2.4469 9.5274 -1.3973 16 1 3.4624 9.7241 -1.7075 17 6 1.6690 10.5494 -0.8958 18 7 0.4321 10.3099 -0.5185 19 14 2.3714 12.2744 -0.7538 20 1 2.1057 13.0220 -2.0091 21 1 1.7303 12.9776 0.3862 22 1 3.8367 12.1950 -0.5257 23 6 2.9992 3.1561 -1.4288 24 16 2.2931 -1.4341 0.0006 25 6 2.5195 -1.8253 1.7574 26 8 1.3971 -2.3564 -0.6042 27 8 3.5396 -1.1192 -0.6047 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.1857 1.1178 0.4343 32 1 1.6501 2.0043 0.5894 33 1 4.1910 0.7063 -1.7479 34 1 2.7356 -0.1724 -2.2788 35 1 2.4423 1.4061 -4.1517 36 1 4.0674 0.6816 -4.2127 37 1 4.1575 3.1370 -4.5885 38 1 5.0076 2.6788 -3.0936 39 1 4.5673 5.0825 -2.2400 40 1 3.8723 5.3026 -3.8638 41 1 3.7735 7.5833 -2.2983 42 1 1.0097 8.1508 -2.1684 43 1 1.5846 7.7814 -0.5249 44 1 -0.1153 11.0289 -0.1661 45 1 2.3705 3.8529 -0.8744 46 1 3.9773 3.0915 -0.9522 47 1 1.5452 -1.9177 2.2375 48 1 3.0628 -2.7653 1.8532 49 1 3.0867 -1.0276 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796128385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:06 Heat of formation + Delta-G solvation = -99.557249 kcal Electronic energy + Delta-G solvation = -29561.973243 eV Core-core repulsion = 25458.420193 eV Total energy + Delta-G solvation = -4103.553049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.68218 -38.32002 -37.39989 -36.56615 -36.15072 -34.14832 -33.20946 -32.29019 -31.41922 -29.87761 -28.33416 -27.36867 -26.32663 -24.98714 -23.35574 -22.25550 -21.58583 -19.68478 -19.59599 -19.09074 -17.80565 -17.05695 -16.91884 -16.56508 -15.91040 -15.53591 -15.33716 -14.93709 -14.78424 -14.70028 -14.34512 -14.17595 -13.87529 -13.70923 -13.58876 -13.55965 -13.29002 -13.10434 -12.86722 -12.59795 -12.37593 -12.29871 -12.22536 -12.06083 -11.91809 -11.75625 -11.67089 -11.37244 -11.20594 -11.07476 -10.97711 -10.86397 -10.57797 -10.35729 -10.31334 -10.13078 -9.39496 -9.24981 -8.94470 -8.72729 -8.12149 -7.83111 -6.17100 -4.23788 -0.08286 2.30386 3.23508 3.29657 3.31820 3.43367 3.54852 3.72084 3.79529 4.20984 4.27744 4.43380 4.45210 4.53856 4.85709 4.87515 4.94770 5.13865 5.19003 5.19664 5.25514 5.26992 5.36046 5.42245 5.46926 5.50194 5.57924 5.62707 5.64411 5.71190 5.71473 5.90725 5.94190 6.02708 6.16281 6.19243 6.20456 6.41595 6.59975 7.09825 7.23598 7.34432 7.47642 7.53017 7.68858 7.97561 8.66187 8.80234 9.15945 9.43270 10.93115 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002158 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.017522 B =12971.631333 C =13846.436829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.998 5.998 3 C 0.130 3.870 4 C -0.100 4.100 5 H 0.086 0.914 6 C -0.107 4.107 7 C -0.117 4.117 8 C 0.057 3.943 9 N -0.517 5.517 10 C 0.036 3.964 11 C 0.498 3.502 12 O -0.537 6.537 13 N -0.717 5.717 14 C 0.252 3.748 15 C -0.543 4.543 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.062 3.938 24 S 2.604 3.396 25 C -0.678 4.678 26 O -0.957 6.957 27 O -0.943 6.943 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.389 0.611 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.266 0.734 45 H 0.093 0.907 46 H 0.027 0.973 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -24.034 2.478 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.836 5.836 3 C 0.004 3.996 4 C -0.121 4.121 5 H 0.104 0.896 6 C -0.145 4.145 7 C -0.155 4.155 8 C -0.071 4.071 9 N -0.242 5.242 10 C -0.095 4.095 11 C 0.282 3.718 12 O -0.415 6.415 13 N -0.366 5.366 14 C 0.131 3.869 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.067 4.067 24 S 2.696 3.304 25 C -0.827 4.827 26 O -0.947 6.947 27 O -0.933 6.933 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.221 0.779 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.046 0.954 47 H 0.144 0.856 48 H 0.144 0.856 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.664 -24.719 1.831 25.426 hybrid contribution 1.411 1.395 1.110 2.274 sum 7.074 -23.324 2.941 24.550 Atomic orbital electron populations 1.21481 0.78024 1.02748 1.02825 1.57381 1.15299 1.21256 1.89694 1.21376 0.96062 0.84639 0.97534 1.21557 1.00981 0.94256 0.95272 0.89585 1.21757 1.00517 0.97292 0.94973 1.21602 1.01422 0.94859 0.97638 1.22116 0.93641 0.93357 0.98008 1.61478 1.48823 1.00186 1.13694 1.22005 0.95884 0.89276 1.02367 1.20326 0.88876 0.83117 0.79492 1.90637 1.23664 1.75900 1.51307 1.46475 1.17843 1.08510 1.63795 1.19059 0.86809 0.86937 0.94056 1.21237 0.99553 0.93149 1.44160 0.91945 1.24952 0.94765 0.99405 0.94925 1.69972 1.07516 1.33101 1.41740 0.86423 0.79084 0.83621 0.77814 1.20458 1.21028 1.19781 1.22131 0.99078 0.96205 0.89251 1.05174 0.74507 0.73312 0.77421 1.30612 1.11600 1.11968 1.28493 1.93613 1.64787 1.62812 1.73490 1.93687 1.44516 1.82515 1.72623 0.92028 0.91445 0.90582 0.90250 0.89753 0.90726 0.92513 0.91315 0.91727 0.90931 0.95050 0.92698 0.88333 0.77878 0.95601 0.95694 0.92469 0.88833 0.95444 0.85594 0.85645 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.24 59.85 0.61 1.31 16 2 N -1.00 -8.21 2.85 -121.75 -0.35 -8.56 16 3 C 0.13 1.19 4.99 -4.04 -0.02 1.17 16 4 C -0.10 -1.20 2.56 -90.54 -0.23 -1.43 16 5 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 6 C -0.11 -1.28 3.62 -26.61 -0.10 -1.38 16 7 C -0.12 -1.35 6.09 -26.65 -0.16 -1.52 16 8 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 9 N -0.52 -7.45 4.35 -236.11 -1.03 -8.48 16 10 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 11 C 0.50 9.72 7.36 -10.98 -0.08 9.64 16 12 O -0.54 -12.55 14.70 5.55 0.08 -12.47 16 13 N -0.72 -14.81 5.55 -61.47 -0.34 -15.15 16 14 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 15 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 16 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 23 C 0.06 0.85 4.40 -3.83 -0.02 0.83 16 24 S 2.60 21.39 5.36 -107.50 -0.58 20.81 16 25 C -0.68 -3.09 10.99 101.05 1.11 -1.98 16 26 O -0.96 -10.98 17.09 -57.54 -0.98 -11.96 16 27 O -0.94 -10.08 12.98 -57.54 -0.75 -10.82 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.38 7.79 -51.92 -0.40 -0.03 16 30 H 0.08 0.49 7.94 -51.93 -0.41 0.08 16 31 H 0.08 0.61 7.61 -51.93 -0.40 0.22 16 32 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 33 H 0.07 0.91 7.25 -51.93 -0.38 0.54 16 34 H 0.06 0.70 5.94 -51.93 -0.31 0.39 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.10 1.24 7.98 -51.93 -0.41 0.83 16 41 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.09 1.52 6.05 -51.93 -0.31 1.21 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 48 H 0.12 0.44 8.14 -51.92 -0.42 0.01 16 49 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -35.89 396.77 -10.02 -45.91 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.40 Total: 3.16 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.62 Total: 1.09 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.98 Total: -57.37 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.65 Total: -35.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 21.39 SS G_CDS: -0.58 Total: 20.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.89 -10.02 -45.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796128385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.646 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds