Wall clock time and date at job start Wed Apr 1 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99422 * 2 1 4 4 C 1.53003 * 109.47413 * 274.99799 * 3 2 1 5 5 H 1.09004 * 109.49741 * 55.00080 * 4 3 2 6 6 C 1.53123 * 109.53583 * 294.90628 * 4 3 2 7 7 C 1.53115 * 109.16205 * 182.38133 * 6 4 3 8 8 C 1.53039 * 109.27570 * 57.65232 * 7 6 4 9 9 N 1.46848 * 109.52718 * 300.82017 * 8 7 6 10 10 C 1.46899 * 110.99992 * 185.83760 * 9 8 7 11 11 C 1.50700 * 109.46774 * 169.43483 * 10 9 8 12 12 O 1.21284 * 119.99992 * 353.78312 * 11 10 9 13 13 N 1.34779 * 119.99892 * 173.78658 * 11 10 9 14 14 C 1.46509 * 119.99902 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46898 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99966 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99965 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47333 * 89.99813 * 19 17 15 21 21 H 1.48500 * 109.47162 * 210.00024 * 19 17 15 22 22 H 1.48507 * 109.47126 * 330.00065 * 19 17 15 23 23 C 1.46852 * 111.19322 * 61.74326 * 9 8 7 24 24 S 1.65602 * 120.00321 * 179.97438 * 2 1 3 25 25 C 1.81397 * 104.44815 * 269.99966 * 24 2 1 26 26 O 1.42104 * 104.27507 * 26.07277 * 24 2 1 27 27 O 1.42098 * 104.27399 * 153.92927 * 24 2 1 28 28 H 1.09002 * 109.47157 * 90.00544 * 1 2 3 29 29 H 1.09008 * 109.46664 * 209.99772 * 1 2 3 30 30 H 1.08992 * 109.47519 * 329.99976 * 1 2 3 31 31 H 1.09004 * 109.47010 * 155.00302 * 3 2 1 32 32 H 1.08997 * 109.47575 * 35.00067 * 3 2 1 33 33 H 1.09000 * 109.51895 * 302.29080 * 6 4 3 34 34 H 1.09004 * 109.52337 * 62.47279 * 6 4 3 35 35 H 1.09000 * 109.50228 * 297.71765 * 7 6 4 36 36 H 1.08997 * 109.53830 * 177.61202 * 7 6 4 37 37 H 1.08997 * 109.46373 * 180.80253 * 8 7 6 38 38 H 1.09000 * 109.46370 * 60.83827 * 8 7 6 39 39 H 1.08997 * 109.47248 * 289.43148 * 10 9 8 40 40 H 1.08996 * 109.46950 * 49.43872 * 10 9 8 41 41 H 0.96995 * 120.00172 * 359.97438 * 13 11 10 42 42 H 1.08999 * 109.46738 * 299.99471 * 14 13 11 43 43 H 1.08997 * 109.47213 * 59.99589 * 14 13 11 44 44 H 0.96993 * 120.00516 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.45778 * 178.24303 * 23 9 8 46 46 H 1.08998 * 109.46338 * 58.27454 * 23 9 8 47 47 H 1.09005 * 109.47035 * 60.00081 * 25 24 2 48 48 H 1.09001 * 109.46982 * 180.02562 * 25 24 2 49 49 H 1.09004 * 109.47351 * 300.00064 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3436 1.7734 -1.4370 5 1 1.3595 1.8399 -1.9011 6 6 3.2200 0.8030 -2.2338 7 6 3.4096 1.3462 -3.6527 8 6 4.0343 2.7414 -3.5803 9 7 3.1579 3.6322 -2.8089 10 6 3.6568 5.0136 -2.8352 11 6 2.6116 5.9360 -2.2628 12 8 1.5144 5.5057 -1.9762 13 7 2.8960 7.2392 -2.0694 14 6 1.8800 8.1359 -1.5124 15 6 2.4469 9.5274 -1.3973 16 1 3.4624 9.7241 -1.7075 17 6 1.6690 10.5494 -0.8958 18 7 0.4321 10.3099 -0.5185 19 14 2.3714 12.2744 -0.7538 20 1 2.1057 13.0220 -2.0091 21 1 1.7303 12.9776 0.3862 22 1 3.8367 12.1950 -0.5257 23 6 2.9992 3.1561 -1.4288 24 16 2.2931 -1.4341 0.0006 25 6 2.5195 -1.8253 1.7574 26 8 1.3971 -2.3564 -0.6042 27 8 3.5396 -1.1192 -0.6047 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.1857 1.1178 0.4343 32 1 1.6501 2.0043 0.5894 33 1 4.1910 0.7063 -1.7479 34 1 2.7356 -0.1724 -2.2788 35 1 2.4423 1.4061 -4.1517 36 1 4.0674 0.6816 -4.2127 37 1 4.1575 3.1370 -4.5885 38 1 5.0076 2.6788 -3.0936 39 1 4.5673 5.0825 -2.2400 40 1 3.8723 5.3026 -3.8638 41 1 3.7735 7.5833 -2.2983 42 1 1.0097 8.1508 -2.1684 43 1 1.5846 7.7814 -0.5249 44 1 -0.1153 11.0289 -0.1661 45 1 2.3705 3.8529 -0.8744 46 1 3.9773 3.0915 -0.9522 47 1 1.5452 -1.9177 2.2375 48 1 3.0628 -2.7653 1.8532 49 1 3.0867 -1.0276 2.2372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796128385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:05 Heat of formation + Delta-G solvation = -128.547783 kcal Electronic energy + Delta-G solvation = -29563.230367 eV Core-core repulsion = 25458.420193 eV Total energy + Delta-G solvation = -4104.810173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93688 -39.64591 -38.15822 -37.40861 -36.88560 -36.05364 -34.37133 -34.15717 -32.33297 -30.30330 -29.99339 -28.23667 -27.80020 -25.75784 -24.86765 -23.76084 -22.58148 -21.26697 -20.64234 -19.77716 -18.86914 -18.49388 -17.67084 -17.43013 -17.33334 -17.06724 -16.58045 -16.41226 -15.89908 -15.68856 -15.49274 -15.43200 -14.94928 -14.59304 -14.54933 -14.17519 -14.08291 -13.98447 -13.95340 -13.89957 -13.74352 -13.62565 -13.20224 -13.05289 -13.00012 -12.87722 -12.80193 -12.68159 -12.49415 -12.33899 -12.21198 -12.01807 -11.92294 -11.52566 -11.46433 -11.27615 -11.15930 -10.78037 -10.54457 -9.94055 -9.75315 -9.18331 -8.27624 -6.43839 -0.68380 1.44030 1.46204 1.57296 1.67046 1.86126 2.30154 2.49710 2.97061 3.07257 3.08461 3.20582 3.61178 3.92877 3.93786 3.96161 4.10129 4.10904 4.15842 4.24473 4.35558 4.42498 4.50011 4.52382 4.55706 4.67536 4.68020 4.75056 4.88779 4.95118 4.97001 5.00790 5.03694 5.05646 5.14774 5.21872 5.25841 5.28172 5.34015 5.52255 5.60461 5.63114 5.74417 5.87872 6.07444 6.22694 6.67892 7.00948 7.25903 7.58901 8.84540 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002158 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.017522 B =12971.631333 C =13846.436829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.000 6.000 3 C 0.130 3.870 4 C -0.097 4.097 5 H 0.059 0.941 6 C -0.102 4.102 7 C -0.119 4.119 8 C 0.060 3.940 9 N -0.543 5.543 10 C 0.050 3.950 11 C 0.495 3.505 12 O -0.582 6.582 13 N -0.712 5.712 14 C 0.270 3.730 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.255 1.255 23 C 0.066 3.934 24 S 2.603 3.397 25 C -0.655 4.655 26 O -0.997 6.997 27 O -0.973 6.973 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.407 0.593 42 H -0.016 1.016 43 H -0.013 1.013 44 H 0.268 0.732 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.737 -24.114 3.128 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.837 5.837 3 C 0.004 3.996 4 C -0.118 4.118 5 H 0.077 0.923 6 C -0.140 4.140 7 C -0.156 4.156 8 C -0.067 4.067 9 N -0.268 5.268 10 C -0.081 4.081 11 C 0.281 3.719 12 O -0.462 6.462 13 N -0.363 5.363 14 C 0.147 3.853 15 C -0.592 4.592 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.179 1.179 23 C -0.063 4.063 24 S 2.700 3.300 25 C -0.808 4.808 26 O -0.988 6.988 27 O -0.963 6.963 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.243 0.757 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.163 0.837 48 H 0.162 0.838 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.588 -24.816 2.412 26.371 hybrid contribution 0.465 1.317 0.937 1.682 sum 9.053 -23.500 3.350 25.405 Atomic orbital electron populations 1.21572 0.77830 1.04103 1.02128 1.57282 1.15466 1.20856 1.90090 1.21360 0.97336 0.85123 0.95772 1.21509 0.99410 0.93770 0.97107 0.92265 1.21699 1.00291 0.96738 0.95249 1.21630 1.01126 0.95434 0.97449 1.22156 0.93590 0.92547 0.98395 1.61433 1.50392 1.00602 1.14334 1.21929 0.94356 0.88047 1.03770 1.21336 0.89440 0.82954 0.78131 1.90623 1.26103 1.76566 1.52874 1.46210 1.17563 1.08617 1.63884 1.18471 0.87065 0.88357 0.91391 1.21633 1.00488 0.93206 1.43921 0.89850 1.26057 0.94945 1.04426 0.94217 1.70136 1.09313 1.34768 1.42785 0.85175 0.79016 0.77329 0.77803 1.19728 1.20989 1.17878 1.22035 0.99274 0.96033 0.88947 1.04949 0.73357 0.72566 0.79096 1.30390 1.13425 1.13513 1.23509 1.93562 1.65662 1.63697 1.75831 1.93636 1.45200 1.82730 1.74750 0.93876 0.89471 0.89840 0.88330 0.89450 0.90519 0.93339 0.92790 0.90046 0.89538 0.93502 0.89737 0.85712 0.75740 0.99829 0.99475 0.92299 0.92105 0.93771 0.83720 0.83842 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.24 127.77 1.31 2.66 16 2 N -1.00 -16.25 2.85 -539.11 -1.54 -17.79 16 3 C 0.13 2.36 4.99 86.38 0.43 2.79 16 4 C -0.10 -2.38 2.56 -10.74 -0.03 -2.40 16 5 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 6 C -0.10 -2.40 3.62 30.67 0.11 -2.29 16 7 C -0.12 -2.63 6.09 30.65 0.19 -2.45 16 8 C 0.06 1.29 5.46 86.33 0.47 1.76 16 9 N -0.54 -15.13 4.35 -900.93 -3.92 -19.04 16 10 C 0.05 1.34 5.45 85.56 0.47 1.81 16 11 C 0.49 19.50 7.36 87.66 0.65 20.14 16 12 O -0.58 -28.47 14.70 -3.04 -0.04 -28.51 16 13 N -0.71 -29.58 5.55 -466.77 -2.59 -32.17 16 14 C 0.27 14.73 5.43 85.63 0.46 15.19 16 15 C -0.55 -29.92 9.28 25.60 0.24 -29.69 16 16 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 19 Si 0.98 41.99 29.54 68.60 2.03 44.01 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C 0.07 1.79 4.40 86.32 0.38 2.17 16 24 S 2.60 40.72 5.36 -56.49 -0.30 40.42 16 25 C -0.66 -3.92 10.99 113.37 1.25 -2.68 16 26 O -1.00 -23.04 17.09 -127.65 -2.18 -25.22 16 27 O -0.97 -20.11 12.98 -127.65 -1.66 -21.77 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.94 7.79 -2.38 -0.02 0.92 16 30 H 0.08 1.11 7.94 -2.39 -0.02 1.09 16 31 H 0.10 1.39 7.61 -2.38 -0.02 1.37 16 32 H 0.09 1.52 7.96 -2.39 -0.02 1.50 16 33 H 0.08 1.78 7.25 -2.39 -0.02 1.77 16 34 H 0.05 1.22 5.94 -2.39 -0.01 1.21 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.61 8.01 -2.39 -0.02 1.60 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 40 H 0.13 2.75 7.98 -2.39 -0.02 2.73 16 41 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.06 2.06 6.05 -2.38 -0.01 2.05 16 46 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -81.94 396.77 -3.37 -85.31 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.16 Total: 22.83 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.38 Total: 7.64 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -7.76 Total: -124.71 kcal Atomic # 8 Polarization: -71.62 SS G_CDS: -3.88 Total: -75.50 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 40.72 SS G_CDS: -0.30 Total: 40.42 kcal Total: -81.94 -3.37 -85.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796128385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.242 kcal (2) G-P(sol) polarization free energy of solvation -81.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds